Opened 8 years ago

Closed 8 years ago

Last modified 8 years ago

#765 closed defect (fixed)

"usage blast" gives traceback (delayed registration failed)

Reported by: Elaine Meng Owned by: Conrad Huang
Priority: major Milestone:
Component: Sequence Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

usage blast
Traceback (most recent call last):
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/toolshed/info.py", line 220, in _register_cmd
raise ToolshedError("bundle \"%s\"'s API forgot to override register_command()" % self.name)
chimerax.core.toolshed.ToolshedError: bundle "ChimeraX-Tug"'s API forgot to override register_command()

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py", line 1767, in lazy_register
deferred.call()
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py", line 1698, in call
return self.proxy()
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/toolshed/info.py", line 206, in cb
s._register_cmd(n, l)
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/toolshed/info.py", line 224, in _register_cmd
"register_command() failed for command %s in bundle %s:\n%s" % (command_name, self.name, str(e)))
chimerax.core.toolshed.ToolshedError: register_command() failed for command blastprotein in bundle ChimeraX-Tug:
bundle "ChimeraX-Tug"'s API forgot to override register_command()

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/cmd_line/tool.py", line 178, in execute
cmd.run(cmd_text)
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py", line 2395, in run
result = ci.function(session, kw_args)
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/usage.py", line 67, in usage
usage = cli.usage(command_name, show_hidden=show_hidden)
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py", line 2562, in usage
cmd._find_command_name(no_aliases=no_aliases)
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py", line 2117, in _find_command_name
what.lazy_register()
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py", line 1769, in lazy_register
raise RuntimeError("delayed registration failed")
RuntimeError: delayed registration failed

RuntimeError: delayed registration failed

File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py", line 1769, in lazy_register
raise RuntimeError("delayed registration failed")

See log for complete Python traceback.

If you wish to report this error, send mail to chimerax-bugs@… and describe what you were doing and include a copy of the contents of the log.

Change History (2)

comment:1 by Conrad Huang, 8 years ago

Resolution: fixed
Status: assignedclosed

Fixed in 2837440. Wrong ChimeraX classifiers were added to ChimeraX-Tug during bundle layout migration.

comment:2 by pett, 8 years ago

Component: UnassignedSequence
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