![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Closed 3 years ago
#8962 closed defect (can't reproduce)
Crash at exit
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.2.4 (2021-05-14 07:23:00 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [2723]
Path: /Applications/ChimeraX-1.2.4.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.2.4 (1.2.4.0)
Code Type: X86-64 (Translated)
Parent Process: ??? [1]
Responsible: ChimeraX [2723]
User ID: 501
Date/Time: 2023-05-08 10:11:10.290 +0200
OS Version: macOS 11.5.2 (20G95)
Report Version: 12
Anonymous UUID: 1A1A936F-EFDC-1EF1-1BE0-5588EFE4CA43
Sleep/Wake UUID: FC970F73-A295-454F-8F85-0EEAE84836D3
Time Awake Since Boot: 29000 seconds
Time Since Wake: 2300 seconds
System Integrity Protection: disabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0xb17eccb1d6b2c212 -> 0x00004cb1d6b2c212 (possible pointer authentication failure)
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x4cb1d6b2c212:
GPU Carveout (reserved) 1000000000-7000000000 [384.0G] ---/--- SM=NUL reserved VM address space (unallocated)
-->
MALLOC_NANO 600000000000-600008000000 [128.0M] rw-/rwx SM=PRV
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2037392e __pthread_kill + 10
2 libsystem_c.dylib 0x00007fff20286bd5 raise + 26
3 libsystem_platform.dylib 0x00007fff203e7d7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 sip.cpython-38-darwin.so 0x0000000126888b19 sip_api_visit_wrappers + 105
6 QtCore.abi3.so 0x000000012367528c cleanup_on_exit(_object*, _object*) + 12
7 org.python.python 0x000000010a8c47f6 cfunction_vectorcall_NOARGS + 214
8 org.python.python 0x000000010a887dad PyVectorcall_Call + 109
9 org.python.python 0x000000010a9f1b91 atexit_callfuncs + 113
10 org.python.python 0x000000010a997bcf Py_FinalizeEx + 79
11 org.python.python 0x000000010a9b967b Py_RunMain + 1659
12 org.python.python 0x000000010a9b9bdf pymain_main + 223
13 org.python.python 0x000000010a9b9aeb Py_Main + 43
14 edu.ucsf.cgl.ChimeraX 0x000000010233cdc8 main + 120
15 libdyld.dylib 0x00007fff203bdf3d start + 1
Thread 1:: com.apple.rosetta.exceptionserver
0 runtime 0x00007ffdffc5ea28 0x7ffdffc5a000 + 18984
1 runtime 0x00007ffdffc63eec 0x7ffdffc5a000 + 40684
2 runtime 0x00007ffdffc652c0 0x7ffdffc5a000 + 45760
Thread 2:
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036fcde __psynch_cvwait + 10
2 libopenblas.0.dylib 0x000000010c96327b blas_thread_server + 507
3 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 3:
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036fcde __psynch_cvwait + 10
2 libopenblas.0.dylib 0x000000010c96327b blas_thread_server + 507
3 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 4:
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036fcde __psynch_cvwait + 10
2 libopenblas.0.dylib 0x000000010c96327b blas_thread_server + 507
3 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 5:
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036fcde __psynch_cvwait + 10
2 libopenblas.0.dylib 0x000000010c96327b blas_thread_server + 507
3 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 6:
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036fcde __psynch_cvwait + 10
2 libopenblas.0.dylib 0x000000010c96327b blas_thread_server + 507
3 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 7:
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036fcde __psynch_cvwait + 10
2 libopenblas.0.dylib 0x000000010c96327b blas_thread_server + 507
3 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 8:
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036fcde __psynch_cvwait + 10
2 libopenblas.0.dylib 0x000000010c96327b blas_thread_server + 507
3 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 9:: ThreadPoolServiceThread
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff203761d2 kevent64 + 10
2 QtWebEngineCore 0x000000012c75ccc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000012c6e562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000012c6a97cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000012c6f0a94 base::internal::ServiceThread::Run(base::RunLoop*) + 20
6 QtWebEngineCore 0x000000012c704a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000012c74de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 10:: ThreadPoolForegroundWorker
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012c752492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012c6fa778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000012c6fb150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000012c6facd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000012c74de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 11:: ThreadPoolBackgroundWorker
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012c752492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012c6fa778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000012c6fb150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000012c6fac44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x000000012c74de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 12:: Chrome_IOThread
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff203761d2 kevent64 + 10
2 QtWebEngineCore 0x000000012c75ccc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000012c6e562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000012c6a97cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000130629f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102
6 QtWebEngineCore 0x000000012c704a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000012c74de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 13:: NetworkConfigWatcher
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012c752492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012c7522cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000012c67a1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000012c6e562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000012c6a97cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000012c704a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000012c74de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 14:: CompositorTileWorker1
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036fcde __psynch_cvwait + 10
2 QtWebEngineCore 0x000000012c749e18 base::ConditionVariable::Wait() + 104
3 QtWebEngineCore 0x000000012da015f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56
4 QtWebEngineCore 0x000000012c74de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
5 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 15:: Chrome_InProcGpuThread
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012c752492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012c67a20f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x000000012c6e562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x000000012c6a97cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x000000012c704a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000012c74de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 16:: Chrome_ChildIOThread
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff203761d2 kevent64 + 10
2 QtWebEngineCore 0x000000012c75ccc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000012c6e562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000012c6a97cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000012c704a7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x000000012c74de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 17:: VizCompositorThread
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012c752492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012c67a20f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x000000012c6e562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x000000012c6a97cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x000000012c704a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000012c74de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 18:: ThreadPoolSingleThreadForegroundBlocking0
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012c752492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012c7522cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000012c6fa76a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000012c6fb150 base::internal::WorkerThread::RunWorker() + 1024
6 QtWebEngineCore 0x000000012c6fad34 base::internal::WorkerThread::RunDedicatedWorker() + 20
7 QtWebEngineCore 0x000000012c74de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 19:: NetworkConfigWatcher
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012c752492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012c7522cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000012c67a1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000012c6e562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000012c6a97cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000012c704a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000012c74de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 20:: MemoryInfra
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012c752492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012c7522cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000012c67a1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000012c6e562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000012c6a97cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000012c704a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000012c74de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 21:: com.apple.NSEventThread
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036d2ba mach_msg_trap + 10
2 com.apple.CoreFoundation 0x00007fff2049b855 __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff20499f0b __CFRunLoopRun + 1332
4 com.apple.CoreFoundation 0x00007fff20499310 CFRunLoopRunSpecific + 567
5 com.apple.AppKit 0x00007fff22d5123a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 22:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012c752492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012c7522cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000012c6fa76a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000012c6fae3d base::internal::WorkerThread::RunWorker() + 237
6 QtWebEngineCore 0x000000012c6fac74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20
7 QtWebEngineCore 0x000000012c74de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 23:
0 runtime 0x00007ffdffc7c7c8 0x7ffdffc5a000 + 141256
Thread 24:
0 runtime 0x00007ffdffc7c7c8 0x7ffdffc5a000 + 141256
Thread 25:
0 runtime 0x00007ffdffc7c7c8 0x7ffdffc5a000 + 141256
Thread 26:
0 runtime 0x00007ffdffc7c7c8 0x7ffdffc5a000 + 141256
Thread 27:
0 runtime 0x00007ffdffc7c7c8 0x7ffdffc5a000 + 141256
Thread 28:
0 runtime 0x00007ffdffc7c7c8 0x7ffdffc5a000 + 141256
Thread 29:
0 runtime 0x00007ffdffc7c7c8 0x7ffdffc5a000 + 141256
Thread 30:
0 runtime 0x00007ffdffc7c7c8 0x7ffdffc5a000 + 141256
Thread 31:
0 runtime 0x00007ffdffc7c7c8 0x7ffdffc5a000 + 141256
Thread 32:
0 runtime 0x00007ffdffc7c7c8 0x7ffdffc5a000 + 141256
Thread 33:
0 runtime 0x00007ffdffc7c7c8 0x7ffdffc5a000 + 141256
Thread 34:: ThreadPoolForegroundWorker
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012c752492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012c6fa778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000012c6fb150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000012c6facd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000012c74de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 35:: ThreadPoolForegroundWorker
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012c752492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012c6fa778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000012c6fb150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000012c6facd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000012c74de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 36:: ThreadPoolForegroundWorker
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012c752492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012c6fa778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000012c6fb150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000012c6facd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000012c74de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 37:: ThreadPoolForegroundWorker
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012c752492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012c6fa778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000012c6fb150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000012c6facd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000012c74de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 38:: ThreadPoolForegroundWorker
0 ??? 0x00007ffe945da8f4 ???
1 libsystem_kernel.dylib 0x00007fff2036d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012c752492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012c6fa778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000012c6fae3d base::internal::WorkerThread::RunWorker() + 237
5 QtWebEngineCore 0x000000012c6facd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000012c74de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203a28fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2039e443 thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000202460e00 rcx: 0x0000000000000000 rdx: 0xffffffffffffffff
rdi: 0x35769c539804ebd6 rsi: 0x000000014eeaf088 rbp: 0x35769c539804ebd6 rsp: 0x000000014eeaf088
r8: 0x000000000000000b r9: 0x35769c539804ebd6 r10: 0x0000000202460e00 r11: 0x00007fff20286bbb
r12: 0x0000000000000103 r13: 0x00000000000001ef r14: 0x000000000000000b r15: 0x0000000000000016
rip: rfl: 0x0000000000000283
Binary Images:
0x10233c000 - 0x10233cfff +edu.ucsf.cgl.ChimeraX (1.2.4 - 1.2.4.0) /Applications/ChimeraX-1.2.4.app/Contents/MacOS/ChimeraX
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0x7fff37a90000 - 0x7fff37cdafff com.apple.CMCapture (1.0 - 82.6) /System/Library/PrivateFrameworks/CMCapture.framework/Versions/A/CMCapture
0x7fff386d6000 - 0x7fff386e5fff com.apple.HID (1.0 - 1) /System/Library/PrivateFrameworks/HID.framework/Versions/A/HID
0x7fff386e6000 - 0x7fff3880dfff com.apple.QuickLookUIFramework (5.0 - 928.4) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuickLookUI.framework/Versions/A/QuickLookUI
0x7fff3880e000 - 0x7fff3882bfff com.apple.IOGPU (21.11 - 21.11) /System/Library/PrivateFrameworks/IOGPU.framework/Versions/A/IOGPU
0x7fff38cbe000 - 0x7fff38cfefff com.apple.MediaServices (1.0 - 1) /System/Library/PrivateFrameworks/MediaServices.framework/Versions/A/MediaServices
0x7fff38dfa000 - 0x7fff38dfafff com.apple.marco (10.0 - 1000) /System/Library/PrivateFrameworks/Marco.framework/Versions/A/Marco
0x7fff394ae000 - 0x7fff394b5fff com.apple.URLFormatting (146 - 146.22) /System/Library/PrivateFrameworks/URLFormatting.framework/Versions/A/URLFormatting
0x7fff3bf17000 - 0x7fff3bf39fff com.apple.quicklook.QuickLookSupport (1.0 - 135.5) /System/Library/PrivateFrameworks/QuickLookSupport.framework/Versions/A/QuickLookSupport
0x7fff3bf3a000 - 0x7fff3bfd1fff com.apple.AirPlaySync (1.0 - 2780.10) /System/Library/PrivateFrameworks/AirPlaySync.framework/Versions/A/AirPlaySync
0x7fff3cb62000 - 0x7fff3cbe5fff com.apple.CorePDF (4.0 - 529) /System/Library/PrivateFrameworks/CorePDF.framework/Versions/A/CorePDF
0x7fff3cbe6000 - 0x7fff3cbe9fff com.apple.print.framework.Print (15 - 271) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
0x7fff3cbea000 - 0x7fff3cbedfff com.apple.Carbon (160 - 164) /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x7fff3cce6000 - 0x7fff3cce6fff com.apple.avfoundation (2.0 - 2020.10) /System/Library/Frameworks/AVFoundation.framework/Versions/A/AVFoundation
0x7fff3cea0000 - 0x7fff3cebffff com.apple.private.SystemPolicy (1.0 - 1) /System/Library/PrivateFrameworks/SystemPolicy.framework/Versions/A/SystemPolicy
0x7fff3d063000 - 0x7fff3d080fff com.apple.sidecar-core (1.0 - 231) /System/Library/PrivateFrameworks/SidecarCore.framework/Versions/A/SidecarCore
0x7fff3d081000 - 0x7fff3d084fff com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem
0x7fff3d49c000 - 0x7fff3d4a2fff com.apple.FeatureFlagsSupport (1.0 - 28.60.1) /System/Library/PrivateFrameworks/FeatureFlagsSupport.framework/Versions/A/FeatureFlagsSupport
0x7fff3d613000 - 0x7fff3d62afff com.apple.SafariServices.framework (16611 - 16611.3.10.1.6) /System/Library/Frameworks/SafariServices.framework/Versions/A/SafariServices
0x7fff3d7dd000 - 0x7fff3d7e8fff com.apple.MallocStackLogging (1.0 - 1) /System/Library/PrivateFrameworks/MallocStackLogging.framework/Versions/A/MallocStackLogging
0x7fff3d7fd000 - 0x7fff3d80ffff libmis.dylib (274.140.2) /usr/lib/libmis.dylib
0x7fff3d82c000 - 0x7fff3d99bfff com.apple.CoreHandwriting (161 - 1.2) /System/Library/PrivateFrameworks/CoreHandwriting.framework/Versions/A/CoreHandwriting
0x7fff3d99c000 - 0x7fff3dbf7fff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x7fff3dbf8000 - 0x7fff3dd0efff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff3dd0f000 - 0x7fff3dd20fff com.apple.sidecar-ui (1.0 - 231) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff3e343000 - 0x7fff3e3a5fff com.apple.ImageCaptureCore (1711.5.2 - 1711.5.2) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x7fff3e3a6000 - 0x7fff3e3cbfff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x7fff3e617000 - 0x7fff3e779fff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer
0x7fff3e77a000 - 0x7fff3ea5bfff com.apple.iTunesCloud (1.0 - 1) /System/Library/PrivateFrameworks/iTunesCloud.framework/Versions/A/iTunesCloud
0x7fff3ea87000 - 0x7fff3ebb3fff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x7fff3ebb4000 - 0x7fff3f054fff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x7fff3f055000 - 0x7fff3f13dfff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x7fff4109c000 - 0x7fff4109ffff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff414c4000 - 0x7fff414e1fff libCGInterfaces.dylib (544.4) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff43a70000 - 0x7fff43ce3fff com.apple.RawCamera.bundle (9.10.0 - 1450.3) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff4454c000 - 0x7fff44550fff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x7fff45ec7000 - 0x7fff45ecafff libpmenergy.dylib (227.140.1) /usr/lib/libpmenergy.dylib
0x7fff47bec000 - 0x7fff47c2cfff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff4847a000 - 0x7fff48495fff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff518a9000 - 0x7fff51948fff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff51b38000 - 0x7fff51b3bfff libpmsample.dylib (227.140.1) /usr/lib/libpmsample.dylib
0x7fff541df000 - 0x7fff54215fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff5580c000 - 0x7fff5580ffff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff69908000 - 0x7fff6990cfff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6bd53000 - 0x7fff6bd59fff libCoreFSCache.dylib (200.10) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6bd5a000 - 0x7fff6bd5efff libCoreVMClient.dylib (200.10) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6bd5f000 - 0x7fff6bd6efff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6bd6f000 - 0x7fff6bd71fff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6bd72000 - 0x7fff6bd7afff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6bd7b000 - 0x7fff6bdaefff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6bdaf000 - 0x7fff6bdebfff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6bdec000 - 0x7fff6bf7ffff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bf80000 - 0x7fff6bf8afff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6bf8b000 - 0x7fff6c108fff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6c109000 - 0x7fff6c131fff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d3ca000 - 0x7fff6d422fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e4cc000 - 0x7fff6e4d3fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e4d4000 - 0x7fff6e5bbfff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6fb39000 - 0x7fff6fb4bfff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73e4d000 - 0x7fff73e58fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff7406e000 - 0x7fff74086fff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff77bfe000 - 0x7fff77c05fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
Translated Code Information:
tmp0: 0xffffffffffffffff tmp1: 0x00007ffe945da8c8 tmp2: 0x00007fff20373924
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%)
Writable regions: Total=26.8G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=26.8G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 384K 3
Activity Tracing 256K 1
CG backing stores 2016K 6
CG image 76K 19
CoreAnimation 44K 9
CoreGraphics 12K 2
CoreUI image data 1132K 17
Foundation 32K 2
Kernel Alloc Once 8K 1
MALLOC 23.5G 950
MALLOC guard page 192K 8
MALLOC_MEDIUM (reserved) 704.0M 8 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)
Mach message 8K 2
OpenGL GLSL 256K 3
Rosetta Arena 4096K 2
Rosetta Generic 1504K 373
Rosetta JIT 128.0M 1
Rosetta Return Stack 760K 76
Rosetta Thread Context 760K 76
STACK GUARD 44K 11
Stack 161.6M 38
Stack Guard 56.1M 27
VM_ALLOCATE 452.4M 348
VM_ALLOCATE (reserved) 160.1M 10 reserved VM address space (unallocated)
__DATA 30.3M 575
__DATA_CONST 21.7M 262
__DATA_DIRTY 1259K 170
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 597.0M 137
__OBJC_RO 70.3M 1
__OBJC_RW 2480K 2
__TEXT 568.9M 552
__UNICODE 588K 1
mapped file 4.6G 952
shared memory 856K 25
unshared pmap 8704K 5
=========== ======= =======
TOTAL 31.1G 4678
TOTAL, minus reserved VM space 30.1G 4678
System Profile:
Network Service: Wi-Fi, AirPort, en0
Boot Volume File System Type: apfs
Memory Module: LPDDR4
USB Device: USB 3.1 Bus
USB Device: USB 3.1 Bus
Thunderbolt Bus: MacBook Pro, Apple Inc.
Thunderbolt Bus: MacBook Pro, Apple Inc.
Model: MacBookPro17,1, BootROM 6723.140.2, proc 8:4:4 processors, 16 GB, SMC
Graphics: kHW_AppleM1Item, Apple M1, spdisplays_builtin
AirPort: spairport_wireless_card_type_airport_extreme, wl0: Jul 7 2021 00:48:27 version 18.50.40.10.7.8.121 FWID 01-f5ad2691
Bluetooth: Version 8.0.5d7, 3 services, 27 devices, 1 incoming serial ports
Log:
UCSF ChimeraX version: 1.2.4 (2021-05-14)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_0.pdb
Chain information for luc_morph_0.pdb #1
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_1.pdb
Chain information for luc_morph_1.pdb #2
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_2.pdb
Chain information for luc_morph_2.pdb #3
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_8.pdb
Chain information for luc_morph_8.pdb #4
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_7.pdb
Chain information for luc_morph_7.pdb #5
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_6.pdb
Chain information for luc_morph_6.pdb #6
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_5.pdb
Chain information for luc_morph_5.pdb #7
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_4.pdb
Chain information for luc_morph_4.pdb #8
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_3.pdb
Chain information for luc_morph_3.pdb #9
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_9.pdb
Chain information for luc_morph_9.pdb #10
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_10.pdb
Chain information for luc_morph_10.pdb #11
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_11.pdb
Chain information for luc_morph_11.pdb #12
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_12.pdb
Chain information for luc_morph_12.pdb #13
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_13.pdb
Chain information for luc_morph_13.pdb #14
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_14.pdb
Chain information for luc_morph_14.pdb #15
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_20.pdb
Chain information for luc_morph_20.pdb #16
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_19.pdb
Chain information for luc_morph_19.pdb #17
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_18.pdb
Chain information for luc_morph_18.pdb #18
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_17.pdb
Chain information for luc_morph_17.pdb #19
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_16.pdb
Chain information for luc_morph_16.pdb #20
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_15.pdb
Chain information for luc_morph_15.pdb #21
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_21.pdb
Chain information for luc_morph_21.pdb #22
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_22.pdb
Chain information for luc_morph_22.pdb #23
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_23.pdb
Chain information for luc_morph_23.pdb #24
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_24.pdb
Chain information for luc_morph_24.pdb #25
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_25.pdb
Chain information for luc_morph_25.pdb #26
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_26.pdb
Chain information for luc_morph_26.pdb #27
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_32.pdb
Chain information for luc_morph_32.pdb #28
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_31.pdb
Chain information for luc_morph_31.pdb #29
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_30.pdb
Chain information for luc_morph_30.pdb #30
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_29.pdb
Chain information for luc_morph_29.pdb #31
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_28.pdb
Chain information for luc_morph_28.pdb #32
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_27.pdb
Chain information for luc_morph_27.pdb #33
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_33.pdb
Chain information for luc_morph_33.pdb #34
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_34.pdb
Chain information for luc_morph_34.pdb #35
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_35.pdb
Chain information for luc_morph_35.pdb #36
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_36.pdb
Chain information for luc_morph_36.pdb #37
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_37.pdb
Chain information for luc_morph_37.pdb #38
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_38.pdb
Chain information for luc_morph_38.pdb #39
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_44.pdb
Chain information for luc_morph_44.pdb #40
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_43.pdb
Chain information for luc_morph_43.pdb #41
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_42.pdb
Chain information for luc_morph_42.pdb #42
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_41.pdb
Chain information for luc_morph_41.pdb #43
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_40.pdb
Chain information for luc_morph_40.pdb #44
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_39.pdb
Chain information for luc_morph_39.pdb #45
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_45.pdb
Chain information for luc_morph_45.pdb #46
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_46.pdb
Chain information for luc_morph_46.pdb #47
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_47.pdb
Chain information for luc_morph_47.pdb #48
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_48.pdb
Chain information for luc_morph_48.pdb #49
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_49.pdb
Chain information for luc_morph_49.pdb #50
---
Chain | Description
A | No description available
> open /Users/kmcantos/Documents/projects/assembly/flex-
> xlms/chimeraxmorph/luc/luc_morph_50.pdb
Chain information for luc_morph_50.pdb #51
---
Chain | Description
A | No description available
OpenGL version: 4.1 Metal - 71.7.1
OpenGL renderer: Apple M1
OpenGL vendor: AppleHardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro17,1
Processor Name: Unknown
Processor Speed: 2,4 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 4 MB
Memory: 16 GB
Software:
System Software Overview:
System Version: macOS 11.5.2 (20G95)
Kernel Version: Darwin 20.6.0
Time since boot: 3 days 24 minutes
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
DELL U2721DE:
Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
UI Looks like: 2560 x 1440 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.4.1
chardet: 3.0.4
ChimeraX-AddCharge: 1.0
ChimeraX-AddH: 2.1.6
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.13.3
ChimeraX-AtomicLibrary: 3.1.3
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.2.1
ChimeraX-CommandLine: 1.1.4
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.4
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.1.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.3
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.0.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.2.1
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0.1
ChimeraX-ModelPanel: 1.0.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.1
ChimeraX-OpenCommand: 1.5
ChimeraX-PDB: 2.4.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.1
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.3.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.7.4
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 5.0.7
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 2.0.0
matplotlib: 3.3.2
matplotlib-inline: 0.1.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.3
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.9
ParmEd: 3.2.0
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 21.0.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.18
psutil: 5.7.2
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pyzmq: 22.0.3
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
six: 1.15.0
snowballstemmer: 2.1.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash at exit |
comment:2 by , 3 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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