The following bug report has been submitted:
Platform: macOS-13.2.1-arm64-arm-64bit
ChimeraX Version: 1.6rc202305042315 (2023-05-04 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x000000029672b000 (most recent call first):
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 576 in _handle_results
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000029571f000 (most recent call first):
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 528 in _handle_tasks
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000000294713000 (most recent call first):
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/selectors.py", line 416 in select
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/connection.py", line 936 in wait
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 499 in _wait_for_updates
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 519 in _handle_workers
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000000293707000 (most recent call first):
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00000002926fb000 (most recent call first):
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00000002916ef000 (most recent call first):
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00000002906e3000 (most recent call first):
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000028f6d7000 (most recent call first):
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000028e6cb000 (most recent call first):
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000028d6bf000 (most recent call first):
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000028c6b3000 (most recent call first):
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Current thread 0x00000001dcc38140 (most recent call first):
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.6-rc2023.05.04.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
{"app_name":"ChimeraX","timestamp":"2023-05-09 10:08:39.00 +0800","app_version":"1.6.0","slice_uuid":"a5992708-d5b4-36ec-ac0a-e525f6105b56","build_version":"1.6.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 13.2.1 (22D68)","roots_installed":0,"name":"ChimeraX","incident_id":"AC8377B2-132E-45D5-98AC-004680E62A10"}
{
"uptime" : 15000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "Mac14,3",
"coalitionID" : 1199,
"osVersion" : {
"train" : "macOS 13.2.1",
"build" : "22D68",
"releaseType" : "User"
},
"captureTime" : "2023-05-09 10:08:23.7532 +0800",
"incident" : "AC8377B2-132E-45D5-98AC-004680E62A10",
"pid" : 1140,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2023-05-08 20:43:22.6286 +0800",
"procStartAbsTime" : 26776183583,
"procExitAbsTime" : 370423355902,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.6-rc2023.05.04.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.6.0","CFBundleVersion":"1.6.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"4E7477D7-A574-5B57-8D79-A234858B461D","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "0BC5BA0A-2427-1CCA-9EEF-B855C7A47417",
"throttleTimeout" : 2147483647,
"wakeTime" : 1,
"sleepWakeUUID" : "5D66A283-6AF1-43F0-8800-9A07149725E4",
"sip" : "enabled",
"vmRegionInfo" : "0x18 is not in any region. Bytes before following region: 105553518919656\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO (reserved) 600018000000-600020000000 [128.0M] rw-\/rwx SM=NUL ...(unallocated)",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000018","rawCodes":[1,24],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000018"},
"vmregioninfo" : "0x18 is not in any region. Bytes before following region: 105553518919656\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO (reserved) 600018000000-600020000000 [128.0M] rw-\/rwx SM=NUL ...(unallocated)",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
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"uuid" : "6b8373ed-7142-34ea-9b4b-9f502e8a6f33",
"path" : "\/Applications\/ChimeraX-1.6-rc2023.05.04.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
"name" : "libopenblas64_.0.dylib"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
}
],
"vmSummary" : "ReadOnly portion of Libraries: Total=1.6G resident=0K(0%) swapped_out_or_unallocated=1.6G(100%)\nWritable regions: Total=2.7G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.7G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 384K 3 \nActivity Tracing 256K 1 \nCG backing stores 768K 4 \nCG image 1312K 56 \nColorSync 592K 29 \nCoreAnimation 1488K 74 \nCoreGraphics 48K 3 \nCoreUI image data 5776K 58 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 982.4M 745 \nMALLOC guard page 192K 11 \nMALLOC_MEDIUM (reserved) 808.0M 8 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)\nMach message 64K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 704K 44 \nStack 336.6M 45 \nStack Guard 56.0M 1 \nVM_ALLOCATE 215.2M 347 \nVM_ALLOCATE (reserved) 128.0M 1 reserved VM address space (unallocated)\n__AUTH 1938K 361 \n__AUTH_CONST 24.9M 589 \n__CTF 756 1 \n__DATA 19.9M 723 \n__DATA_CONST 37.8M 733 \n__DATA_DIRTY 1984K 229 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__LINKEDIT 796.0M 142 \n__OBJC_CONST 4758K 325 \n__OBJC_RO 65.5M 1 \n__OBJC_RW 1988K 1 \n__TEXT 825.8M 753 \ndyld private memory 256K 1 \nmapped file 522.3M 84 \nshared memory 3280K 29 \n=========== ======= ======= \nTOTAL 5.0G 5415 \nTOTAL, minus reserved VM space 3.8G 5415 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "60186475825c62000ccf5450",
"factorPackIds" : {
},
"deploymentId" : 240000026
},
{
"rolloutId" : "6297d96be2c9387df974efa4",
"factorPackIds" : {
},
"deploymentId" : 240000008
}
],
"experiments" : [
]
},
"reportNotes" : [
"dyld_process_snapshot_create_for_process failed with 5"
]
}
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.6rc202305042315 (2023-05-04)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/AAY97586.1/DYDDY_EYENEY/10-30/10DDYDDY-
> AAY97586.1-964030_ranked_9.pdb"
Chain information for 10DDYDDY-AAY97586.1-964030_ranked_9.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/AAY97586.1/DYDDY_EYENEY/30-10/30EYENEY-
> AAY97586.1-615910_ranked_11.pdb"
Chain information for 30EYENEY-AAY97586.1-615910_ranked_11.pdb #2
---
Chain | Description
A | No description available
B | No description available
> close #1
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/AAY97586.1/DYDDY_EYENEY/10-30/10DDYDDY-
> AAY97586.1-964030_ranked_9.pdb" format pdb
Chain information for 10DDYDDY-AAY97586.1-964030_ranked_9.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/AZI15425.1/DPWYP/30DPWYP-AZI15425.1-807710_ranked_21.pdb"
Chain information for 30DPWYP-AZI15425.1-807710_ranked_21.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/AZI15532.1/DPWMP/30DPWMP-AZI15532.1-656810_ranked_23.pdb"
Chain information for 30DPWMP-AZI15532.1-656810_ranked_23.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/BAX64741.1/DLHWQP/30DLHWQP-BAX64741.1-823910_ranked_6.pdb"
Chain information for 30DLHWQP-BAX64741.1-823910_ranked_6.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> copy #1/A
Unknown command: sequence copy #1/A
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/NP_040185.1/DVIEF_DGEDF/25DGEDF-NP_040185.1-952925_ranked_19.pdb"
Chain information for 25DGEDF-NP_040185.1-952925_ranked_19.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/NP_040519.1/DLRWAP/10DLRWAP-NP_040519.1-683830_ranked_23.pdb"
Chain information for 10DLRWAP-NP_040519.1-683830_ranked_23.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/NP_040850.1/EGEDF_EDEF/10EGEDF-NP_040850.1-294330_ranked_1.pdb"
Chain information for 10EGEDF-NP_040850.1-294330_ranked_1.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/NP_040918.1/DLRWQP/25DLRWQP-NP_040918.1-124625_ranked_16.pdb"
Chain information for 25DLRWQP-NP_040918.1-124625_ranked_16.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/NP_042988.1/DHQDW_ENYDF/10-30/10DHQDW-
> NP_042988.1-321930_ranked_8.pdb"
Chain information for 10DHQDW-NP_042988.1-321930_ranked_8.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/NP_042988.1/DHQDW_ENYDF/25-25/25ENYDF-
> NP_042988.1-497025_ranked_3.pdb"
Chain information for 25ENYDF-NP_042988.1-497025_ranked_3.pdb #2
---
Chain | Description
A | No description available
B | No description available
> hide #1 models
> color #2 bychain
> hide #2 models
> show #1 models
> close #2
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/NP_042988.1/DHQDW_ENYDF/25-25/25ENYDF-
> NP_042988.1-497025_ranked_14.pdb"
Chain information for 25ENYDF-NP_042988.1-497025_ranked_14.pdb #2
---
Chain | Description
A | No description available
B | No description available
> hide #1 models
> color #2 bychain
> close #2
> show #1 models
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/NP_050176.1/DPRVWVP/25-25/25DPRVWVP-
> NP_050176.1-133125_ranked_12.pdb"
Chain information for 25DPRVWVP-NP_050176.1-133125_ranked_12.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> hide #1 models
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/NP_050176.1/DPRVWVP/30-10/30DPRVWVP-
> NP_050176.1-108610_ranked_0.pdb"
Chain information for 30DPRVWVP-NP_050176.1-108610_ranked_0.pdb #2
---
Chain | Description
A | No description available
B | No description available
> color #2 bychain
> hide #2 models
> show #1 models
> hide #1 models
> show #2 models
> show #1 models
> close #1
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 2/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/NP_536443.1/ESNNTWIP/30ESNNTWIP-NP_536443.1-289310_ranked_1.pdb"
Chain information for 30ESNNTWIP-NP_536443.1-289310_ranked_1.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding
> sites)/EEEEF_EDDY/10-30/10EEEEF-EPI_ISL_402124-ORF1a-679230_ranked_22.pdb"
Chain information for 10EEEEF-EPI_ISL_402124-ORF1a-679230_ranked_22.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding
> sites)/EEEEF_EDDY/25-25/25EEEEF-EPI_ISL_402124-ORF1a-416725_ranked_23.pdb"
Chain information for 25EEEEF-EPI_ISL_402124-ORF1a-416725_ranked_23.pdb #2
---
Chain | Description
A | No description available
B | No description available
> hide #1 models
> color #2 bychain
> close #1
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 2/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding sites)/Others but only
> one binding site/10DDDY-EPI_ISL_402124-ORF1ab-99330_ranked_9.pdb"
Chain information for 10DDDY-EPI_ISL_402124-ORF1ab-99330_ranked_9.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding sites)/Others but only
> one binding site/10DNVTDF-EPI_ISL_402124-ORF1ab-609630_ranked_7.pdb"
Chain information for 10DNVTDF-EPI_ISL_402124-ORF1ab-609630_ranked_7.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding sites)/Others but only
> one binding site/10DVEW-EPI_ISL_402124-ORF1ab-560230_ranked_11.pdb"
Chain information for 10DVEW-EPI_ISL_402124-ORF1ab-560230_ranked_11.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding sites)/Others but only
> one binding site/25ELEDF-EPI_ISL_402124-ORF1ab-310625_ranked_24.pdb"
Chain information for 25ELEDF-EPI_ISL_402124-ORF1ab-310625_ranked_24.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding sites)/Others but only
> one binding site/30DPYEDF-EPI_ISL_402124-ORF1a-96810_ranked_20.pdb"
Chain information for 30DPYEDF-EPI_ISL_402124-ORF1a-96810_ranked_20.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding sites)/Others but only
> one binding site/30DWYDF-EPI_ISL_402124-ORF1ab-166810_ranked_0.pdb"
Chain information for 30DWYDF-EPI_ISL_402124-ORF1ab-166810_ranked_0.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding sites)/Others but only
> one binding site/30DWYDF-EPI_ISL_402124-ORF1ab-166810_ranked_21.pdb"
Chain information for 30DWYDF-EPI_ISL_402124-ORF1ab-166810_ranked_21.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding sites)/Others but only
> one binding site/30EDDY-EPI_ISL_402124-ORF1a-737310_ranked_9.pdb"
Chain information for 30EDDY-EPI_ISL_402124-ORF1a-737310_ranked_9.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding sites)/Others but only
> one binding site/30DWYDF-EPI_ISL_402124-ORF1ab-166810_ranked_21.pdb"
Chain information for 30DWYDF-EPI_ISL_402124-ORF1ab-166810_ranked_21.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding sites)/Others but only
> one binding site/30DPYEDF-EPI_ISL_402124-ORF1a-96810_ranked_20.pdb"
Chain information for 30DPYEDF-EPI_ISL_402124-ORF1a-96810_ranked_20.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding sites)/Others but only
> one binding site/25ELEDF-EPI_ISL_402124-ORF1ab-310625_ranked_24.pdb"
Chain information for 25ELEDF-EPI_ISL_402124-ORF1ab-310625_ranked_24.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding sites)/Others but only
> one binding site/10DVEW-EPI_ISL_402124-ORF1ab-560230_ranked_11.pdb"
Chain information for 10DVEW-EPI_ISL_402124-ORF1ab-560230_ranked_11.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding sites)/Others but only
> one binding site/10DNVTDF-EPI_ISL_402124-ORF1ab-609630_ranked_7.pdb"
Chain information for 10DNVTDF-EPI_ISL_402124-ORF1ab-609630_ranked_7.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding sites)/Others but only
> one binding site/30DWYDF-EPI_ISL_402124-ORF1ab-166810_ranked_0.pdb"
Chain information for 30DWYDF-EPI_ISL_402124-ORF1ab-166810_ranked_0.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding sites)/Others but only
> one binding site/30DPYEDF-EPI_ISL_402124-ORF1a-96810_ranked_20.pdb"
Chain information for 30DPYEDF-EPI_ISL_402124-ORF1a-96810_ranked_20.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding sites)/Others but only
> one binding site/25ELEDF-EPI_ISL_402124-ORF1ab-310625_ranked_24.pdb"
Chain information for 25ELEDF-EPI_ISL_402124-ORF1ab-310625_ranked_24.pdb #2
---
Chain | Description
A | No description available
B | No description available
> close #1
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding sites)/Others but only
> one binding site/10DVEW-EPI_ISL_402124-ORF1ab-560230_ranked_11.pdb"
Chain information for 10DVEW-EPI_ISL_402124-ORF1ab-560230_ranked_11.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding sites)/Others but only
> one binding site/10DNVTDF-EPI_ISL_402124-ORF1ab-609630_ranked_7.pdb"
Chain information for 10DNVTDF-EPI_ISL_402124-ORF1ab-609630_ranked_7.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding sites)/Others but only
> one binding site/10DDDY-EPI_ISL_402124-ORF1ab-99330_ranked_14.pdb"
Chain information for 10DDDY-EPI_ISL_402124-ORF1ab-99330_ranked_14.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SARS2_ORF1a1b (ONLY nsp3 has two binding sites)/Others but only
> one binding site/10DDDY-EPI_ISL_402124-ORF1ab-99330_ranked_14.pdb"
Chain information for 10DDDY-EPI_ISL_402124-ORF1ab-99330_ranked_14.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/SMD53709.1/DDYDLWLP/10DDYDLWLP-SMD53709.1-863330_ranked_2.pdb"
Chain information for 10DDYDLWLP-SMD53709.1-863330_ranked_2.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_073755.1/ESDDEY_ESDF/25ESDDEY-
> YP_073755.1-494925_ranked_16.pdb"
Chain information for 25ESDDEY-YP_073755.1-494925_ranked_16.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_081610.1/DVSWDP/10-30/10DVSWDP-
> YP_081610.1-680830_ranked_4.pdb"
Chain information for 10DVSWDP-YP_081610.1-680830_ranked_4.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_081610.1/DVSWDP/25-25/25DVSWDP-
> YP_081610.1-560825_ranked_6.pdb"
Chain information for 25DVSWDP-YP_081610.1-560825_ranked_6.pdb #2
---
Chain | Description
A | No description available
B | No description available
> hide #1 models
> color #2 bychain
> hide #2 models
> show #1 models
> close #1
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_081610.1/DVSWDP/10-30/10DVSWDP-
> YP_081610.1-680830_ranked_14.pdb"
Chain information for 10DVSWDP-YP_081610.1-680830_ranked_14.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color #1 bychain
> close #2
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_081619.1/DDEDWKP/10-30/10DDEDWKP-
> YP_081619.1-918430_ranked_0.pdb"
Chain information for 10DDEDWKP-YP_081619.1-918430_ranked_0.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_081619.1/DDEDWKP/10-30/10DDEDWKP-
> YP_081619.1-918430_ranked_2.pdb"
Chain information for 10DDEDWKP-YP_081619.1-918430_ranked_2.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> hide #1 models
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_081619.1/DDEDWKP/25-25/25DDEDWKP-
> YP_081619.1-777825_ranked_3.pdb"
Chain information for 25DDEDWKP-YP_081619.1-777825_ranked_3.pdb #2
---
Chain | Description
A | No description available
B | No description available
> color #2 bychain
> close #2
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_081619.1/DDEDWKP/25-25/25DDEDWKP-
> YP_081619.1-777825_ranked_5.pdb"
Chain information for 25DDEDWKP-YP_081619.1-777825_ranked_5.pdb #2
---
Chain | Description
A | No description available
B | No description available
> color #2 bychain
> hide #2 models
> show #1 models
> hide #1 models
> show #1 models
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A
Alignment identifier is 1/A
> hide #1 models
> close #1
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_081619.1/DDEDWKP/25-25/25DDEDW-
> YP_081619.1-864725_ranked_5.pdb"
Chain information for 25DDEDW-YP_081619.1-864725_ranked_5.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color #1 bychain
> close #1
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_081619.1/DDEDWKP/25-25/25DDEDWKP-
> YP_081619.1-777825_ranked_16.pdb"
Chain information for 25DDEDWKP-YP_081619.1-777825_ranked_16.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color #1 bychain
> close #1
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_081619.1/DDEDWKP/25-25/25DDEDW-
> YP_081619.1-864725_ranked_0.pdb"
Chain information for 25DDEDW-YP_081619.1-864725_ranked_0.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color #1 bychain
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A
Alignment identifier is 1/A
> ui tool show "Show Sequence Viewer"
> sequence chain #2/A
Alignment identifier is 2/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_238482.1/DSEDDWFP/25-25/25DSEDDW-
> YP_238482.1-905225_ranked_4.pdb"
Chain information for 25DSEDDW-YP_238482.1-905225_ranked_4.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_238482.1/DSEDDWFP/30-10/30DSEDDWFP-
> YP_238482.1-952810_ranked_9.pdb"
Chain information for 30DSEDDWFP-YP_238482.1-952810_ranked_9.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_238482.1/DSEDDWFP/25-25/25DSEDDW-
> YP_238482.1-905225_ranked_3.pdb"
Chain information for 25DSEDDW-YP_238482.1-905225_ranked_3.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_401644.1/DDWY_DESWDY/25-25/25DESWDY-
> YP_401644.1-60625_ranked_16.pdb"
Chain information for 25DESWDY-YP_401644.1-60625_ranked_16.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_401644.1/DDWY_DESWDY/30-10/30DEDY-
> YP_401644.1-217010_ranked_11.pdb"
Chain information for 30DEDY-YP_401644.1-217010_ranked_11.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color byhetero
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_401644.1/DDWY_DESWDY/30-10/30DEDY-
> YP_401644.1-217010_ranked_0.pdb"
Chain information for 30DEDY-YP_401644.1-217010_ranked_0.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_401644.1/DDWY_DESWDY/30-10/30DESWDY-
> YP_401644.1-538810_ranked_11.pdb"
Chain information for 30DESWDY-YP_401644.1-538810_ranked_11.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> hide #1 models
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_401644.1/DDWY_DESWDY/25-25/25DESWDY-
> YP_401644.1-60625_ranked_2.pdb"
Chain information for 25DESWDY-YP_401644.1-60625_ranked_2.pdb #2
---
Chain | Description
A | No description available
B | No description available
> color #2 bychain
> hide #2 models
> show #1 models
> hide #1 models
> show #2 models
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A
Alignment identifier is 1/A
> select #1/A:2
17 atoms, 17 bonds, 1 residue, 1 model selected
> select #1/A:2-6
72 atoms, 73 bonds, 5 residues, 1 model selected
> close #1
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 2/A
> select /A:42
12 atoms, 11 bonds, 1 residue, 1 model selected
> select /A:42-45
60 atoms, 60 bonds, 4 residues, 1 model selected
> select /A:26
12 atoms, 11 bonds, 1 residue, 1 model selected
> select /A:26-31
95 atoms, 97 bonds, 6 residues, 1 model selected
> select /A:13
12 atoms, 11 bonds, 1 residue, 1 model selected
> select /A:13-16
69 atoms, 71 bonds, 4 residues, 1 model selected
> select /A:42-43
27 atoms, 26 bonds, 2 residues, 1 model selected
> select /A:42-45
60 atoms, 60 bonds, 4 residues, 1 model selected
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_401644.1/DDWY_DESWDY/25-25/25DESWDY-
> YP_401644.1-60625_ranked_16.pdb"
Chain information for 25DESWDY-YP_401644.1-60625_ranked_16.pdb #1
---
Chain | Description
A | No description available
B | No description available
> ui tool show "Show Sequence Viewer"
> sequence chain #2/A #1/A
Alignment identifier is 1
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_401671.1/DNVPPWLP/10DNVPPWLP-YP_401671.1-114930_ranked_12.pdb"
Chain information for 10DNVPPWLP-YP_401671.1-114930_ranked_12.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_401676.1/DEEF_EDGEF/25DVQREF-YP_401676.1-645825_ranked_3.pdb"
Chain information for 25DVQREF-YP_401676.1-645825_ranked_3.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_401676.1/DEEF_EDVQREF/25DEEF-YP_401676.1-107425_ranked_21.pdb"
Chain information for 25DEEF-YP_401676.1-107425_ranked_21.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_001129418.1/DGAWLP/10-30/10DGAWLP-
> YP_001129418.1-144430_ranked_2.pdb"
Chain information for 10DGAWLP-YP_001129418.1-144430_ranked_2.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_001129418.1/DGAWLP/30-10/30DGAWLP-
> YP_001129418.1-820310_ranked_4.pdb"
Chain information for 30DGAWLP-YP_001129418.1-820310_ranked_4.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_001129418.1/DGAWLP/10-30/10DGAWLP-
> YP_001129418.1-144430_ranked_12.pdb"
Chain information for 10DGAWLP-YP_001129418.1-144430_ranked_12.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_001129418.1/DGAWLP/10-30/10DGAWLP-
> YP_001129418.1-144430_ranked_7.pdb"
Chain information for 10DGAWLP-YP_001129418.1-144430_ranked_7.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_001129418.1/DGAWLP/10-30/10DGAWLP-
> YP_001129418.1-144430_ranked_2.pdb"
Chain information for 10DGAWLP-YP_001129418.1-144430_ranked_2.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_001129418.1/DGAWLP/30-10/30DGAWLP-
> YP_001129418.1-820310_ranked_0.pdb"
Chain information for 30DGAWLP-YP_001129418.1-820310_ranked_0.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_001129463.1/EGPWVP/30EGPWVP-YP_001129463.1-35910_ranked_0.pdb"
Chain information for 30EGPWVP-YP_001129463.1-35910_ranked_0.pdb #2
---
Chain | Description
A | No description available
B | No description available
> close #1
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_001129463.1/EGPWVP/30EGPWVP-YP_001129463.1-35910_ranked_0.pdb"
Chain information for 30EGPWVP-YP_001129463.1-35910_ranked_0.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_001285395.1/DDDDLWLP/25DDDDLWLP-
> YP_001285395.1-405325_ranked_18.pdb"
Chain information for 25DDDDLWLP-YP_001285395.1-405325_ranked_18.pdb #2
---
Chain | Description
A | No description available
B | No description available
> close #1
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 2/A
> select /A:12
12 atoms, 11 bonds, 1 residue, 1 model selected
> select /A:12-15
54 atoms, 53 bonds, 4 residues, 1 model selected
> select /A:26
12 atoms, 11 bonds, 1 residue, 1 model selected
> select /A:26-35
152 atoms, 156 bonds, 10 residues, 1 model selected
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_002213776.1/EPWMP/30EPWMP-YP_002213776.1-668410_ranked_19.pdb"
Chain information for 30EPWMP-YP_002213776.1-668410_ranked_19.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_003090286.1/ESDEY_EVEREWF/10-30/10DESDEY-
> YP_003090286.1-531230_ranked_18.pdb"
Chain information for 10DESDEY-YP_003090286.1-531230_ranked_18.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_003090287.1/ESDEY_EVEREWF/25-25/25EVEREW-
> YP_003090287.1-653025_ranked_6.pdb"
Chain information for 25EVEREW-YP_003090287.1-653025_ranked_6.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> hide #1 models
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_003090287.1/ESDEY_EVEREWF/30-10/30EVEREW-
> YP_003090287.1-230510_ranked_16.pdb"
Chain information for 30EVEREW-YP_003090287.1-230510_ranked_16.pdb #2
---
Chain | Description
A | No description available
B | No description available
> color #2 bychain
> close #2
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_003090287.1/ESDEY_EVEREWF/30-10/30EVEREW-
> YP_003090287.1-230510_ranked_19.pdb"
Chain information for 30EVEREW-YP_003090287.1-230510_ranked_19.pdb #2
---
Chain | Description
A | No description available
B | No description available
> color #2 bychain
> close #2
> show #1 models
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> select /A:40
12 atoms, 11 bonds, 1 residue, 1 model selected
> select /A:40-46
104 atoms, 105 bonds, 7 residues, 1 model selected
> select /A:6
12 atoms, 11 bonds, 1 residue, 1 model selected
> select /A:6-11
86 atoms, 86 bonds, 6 residues, 1 model selected
> select /A:31
24 atoms, 25 bonds, 1 residue, 1 model selected
> select /A:25-31
124 atoms, 125 bonds, 7 residues, 1 model selected
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_003090287.1/ESDEY_EVEREWF/25-25/25EVEREW-
> YP_003090287.1-653025_ranked_6.pdb"
Chain information for 25EVEREW-YP_003090287.1-653025_ranked_6.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_003090287.1/ESDEY_EVEREWF/30-10/30EVEREW-
> YP_003090287.1-230510_ranked_15.pdb"
Chain information for 30EVEREW-YP_003090287.1-230510_ranked_15.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_003275951.1/EAEY_EIDREWF/10ESEEY-
> YP_003275951.1-53530_ranked_23.pdb"
Chain information for 10ESEEY-YP_003275951.1-53530_ranked_23.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_006905855.1/EDSDEY_EAEWF/10EDSDEY-
> YP_006905855.1-747330_ranked_7.pdb"
Chain information for 10EDSDEY-YP_006905855.1-747330_ranked_7.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_006905858.1/DDSEDF_EIEREWF/10-30/10DDSEDF-
> YP_006905858.1-463730_ranked_2.pdb"
Chain information for 10DDSEDF-YP_006905858.1-463730_ranked_2.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_006905858.1/DDSEDF_EIEREWF/25-25/25DDSEDF-
> YP_006905858.1-847425_ranked_14.pdb"
Chain information for 25DDSEDF-YP_006905858.1-847425_ranked_14.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_006905858.1/DDSEDF_EIEREWF/25-25/25DDSEDF-
> YP_006905858.1-847425_ranked_12.pdb"
Chain information for 25DDSEDF-YP_006905858.1-847425_ranked_12.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bypolymer
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_006905858.1/DDSEDF_EIEREWF/25-25/25DPEDY-
> YP_006905858.1-761425_ranked_20.pdb"
Chain information for 25DPEDY-YP_006905858.1-761425_ranked_20.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_006905858.1/DDSEDF_EIEREWF/25-25/25DPEDY-
> YP_006905858.1-761425_ranked_11.pdb"
Chain information for 25DPEDY-YP_006905858.1-761425_ranked_11.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_006905858.1/DDSEDF_EIEREWF/30-10/30DPEDY-
> YP_006905858.1-942110_ranked_9.pdb"
Chain information for 30DPEDY-YP_006905858.1-942110_ranked_9.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_006905858.1/DDSEDF_EIEREWF/30-10/30EIEREW-
> YP_006905858.1-133410_ranked_6.pdb"
Chain information for 30EIEREW-YP_006905858.1-133410_ranked_6.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_007641404.1/DDDDLWLP/30DDDDLWLP-
> YP_007641404.1-723710_ranked_11.pdb"
Chain information for 30DDDDLWLP-YP_007641404.1-723710_ranked_11.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_009047079.1/DEEY_DIEAEW/25DIEAEW-
> YP_009047079.1-963425_ranked_21.pdb"
Chain information for 25DIEAEW-YP_009047079.1-963425_ranked_21.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> close
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_009408406.1/DMWTP/30DMWTP-YP_009408406.1-710210_ranked_1.pdb"
Chain information for 30DMWTP-YP_009408406.1-710210_ranked_1.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
QPainter::begin: Paint device returned engine == 0, type: 3
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.6rc202305042315 (2023-05-04)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/yangxin/Downloads/All_virus+SARS2--DEFYW with two binding sites
> or DWP/PDB/YP_001285395.1/DDDDLWLP/25DDDDLWLP-
> YP_001285395.1-405325_ranked_18.pdb"
Chain information for 25DDDDLWLP-YP_001285395.1-405325_ranked_18.pdb #1
---
Chain | Description
A | No description available
B | No description available
OpenGL version: 4.1 Metal - 83
OpenGL renderer: Apple M2
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: Mac mini
Model Identifier: Mac14,3
Model Number: MMFJ3CH/A
Chip: Apple M2
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 8 GB
System Firmware Version: 8419.80.7
OS Loader Version: 8419.80.7
Software:
System Software Overview:
System Version: macOS 13.2.1 (22D68)
Kernel Version: Darwin 22.3.0
Time since boot: 1 day, 43 minutes
Graphics/Displays:
Apple M2:
Chipset Model: Apple M2
Type: GPU
Bus: Built-In
Total Number of Cores: 10
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
U28P2G6B:
Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6rc202305042315
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.2.22
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Previously this problem was associated with multiple displays but only one is reported here -- but maybe there were two when the crash actually occurred?