Timeline



Dec 16, 2016:

6:23 PM Ticket #508 (Stereoscopic 360 camera broken if models moved) created by Tom Goddard
If any displayed models have transforms that are not the identity the …

Dec 15, 2016:

3:49 PM 2016-12-15 edited by Conrad Huang
(diff)
2:06 PM Ticket #507 (Make "help movie" show docs instead of list of subcommands) created by Tom Goddard
Want "help movie" to show the movie command manual page in the html …
1:52 PM DeveloperMeetings edited by Tom Ferrin
(diff)
1:52 PM 2016-12-15 created by Tom Ferrin
1:47 PM 2016-12-08 edited by Tom Ferrin
(diff)

Dec 14, 2016:

12:30 PM Ticket #506 (pip install overrides LD_LIBRARY_PATH) created by tic20@…
If I define a little bash script, chimera-python, wrapping ChimeraX's …

Dec 13, 2016:

3:19 PM Ticket #505 (Molecular surface (coloring?) breaks session restore) closed by Tom Goddard
fixed: Fixed. Session restore code was producing arrays of C++ pointers that …
11:17 AM Ticket #505 (Molecular surface (coloring?) breaks session restore) created by Elaine Meng
I had a session with a molecule, molecular surface, and a dx file …

Dec 12, 2016:

10:27 AM Ticket #504 (Changing the .selected attribute of Drawing objects doesn't propagate ...) created by tic20@…
TL;DR: changing the .selected attribute of Drawing objects doesn't …

Dec 9, 2016:

4:26 PM 2016-12-08 edited by Tom Ferrin
(diff)
1:07 PM Ticket #503 (Allow selection atoms through holes in mesh surface) created by tic20@…
Want ctrl-click to select atoms behind a mesh if click is not on a …
1:03 PM Ticket #501 (bysequence or byentity keywords) closed by Tom Goddard
fixed: Uncle. I replace color command bysequence with byentity and …

Dec 8, 2016:

3:52 PM 2016-12-08 edited by Tom Ferrin
(diff)
3:33 PM 2016-12-08 edited by Elaine Meng
(diff)
3:29 PM Ticket #502 (findclash misleading and wrong) created by Elaine Meng
ChimeraX findclash gives different results from Chimera findclash and …
2:54 PM DeveloperMeetings edited by Tom Ferrin
(diff)
2:53 PM 2016-12-08 created by Tom Ferrin
12:26 PM Ticket #501 (bysequence or byentity keywords) created by Elaine Meng
I find the "bysequence" and "sequence" keywords (in commands "color" …

Dec 7, 2016:

4:22 PM Ticket #498 (blank atomspecs cause errors) closed by Greg Couch
fixed: Reverted to grako 3.16.5.
2:27 PM FAI edited by pett
(diff)
12:46 PM FAI edited by pett
(diff)
11:44 AM Ticket #214 (Save image dialog bitrot) closed by Conrad Huang
wontfix: Since the switch to Qt, there has been no per-image-format options.
10:27 AM Ticket #411 (Copyright messes up Mac installer html) closed by Conrad Huang
fixed: Looks like it's fixed.
10:18 AM Ticket #486 (Blast Protein GUI won't run) closed by Conrad Huang
fixed: Fixed in 2724b10. Somehow a class name got mangled in one …
10:15 AM Ticket #150 (Ribbon slow creation) closed by Conrad Huang
fixed: Ribbon display for 5a5b now takes about 2-3 seconds. Still not ideal …

Dec 6, 2016:

4:28 PM Ticket #407 (Update status line during long computations) reopened by Tom Goddard
The fix of calling Qt prcoessEvents(ExcludeUserInputEvents) …
11:08 AM Ticket #500 (Allow selecting through holes in mesh surface) created by tic20@…
Begin forwarded message: From: Tristan Croll Subject: Suggestion: …

Dec 5, 2016:

5:59 PM Ticket #299 (Ability to add tool-specific keywords to open command) closed by Greg Couch
fixed: Done. Added to metadata.
2:36 PM Ticket #499 (Error at startup on Linux) closed by Greg Couch
fixed: Should be fixed.
2:21 PM Ticket #492 (Log help links broken) closed by pett
fixed
12:55 PM 2016-12-01 edited by Greg Couch
(diff)
12:54 PM 2016-12-01 edited by Greg Couch
(diff)
12:48 PM Ticket #499 (Error at startup on Linux) created by Tom Goddard
ChimeraX gives the following error on startup on Ubuntu 16.04 LTS. $ …
12:31 PM Ticket #498 (blank atomspecs cause errors) created by Elaine Meng
If the atomspec is blank, none of the special color names (byhet, …
12:04 PM Ticket #497 (Using tug atoms or ISOLDE on Mac cannot find OpenMM CPU platform) closed by Tom Goddard
fixed: Fixed tug atoms to set OPENMM_PLUGINS_DIR on Mac. Tristan, you will …
11:58 AM Ticket #497 (Using tug atoms or ISOLDE on Mac cannot find OpenMM CPU platform) created by tic20@…
OpenMM can only find the reference platform on Mac when using ISOLDE …
11:20 AM Ticket #496 (Toolshed does not indicate if tool was successfully installed) created by Tom Goddard
Pressing the Download button on the ISOLDE toolshed entry gives no …
11:17 AM Ticket #495 (Toolshed cannot install tool, write permission error) created by tic20@…
The Mac ChimeraX installs in /Applications as root and toolshed cannot …
7:46 AM Ticket #494 (Dropping one floating window into another and then tearing it away ...) created by tic20@…
[…]

Dec 1, 2016:

5:20 PM 2016-12-01 edited by Greg Couch
(diff)
2:47 PM 2016-12-01 edited by Scooter Morris
(diff)
2:45 PM 2016-12-01 edited by Scooter Morris
(diff)
2:42 PM 2016-12-01 edited by Scooter Morris
(diff)
2:37 PM 2016-12-01 edited by Scooter Morris
(diff)
2:13 PM DeveloperMeetings edited by Scooter Morris
(diff)
2:13 PM 2016-12-01 created by Scooter Morris
12:52 PM Ticket #493 (measure phi/psi/chi/omega angles) created by tic20@…
Add Chimera1-like support for getting/setting phi/psi/chi/omega …

Nov 30, 2016:

2:51 PM Ticket #492 (Log help links broken) created by pett
Recent changes to HTML scheme handling have broken help links in the log.
10:25 AM Ticket #491 (Crash closing side view and opening shell) created by tic20@…
Crash on Linux after showing side view, then closing side view, then …
12:43 AM Ticket #490 (Alias with missing argument gives cryptic error) closed by Greg Couch
fixed: Fixed error message.

Nov 29, 2016:

5:13 PM Ticket #490 (Alias with missing argument gives cryptic error) created by meng@…
Using an alias without an argument gives a cryptic error message. It …
5:10 PM Ticket #487 (error trying to use perframe with alias) closed by Tom Goddard
invalid: This won't work because perframe knows nothing about expanding …
2:01 PM Ticket #489 (Don't show clipping caps for near/far clip planes.) created by Tom Goddard
Might want to not compute clipping caps for near/far clip planes. The …
1:50 PM Ticket #488 (Model panel view button should not enable clip planes) created by Tom Goddard
The Model Panel View button currently enables near/far clip plane as …

Nov 28, 2016:

4:37 PM Ticket #487 (error trying to use perframe with alias) created by Elaine Meng
Maybe it's user error, but I can't get my first perframe example in …
12:46 PM Ticket #486 (Blast Protein GUI won't run) created by Elaine Meng
Although I could run blast via command, showing the Blast Protein GUI, …

Nov 23, 2016:

5:32 PM Ticket #485 (Want collada export with hierarchy) created by Tom Goddard
Sam Hertig was exporting scenes from Chimera 1 using Collada for …
2:57 PM 2016-11-14 edited by Tom Goddard
(diff)
11:04 AM Ticket #461 (Ribbons don't update when coordinate set changes) closed by Tom Goddard
fixed: Fixed.

Nov 21, 2016:

7:25 PM Ticket #484 (Make contact graph mouse button behavior match graphics window (select ...) created by meng@…
Currently contact graph ctrl-left and right mouse button presses bring …
7:19 PM Ticket #483 (Smart display should use different colors for chains) created by Tom Goddard
Opening 4hhb (and other molecules with < 5) chains causes all the …
7:14 PM Ticket #482 (Contact graph hide/show chains ignores ribbons) created by Tom Goddard
Clicking on a contact graph chain node is supposed to hide the other …
5:18 PM 2016-11-14 edited by Tom Goddard
(diff)
2:16 PM FAI edited by Tom Goddard
(diff)
1:12 PM Ticket #481 (struts ignoring pbonds and accumulating inappropriately) closed by Tom Goddard
fixed: Fixed. Main problem was that backbone atoms hidden by ribbon were not …
10:22 AM Ticket #481 (struts ignoring pbonds and accumulating inappropriately) created by Elaine Meng
The "struts" command calculation is not paying attention to displayed …
Note: See TracTimeline for information about the timeline view.