Timeline



Aug 28, 2015:

6:48 PM Ticket #138 (Command-line does not receive ctrl-A, ctrl-E ... when graphics pane ...) created by Tom Goddard
The control characters for navigating to the beginning or end of the …

Aug 27, 2015:

5:38 PM Ticket #137 (Hiding ribbon leaves backbone atoms undisplayed) created by Tom Goddard
Hiding a ribbon leaves the backbone atoms belonging to that ribbon …
5:36 PM Ticket #136 (Deleting atoms does not update ribbon) created by Tom Goddard
Deleting atoms leaves the ribbon for those atoms still showing. open …
3:57 PM Ticket #135 (Main window does not have focus on start-up) created by Tom Goddard
On Mac the Chimera 2 main window does not have the focus when I start …
3:16 PM 2015-8-27 edited by Conrad Huang
(diff)
3:14 PM DeveloperMeetings edited by Conrad Huang
(diff)
3:13 PM 2015-8-27 created by Conrad Huang

Aug 26, 2015:

5:24 PM Ticket #134 (Smoother solvent excluded surface atom boundaries) created by Tom Goddard
Would like to avoid jagged defects in atom boundaries on solvent …
1:03 PM Ticket #99 (unable to clear status line before executing command) closed by pett
fixed

Aug 25, 2015:

11:21 AM Ticket #133 (CONECT record from alternate atom to itself) created by Tom Goddard
Reading the attached PDB file that was written by Chimera 1.10.2 …

Aug 24, 2015:

11:55 AM Ticket #132 (Deleting command history window leads to error) closed by pett
fixed

Aug 21, 2015:

6:05 PM Ticket #132 (Deleting command history window leads to error) created by Tom Goddard
command hide command show Deleting the command history window with the …

Aug 20, 2015:

3:28 PM DeveloperMeetings edited by Conrad Huang
(diff)
3:27 PM 2015-8-20 created by Conrad Huang

Aug 19, 2015:

6:23 PM Ticket #121 (String too long error opening mmCIF file) closed by Greg Couch
fixed: Agree that three_letter_code is better. Removed commented out code.
6:19 PM Ticket #113 (Linux installer has .bin suffix but is actually a .tar.gz) closed by Greg Couch
fixed: Changed to be a .tar.gz file.
6:19 PM Ticket #125 (mmCIF file reader should show at most one warning dialog) closed by Greg Couch
fixed: Using collating logger now.
5:37 PM Ticket #131 (Unknown invert atom type: N3) closed by pett
fixed: Turns out that iteration through an std::set is guaranteed to be …

Aug 18, 2015:

2:39 PM Needed Command Functionality edited by Elaine Meng
(diff)
2:38 PM Needed Command Functionality edited by Elaine Meng
(diff)
2:24 PM Needed Command Functionality edited by Elaine Meng
(diff)
2:22 PM Needed Command Functionality edited by Elaine Meng
added "potential renaming" section up top (diff)

Aug 13, 2015:

3:33 PM 2015-8-13 created by Conrad Huang
2:46 PM DeveloperMeetings edited by Conrad Huang
(diff)

Aug 12, 2015:

5:40 PM Ticket #131 (Unknown invert atom type: N3) created by Tom Goddard
Opening mmcif 128d twice gives an error "Unknown invert atom type: …

Aug 11, 2015:

4:54 PM Ticket #129 (MODRES insufficient to determine polymers) closed by pett
fixed
1:19 PM Ticket #124 (Preference so warnings don't show a dialog) closed by Tom Goddard
fixed: I added a "warningDialog true|false" option to the log command. Set …
10:58 AM Ticket #130 (Atom typing bug) created by pett
Apparently there is a mis-translation in the atom typing code because …

Aug 10, 2015:

6:20 PM Ticket #128 (mmCIF reader crashes on 4ffh) closed by Greg Couch
fixed: Fixed. Was problem with sheet ranges where the end residue was before …
5:33 PM Ticket #129 (MODRES insufficient to determine polymers) created by pett
Some non-standard polymeric residues are not described in MODRES …
5:06 PM Ticket #127 (Opening 1jj2 pdb format is slow) closed by pett
fixed: When residue names were switched over to fixed strings, PDBio was no …
5:00 PM Ticket #126 (RNA residues have in_chain false) closed by pett
fixed
4:59 PM Ticket #128 (mmCIF reader crashes on 4ffh) created by Tom Goddard
open mmcif:4ffh produces the following crash. Process: …
3:15 PM Ticket #127 (Opening 1jj2 pdb format is slow) created by Tom Goddard
Opening 1jj2 in pdb format takes 6 seconds, while a 3 week old (July …
2:50 PM Ticket #126 (RNA residues have in_chain false) created by Tom Goddard
Most or all RNA residues have in_chain false. For example open 1h4s …

Aug 6, 2015:

5:42 PM Ticket #125 (mmCIF file reader should show at most one warning dialog) created by Tom Goddard
The PDB file reader collapses all warnings and presents them in one …
5:40 PM Ticket #124 (Preference so warnings don't show a dialog) created by Tom Goddard
Currently warnings that occur when opening a PDB or mmCIF file show a …
5:24 PM Ticket #123 (Crash in num_chains for 4v6w.cif) closed by pett
fixed: Slight mis-translation of constrained_match (off by 1 error)

Aug 5, 2015:

1:46 PM Ticket #123 (Crash in num_chains for 4v6w.cif) created by Tom Goddard
open mmcif:4v6w sym #1 assembly 1 Produces a crash (segmentation …

Aug 4, 2015:

5:05 PM Ticket #122 (Shortcut to select all text in Log) created by Tom Goddard
The normal Apple shortcut Command-A doesn't select all text in the …
5:03 PM Ticket #121 (String too long error opening mmCIF file) created by Tom Goddard
Opening the mmcif file …

Aug 3, 2015:

4:48 PM Ticket #120 (Dragging panel in produces ~wxWindowBase() error) created by Tom Goddard
Drag side view panel out. Then drag it back into Chimera on far right …
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