Timeline



Jan 19, 2016:

6:26 PM Ticket #252 (Nucleotide display) created by Tom Goddard
Andreas Prlic wants nucleotide slab display for rendering images for …
1:04 PM Ticket #251 (Session save/restore slow) created by Tom Goddard
Session save of 3j3q takes 44 seconds and restore takes 26 seconds (on …

Jan 15, 2016:

7:10 PM Ticket #250 (Logger collapse similar causes thread related crashes) created by Tom Goddard
Andreas Prlic's image capture script was causing numerous thread …
9:44 AM 2016-01-14 edited by Tom Ferrin
(diff)

Jan 14, 2016:

11:01 PM Ticket #247 (help hide does not show documentation) closed by Greg Couch
fixed
3:13 PM Ticket #249 (command links in help viewer should be treated as if typed) created by tef@…
After a discussion at today's Chimera meeting, we decided that when a …
3:11 PM Ticket #248 (Treat quick links as if they were typed) created by tef@…
Have clicked quick links appear in the command line and command history.
3:03 PM DeveloperMeetings edited by Tom Ferrin
(diff)
3:01 PM 2016-01-14 edited by Tom Ferrin
(diff)
2:27 PM 2016-01-14 edited by Tom Ferrin
(diff)
2:24 PM 2016-01-14 created by Tom Ferrin
12:26 PM Ticket #247 (help hide does not show documentation) created by Tom Goddard
The "help hide" command is supposed to display the user guide …
10:50 AM 2016-01-11 edited by Elaine Meng
(diff)

Jan 13, 2016:

6:52 PM 2016-01-11 edited by Tom Goddard
(diff)
6:32 PM 2016-01-11 edited by Tom Goddard
(diff)
6:32 PM 2016-01-11 edited by Tom Goddard
(diff)
2:41 PM Ticket #242 (cannot use command: sel @c5') closed by Conrad Huang
fixed: Added ' and " as legal characters in atomspec names. May have …
2:15 PM Ticket #230 (Too many warning dialogs reading trajectory of PDB files) closed by pett
fixed: Moved collation up to a higher level (models.open), so all these …

Jan 12, 2016:

7:48 PM Ticket #244 (hide tether if ribbon segment hidden?) closed by Conrad Huang
fixed: Fixed. Tethers are displayed only for residues with ribbon displayed.
6:11 PM Ticket #243 (tether color lag?) closed by Conrad Huang
fixed: Fixed in daily build. Was only updating tethers if there was a …
5:57 PM Ticket #246 (Commands separated by ";" are parsed before any are run) created by Tom Goddard
open 1a0m ; color #1 blue does not color the model blue. The problem …
5:41 PM Ticket #245 (External links in Quick Start Guide do nothing) created by Tom Goddard
Clicking links in the Quick Start Guide that go to sites on the web do …
4:44 PM 2016-01-11 edited by Tom Goddard
(diff)
4:43 PM 2016-01-11 edited by Tom Goddard
(diff)
3:36 PM Ticket #244 (hide tether if ribbon segment hidden?) created by Elaine Meng
Not sure if this is hard, but seems like if you undisplay part of the …
3:22 PM Ticket #243 (tether color lag?) created by Elaine Meng
I infer tether color is supposed to track the CA color, but it does …
3:18 PM Ticket #242 (cannot use command: sel @c5') created by Elaine Meng
open 1bna sel @c5' gives: Traceback (most recent call last): File …
12:18 PM Ticket #241 (HTML new-tab links do nothing in ChimeraX viewer) created by Elaine Meng
Links that would open a new tab in other browsers do nothing in the …
10:33 AM 2016-01-11 edited by Tom Goddard
(diff)

Jan 11, 2016:

4:04 PM Ticket #240 (Rainbow command: Missing required "objects" positional argument) created by Tom Goddard
When the rainbow command is issued with no arguments it gives the …
2:01 PM 2016-01-11 edited by Tom Ferrin
(diff)
1:22 PM 2016-01-11 edited by Tom Ferrin
(diff)
11:10 AM Ticket #237 (command "delete solvent" gives error) closed by pett
fixed: Removed unnecessary and buggy code that tried to get unique set of pointers
10:42 AM Ticket #238 (cannot intersect built-in selector with atom names) closed by Tom Goddard
fixed: Fixed. Oops! Broke this at the end of last week when I was …
10:17 AM Ticket #239 (File... Save GUI save image adds ".cxs" before image suffix) created by Elaine Meng
If I choose menu: File... Save, then "Image File" with format:PNG, and …
9:52 AM 2016-01-11 edited by Conrad Huang
(diff)
9:30 AM Ticket #238 (cannot intersect built-in selector with atom names) created by Elaine Meng
commands like "show helix & @n,ca,c,o" or "show @n,ca,c,o & protein" …
9:25 AM Ticket #237 (command "delete solvent" gives error) created by Elaine Meng
open anything with solvent, use command "delete solvent" Traceback …

Jan 8, 2016:

4:38 PM Ticket #236 (Saving a session with an unknown model type gives an error) created by Tom Goddard
Saving a session with an unknown model type fails with an error. It …
4:32 PM Ticket #234 (Error saving session with molecular surface) closed by Tom Goddard
fixed: Fixed. I found the table in core/init.py that lists where classes …
4:25 PM Ticket #235 (Compressed session files should have suffix .cxs instead of .cxs.gz) created by Tom Goddard
Summary says it all.
4:22 PM Ticket #234 (Error saving session with molecular surface) created by Tom Goddard
open 1a0m surf save ~/Desktop/test.cxs Traceback (most recent call …

Jan 7, 2016:

5:26 PM 2016-01-11 edited by pett
(diff)
5:26 PM 2016-01-11 edited by pett
(diff)
5:19 PM 2016-01-11 edited by pett
(diff)
5:07 PM 2016-01-11 edited by pett
(diff)
5:06 PM 2016-01-11 edited by pett
(diff)
5:03 PM 2016-01-11 edited by pett
(diff)
4:51 PM 2016-01-11 edited by pett
(diff)
4:43 PM 2016-01-11 edited by pett
(diff)
4:05 PM 2016-01-11 edited by Greg Couch
(diff)
4:00 PM 2016-01-11 edited by pett
(diff)
3:58 PM 2016-01-11 edited by Tom Goddard
(diff)
3:50 PM DeveloperMeetings edited by Conrad Huang
(diff)
3:49 PM DeveloperMeetings edited by Conrad Huang
(diff)
3:49 PM 2016-01-11 created by Conrad Huang
3:36 PM Ticket #233 (Does not start first time run on Mac) created by Tom Goddard
After downloading a ChimeraX daily build from the web and starting it, …
2:58 PM 2016-01-07 edited by Conrad Huang
(diff)
2:45 PM 2016-01-07 edited by Conrad Huang
(diff)
2:23 PM 2016-01-07 created by Conrad Huang
2:08 PM DeveloperMeetings edited by Conrad Huang
(diff)

Jan 5, 2016:

3:54 PM Ticket #232 (Model panel slows down movie recording) created by Tom Goddard
Model panel slows down movie recording when I display a sequence of …

Dec 31, 2015:

11:32 AM Ticket #231 (Build does not see atomstruct_cpp changes causing crashes) created by Tom Goddard
Changes to atomstruct_cpp followed by a compile often results in a …

Dec 30, 2015:

2:30 PM Ticket #230 (Too many warning dialogs reading trajectory of PDB files) created by Tom Goddard
I tried reading 230 PDB files (part of a trajectory) using the File / …
2:18 PM Ticket #229 (Ribbon error opening a PDB: "different number of coordinates and guides") created by Tom Goddard
Get an error trying to open the attached PDB file, obtained from Chris …
1:37 PM Ticket #224 ("frame drawn" trigger not fired after session restore) closed by Tom Goddard
fixed: Fixed. Models object restore reset the redraw callback to None and …
11:56 AM Ticket #228 (Export command script from a future animation gui) created by olibclarke@…
Begin forwarded message: From: Oliver Clarke Subject: [Chimera-users] …
11:55 AM Ticket #227 (Use commands to specify interpolation in a future animation gui) created by olibclarke@…
Begin forwarded message: From: Oliver Clarke Subject: [Chimera-users] …
11:25 AM Ticket #226 (Identify hinged groups of atoms found by morph calculation) created by olibclarke@…
Begin forwarded message: From: Oliver Clarke Subject: [Chimera-users] …
11:13 AM Ticket #225 (Command to modulate colors) created by olibclarke@…
Oliver asks for a command to modulate hue, lightness or saturation of …

Dec 23, 2015:

11:20 AM Ticket #224 ("frame drawn" trigger not fired after session restore) created by pett
Pretty much as per the subject
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