id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
20842	Modeller and seqalign invalid escape sequences	Tom Goddard	Eric Pettersen	"The ChimeraX test suite is complaining in nightly builds about a couple instances of invalid escape sequences in strings like \. and \s that will ""not work in the future"".  Not sure how they won't work, maybe they mean it will be a hard syntax error when importing the file.  At any rate it would be good to change them to the correct \\. and \\s so the test suite output is not littered.


tests/test_imports_app.py::test_imports[chimerax.modeller.common]
  /Users/runner/work/ChimeraX/ChimeraX/chimerax/modeller/common.py:607: SyntaxWarning: ""\."" is an invalid escape sequence. Such sequences will not work in the future. Did you mean ""\\.""? A raw string is also an option.
    generated_model_pattern = re.compile('.*\.B.*\.pdb') # aka *.B*.pdb

tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
  /Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:47: SyntaxWarning: ""\s"" is an invalid escape sequence. Such sequences will not work in the future. Did you mean ""\\s""? A raw string is also an option.
    'MSF:\s*(\S*)\s*'    # length?

tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
  /Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:48: SyntaxWarning: ""\s"" is an invalid escape sequence. Such sequences will not work in the future. Did you mean ""\\s""? A raw string is also an option.
    'Type:\s*(\S*)\s*'    # type

tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
  /Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:49: SyntaxWarning: ""\s"" is an invalid escape sequence. Such sequences will not work in the future. Did you mean ""\\s""? A raw string is also an option.
    '(.*)\s*'        # date/time

tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
  /Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:50: SyntaxWarning: ""\s"" is an invalid escape sequence. Such sequences will not work in the future. Did you mean ""\\s""? A raw string is also an option.
    'Check:\s*(\S*)\s*'    # checksum

tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
  /Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:51: SyntaxWarning: ""\."" is an invalid escape sequence. Such sequences will not work in the future. Did you mean ""\\.""? A raw string is also an option.
    '\.\.')            # signature

tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
  /Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:53: SyntaxWarning: ""\s"" is an invalid escape sequence. Such sequences will not work in the future. Did you mean ""\\s""? A raw string is also an option.
    'MSF:\s*(\S*)\s*'    # length?

tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
  /Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:56: SyntaxWarning: ""\s"" is an invalid escape sequence. Such sequences will not work in the future. Did you mean ""\\s""? A raw string is also an option.
    'Check:\s*(\S*)\s*'    # checksum

tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
  /Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:57: SyntaxWarning: ""\."" is an invalid escape sequence. Such sequences will not work in the future. Did you mean ""\\.""? A raw string is also an option.
    '\.\.')            # signature

tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
  /Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:60: SyntaxWarning: ""\s"" is an invalid escape sequence. Such sequences will not work in the future. Did you mean ""\\s""? A raw string is also an option.
    'Len:\s*(\S*)\s*'    # length

tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
  /Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:61: SyntaxWarning: ""\s"" is an invalid escape sequence. Such sequences will not work in the future. Did you mean ""\\s""? A raw string is also an option.
    'Check:\s*(\S*)\s*'    # checksum

tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
  /Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:62: SyntaxWarning: ""\s"" is an invalid escape sequence. Such sequences will not work in the future. Did you mean ""\\s""? A raw string is also an option.
    'Weight:\s*(\S*)\s*')    # weight"	defect	assigned	moderate		Core								all	ChimeraX