Opened 11 hours ago

Closed 10 hours ago

#19754 closed defect (nonchimerax)

Text shown as question marks on MacOS Tahoe

Reported by: manfred.heinlein@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Platform Version:
Keywords: Cc: todd.blevins@…, chimera-programmers
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

Forwarding to chimerax-bugs@cgl.ucsf.edu <mailto:chimerax-bugs@cgl.ucsf.edu>

Thus you don't need to send this specific report again, but for future reference, here is the contact info for ChimeraX (which is different than that for Chimera):

<https://www.rbvi.ucsf.edu/chimerax/docs/contact.html>


> Begin forwarded message:
> 
> From: Chimera Licensing <Chimera@ucsf.edu>
> Subject: RE: ChimeraX display problem
> Date: January 20, 2026 at 3:23:28 PM PST
> To: Manfred Heinlein <manfred.heinlein@ibmp-cnrs.unistra.fr>, "chimerax@cgl.ucsf.edu" <chimerax@cgl.ucsf.edu>
> Cc: Todd Blevins <todd.blevins@ibmp-cnrs.unistra.fr>, "chimera@cgl.ucsf.edu" <chimera@cgl.ucsf.edu>
> 
> Please send your email to the appropriate address so that your problem can be addressed.
>  
> https://www.cgl.ucsf.edu/chimera/docs/feedback.html
>  
> This email is used solely for commercial licensing purposes.
>  
> Kim
>  
> Chimera Licensing Team
> Department of Pharmaceutical Chemistry
> School of Pharmacy
> University of California, San Francisco
>  
> Learn more about ChimeraX commercial licensing <https://www.cgl.ucsf.edu/chimera/commercial_license.html>
>  
> _______________________________________
>  
> Learn More at UCSF.edu <https://www.ucsf.edu/> | Facebook <https://urldefense.proofpoint.com/v2/url?u=https-3A__urldefense.com_v3_-5F-5Fhttps-3A__www.facebook.com_ucsf-5F-5F-3B-21-21LQC6Cpwp-21tNdGfsvTEY6ZBjcO-2Da5mQiMDbq15I1t3QgTytRCVu-5FKbCLM-2D4YLcMPtxJYYHFjUcGSXiIdVlnigIEN7UcYxNKA-24&d=DwMFaQ&c=euGZstcaTDllvimEN8b7jXrwqOf-v5A_CdpgnVfiiMM&r=054OaAoYo6z8RJnrwJc6sSFmXkgnVutbqIHBO8URb2s&m=9jOZjjzN82QSz-KatHtZeUyO4P-BeSWz4POSnqiyfCHpW8Axu9b7kBtN5y2pex0V&s=w88qmwK4Yio8C0gXxY_tyoZPhpYf9g2Py2VvLU5OK6Y&e=> | Twitter <https://urldefense.proofpoint.com/v2/url?u=https-3A__urldefense.com_v3_-5F-5Fhttps-3A__twitter.com_ucsf-5F-5F-3B-21-21LQC6Cpwp-21tNdGfsvTEY6ZBjcO-2Da5mQiMDbq15I1t3QgTytRCVu-5FKbCLM-2D4YLcMPtxJYYHFjUcGSXiIdVlnigIEN6B9RYTGQ-24&d=DwMFaQ&c=euGZstcaTDllvimEN8b7jXrwqOf-v5A_CdpgnVfiiMM&r=054OaAoYo6z8RJnrwJc6sSFmXkgnVutbqIHBO8URb2s&m=9jOZjjzN82QSz-KatHtZeUyO4P-BeSWz4POSnqiyfCHpW8Axu9b7kBtN5y2pex0V&s=keN-iMb_jK6GL8vwfaRgR5xyS02MPJfb-Ul806lTfkk&e=>
>  
> The information contained in this transmission may contain privileged and confidential information, including patient information protected by federal and state privacy laws. It is intended only for the use of the person(s) named above. If you are not the intended recipient you are hereby notified that any review, dissemination, distribution, or duplication of this communication is strictly prohibited. If you are not the intended recipient, please notify the sender by reply email and delete this email from your system. Failure to do so could result in legal action.
>  
> From: Manfred Heinlein <manfred.heinlein@ibmp-cnrs.unistra.fr <mailto:manfred.heinlein@ibmp-cnrs.unistra.fr>>
> Sent: Tuesday, January 20, 2026 2:39 AM
> To: chimerax@cgl.ucsf.edu <mailto:chimerax@cgl.ucsf.edu>
> Cc: Todd Blevins <todd.blevins@ibmp-cnrs.unistra.fr <mailto:todd.blevins@ibmp-cnrs.unistra.fr>>
> Subject: ChimeraX display problem
>  
> Hello, I am using a MacBookPro with OS Tahoe 26. 2 (Apple M1 Max, 64 GB memory, 2,8 TB available on hard disk) and suddenly encounter a display problem in ChimeraX where all letters are now shown as a question mark (see screenshots). The computer
> ZjQcmQRYFpfptBannerStart
> This Message Is From an External Sender
> This message came from outside your organization.
> ZjQcmQRYFpfptBannerEnd
> Hello,
> I am using a MacBookPro with OS Tahoe 26.2 (Apple M1 Max, 64 GB memory, 2,8 TB available on hard disk) and suddenly encounter a display problem in ChimeraX where all letters are now shown as a question mark (see screenshots). The computer has all fonts required for ChimeraX and now we do not know what else to check. We reinstalled the latest version of Chimera X and also tried earlier versions but this did not help. Neither restarting the mac improved this situation. Could this be an incompatibility with the latest OS software or with specific system settings? I would be grateful if you could let us know how we could proceed in solving this problem.
>  
> Best regards,
> Manfred Heinlein
> Senior Group Leader at IBMP
> _______________
>  
> Manfred Heinlein, PhD
> Institute of Plant Molecular Biology (CNRS) | University of Strasbourg
> 12, rue du Général Zimmer
> 67084 STRASBOURG
> France
> http://www.ibmp.cnrs.fr <https://urldefense.proofpoint.com/v2/url?u=https-3A__urldefense.com_v3_-5F-5Fhttp-3A_www.ibmp.cnrs.fr-5F-5F-3B-21-21LQC6Cpwp-21raRCPY1P-2DTnQaD6uNTL-5FDfPvKTqWDuREl94cSfeY9Rq-5FO7jfbk0UQ5-5FzuKqfG4uv-5FvFscUBB20NrKRPKf-2DLrJsPg1X9O3-2DmRG1t1rw-24&d=DwMFaQ&c=euGZstcaTDllvimEN8b7jXrwqOf-v5A_CdpgnVfiiMM&r=054OaAoYo6z8RJnrwJc6sSFmXkgnVutbqIHBO8URb2s&m=9jOZjjzN82QSz-KatHtZeUyO4P-BeSWz4POSnqiyfCHpW8Axu9b7kBtN5y2pex0V&s=tgGdAURAfD1ZCKoFoLwuarrAgvRp2ocrBd1gLAFkpFw&e=>
> Phone office          +33 (0) 3 67 15 53 59
> manfred.heinlein@ibmp-cnrs.unistra.fr <mailto:manfred.heinlein@ibmp-cnrs.unistra.fr>
>  
>  

>  


Added by email2trac

Added by email2trac

Attachments (2)

image001.png (226.2 KB ) - added by Elaine Meng 11 hours ago.
Added by email2trac
image002.png (426.0 KB ) - added by Elaine Meng 11 hours ago.
Added by email2trac

Download all attachments as: .zip

Change History (4)

by Elaine Meng, 11 hours ago

Attachment: image001.png added

Added by email2trac

by Elaine Meng, 11 hours ago

Attachment: image002.png added

Added by email2trac

comment:1 by Eric Pettersen, 10 hours ago

Cc: todd.blevins@… chimera-programmers added
Component: UnassignedPlatform
Owner: set to Tom Goddard
Platform: all
Project: ChimeraX
Reporter: changed from Elaine Meng to manfred.heinlein@…
Status: newassigned
Summary: Fwd: ChimeraX display problemText shown as question marks on MacOS Tahoe

Seems the same as #19549 and #18864

comment:2 by Tom Goddard, 10 hours ago

Resolution: nonchimerax
Status: assignedclosed

The question marks are caused by a Qt window toolkit bug where it find some "Times New Roman" font installed on your Mac which is not the system version and does not handle it properly. Sometimes this is installed by Microsoft tools. A heavy handed way to fix this is to use the "Reset Fonts" option under Mac Font Book app Settings. But that removes all your non-system fonts. So you might prefer to find the troublesome "Times New Roman" font in /Library/Fonts or /Library/Fonts/Microsoft or ~/Library/Fonts and remove or rename it.

More details are described here

https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/19549

Hopefully a future version of the Qt window toolkit will fix this bug. The ChimeraX daily build is using Qt 6.10 while the ChimeraX 1.11 version is using Qt 6.9 so just using the daily build could fix it.

Note: See TracTickets for help on using tickets.