Crash using color editor

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-12.7.4-x86_64-i386-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted

Thread 0x00007000182c1000 (most recent call first):
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 324 in wait
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 622 in wait
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1392 in run
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Current thread 0x00000001075cc600 (most recent call first):
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 275 in event_loop
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 918 in init
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main

Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.surface._surface, chimerax.map._map, chimerax.pdb_lib._load_libs, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, PIL._imagingmath (total: 53)


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{
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  "procLaunch" : "2024-05-22 22:58:13.2609 -0700",
  "procRole" : "Foreground",
  "version" : 2,
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    "releaseType" : "User"
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  "captureTime" : "2024-05-22 23:56:28.2435 -0700",
  "incident" : "2521A825-0A85-4203-9E94-FDF3A48FB7B5",
  "bug_type" : "309",
  "pid" : 22981,
  "procExitAbsTime" : 25524040173114,
  "cpuType" : "X86-64",
  "procName" : "ChimeraX",
  "procPath" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX",
  "bundleInfo" : {"CFBundleShortVersionString":"1.7.1","CFBundleVersion":"1.7.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
  "storeInfo" : {"deviceIdentifierForVendor":"9430A01F-322B-5188-8603-1968F28611ED","thirdParty":true},
  "parentProc" : "launchd",
  "parentPid" : 1,
  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
  "crashReporterKey" : "DC7D983A-80E1-A57E-21F4-51690D8B7796",
  "wakeTime" : 4366,
  "bridgeVersion" : {"build":"21P4222","train":"8.4"},
  "sleepWakeUUID" : "0CCD4FF4-C418-4530-8CC6-F8A26BF5A446",
  "sip" : "enabled",
  "isCorpse" : 1,
  "exception" : {"codes":"0x0000000000000000, 0x0000000000000000","rawCodes":[0,0],"type":"EXC_CRASH","signal":"SIGABRT"},
  "ktriageinfo" : "VM - Compressor failed a blocking pager_get\nVM - Compressor failed a blocking pager_get\nVM - Compressor failed a blocking pager_get\nVM - Compressor failed a blocking pager_get\nVM - Compressor failed a blocking pager_get\n",
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  "vmSummary" : "ReadOnly portion of Libraries: Total=1.5G resident=0K(0%) swapped_out_or_unallocated=1.5G(100%)\nWritable regions: Total=5.6G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=5.6G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework              1152K        9 \nActivity Tracing                   256K        1 \nCG backing stores                 3124K        9 \nCG image                          1460K       53 \nColorSync                          236K       28 \nCoreAnimation                     2848K      101 \nCoreGraphics                        16K        3 \nCoreUI image data                 5208K       55 \nFoundation                          32K        2 \nKernel Alloc Once                    8K        1 \nMALLOC                             4.9G     1467 \nMALLOC guard page                   32K        8 \nMALLOC_LARGE (reserved)            256K        1         reserved VM address space (unallocated)\nMach message                        16K        2 \nOpenGL GLSL                        384K        4 \nSTACK GUARD                        104K       26 \nStack                            171.7M       27 \nStack Guard                       56.0M        1 \nVM_ALLOCATE                      548.2M      622 \nVM_ALLOCATE (reserved)            32.0M        1         reserved VM address space (unallocated)\n__CTF                               756        1 \n__DATA                            46.7M      682 \n__DATA_CONST                      32.8M      349 \n__DATA_DIRTY                      1659K      218 \n__FONT_DATA                          4K        1 \n__GLSLBUILTINS                    5176K        1 \n__LINKEDIT                       677.2M      151 \n__OBJC_RO                         82.9M        1 \n__OBJC_RW                         3200K        2 \n__TEXT                           817.9M      683 \n__UNICODE                          592K        1 \ndyld private memory               1184K        3 \nmapped file                      530.3M       86 \nshared memory                     2984K       27 \n===========                     =======  ======= \nTOTAL                              7.8G     4627 \nTOTAL, minus reserved VM space     7.8G     4627 \n",
  "legacyInfo" : {
  "threadTriggered" : {
    "name" : "CrBrowserMain",
    "queue" : "com.apple.main-thread"
  }
},
  "trialInfo" : {
  "rollouts" : [
    {
      "rolloutId" : "61af99aeda72d16a4beb7756",
      "factorPackIds" : {
        "SIRI_DIALOG_ASSETS" : "629fe54ebc762c0b6f758b6b"
      },
      "deploymentId" : 240000409
    },
    {
      "rolloutId" : "5fb4245a1bbfe8005e33a1e1",
      "factorPackIds" : {

      },
      "deploymentId" : 240000021
    }
  ],
  "experiments" : [

  ]
}
}
===== Log before crash start =====
Startup Messages  
---  
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle  
  
UCSF ChimeraX version: 1.7.1 (2024-01-23)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_004.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_004.pdb #1  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_002_alphafold2_multimer_v3_model_5_seed_009.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_002_alphafold2_multimer_v3_model_5_seed_009.pdb #2  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_003_alphafold2_multimer_v3_model_5_seed_000.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_003_alphafold2_multimer_v3_model_5_seed_000.pdb #3  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_004_alphafold2_multimer_v3_model_5_seed_018.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_004_alphafold2_multimer_v3_model_5_seed_018.pdb #4  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_005_alphafold2_multimer_v3_model_3_seed_004.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_005_alphafold2_multimer_v3_model_3_seed_004.pdb #5  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_006_alphafold2_multimer_v3_model_3_seed_017.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_006_alphafold2_multimer_v3_model_3_seed_017.pdb #6  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_007_alphafold2_multimer_v3_model_3_seed_003.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_007_alphafold2_multimer_v3_model_3_seed_003.pdb #7  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_008_alphafold2_multimer_v3_model_5_seed_007.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_008_alphafold2_multimer_v3_model_5_seed_007.pdb #8  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_009_alphafold2_multimer_v3_model_2_seed_012.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_009_alphafold2_multimer_v3_model_2_seed_012.pdb #9  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_010_alphafold2_multimer_v3_model_3_seed_012.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_010_alphafold2_multimer_v3_model_3_seed_012.pdb #10  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_011_alphafold2_multimer_v3_model_4_seed_012.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_011_alphafold2_multimer_v3_model_4_seed_012.pdb #11  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_012_alphafold2_multimer_v3_model_3_seed_019.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_012_alphafold2_multimer_v3_model_3_seed_019.pdb #12  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_013_alphafold2_multimer_v3_model_5_seed_005.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_013_alphafold2_multimer_v3_model_5_seed_005.pdb #13  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_014_alphafold2_multimer_v3_model_3_seed_011.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_014_alphafold2_multimer_v3_model_3_seed_011.pdb #14  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_015_alphafold2_multimer_v3_model_4_seed_016.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_015_alphafold2_multimer_v3_model_4_seed_016.pdb #15  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_016_alphafold2_multimer_v3_model_5_seed_010.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_016_alphafold2_multimer_v3_model_5_seed_010.pdb #16  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_017_alphafold2_multimer_v3_model_5_seed_012.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_017_alphafold2_multimer_v3_model_5_seed_012.pdb #17  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_018_alphafold2_multimer_v3_model_5_seed_003.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_018_alphafold2_multimer_v3_model_5_seed_003.pdb #18  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_019_alphafold2_multimer_v3_model_5_seed_013.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_019_alphafold2_multimer_v3_model_5_seed_013.pdb #19  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_020_alphafold2_multimer_v3_model_5_seed_006.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_020_alphafold2_multimer_v3_model_5_seed_006.pdb #20  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_021_alphafold2_multimer_v3_model_3_seed_006.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_021_alphafold2_multimer_v3_model_3_seed_006.pdb #21  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_022_alphafold2_multimer_v3_model_5_seed_019.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_022_alphafold2_multimer_v3_model_5_seed_019.pdb #22  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_023_alphafold2_multimer_v3_model_2_seed_001.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_023_alphafold2_multimer_v3_model_2_seed_001.pdb #23  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_024_alphafold2_multimer_v3_model_2_seed_018.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_024_alphafold2_multimer_v3_model_2_seed_018.pdb #24  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_025_alphafold2_multimer_v3_model_5_seed_016.pdb"

Chain information for
QT2-4_3LC8_unrelaxed_rank_025_alphafold2_multimer_v3_model_5_seed_016.pdb #25  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> hide target m

> show #1 models

> undo

> color bychain

> hide atoms

> show cartoons

> hide target m

> show #1 models

> select #1/A:8

8 atoms, 7 bonds, 1 residue, 1 model selected  

> hide #1 models

> show #2 models

> hide #2 models

> show #3 models

> hide #3 models

> show #4 models

> hide #4 models

> show #5 models

> hide #5 models

> show #6 models

> hide #6 models

> show #7 models

> hide #7 models

> show #8 models

> hide #8 models

> show #9 models

> hide #9 models

> show #10 models

> show #11 models

> hide #10 models

> hide #11 models

> show #12 models

> hide #12 models

> show #13 models

> hide #13 models

> show #14 models

> hide #14 models

> show #15 models

> hide #15 models

> show #14 models

> hide #14 models

> show #6 models

> hide #6 models

> show #5 models

> hide #5 models

> show #16 models

> hide #16 models

> show #17 models

> hide #17 models

> show #18 models

> hide #18 models

> show #20 models

> show #19 models

> hide #20 models

> hide #19 models

> show #20 models

> hide #20 models

> show #21 models

> hide #21 models

> show #22 models

> hide #22 models

> show #23 models

> hide #23 models

> show #24 models

> hide #24 models

> show #25 models

> hide #25 models

> show #12 models

> hide #12 models

> show #24 models

> hide #24 models

> show #23 models

> hide #23 models

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_015.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_015.pdb #26  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_002_alphafold2_multimer_v3_model_5_seed_006.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_002_alphafold2_multimer_v3_model_5_seed_006.pdb #27  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_003_alphafold2_multimer_v3_model_5_seed_005.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_003_alphafold2_multimer_v3_model_5_seed_005.pdb #28  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_004_alphafold2_multimer_v3_model_5_seed_004.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_004_alphafold2_multimer_v3_model_5_seed_004.pdb #29  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_005_alphafold2_multimer_v3_model_5_seed_013.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_005_alphafold2_multimer_v3_model_5_seed_013.pdb #30  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_006_alphafold2_multimer_v3_model_5_seed_007.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_006_alphafold2_multimer_v3_model_5_seed_007.pdb #31  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_007_alphafold2_multimer_v3_model_5_seed_019.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_007_alphafold2_multimer_v3_model_5_seed_019.pdb #32  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_008_alphafold2_multimer_v3_model_5_seed_009.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_008_alphafold2_multimer_v3_model_5_seed_009.pdb #33  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_009_alphafold2_multimer_v3_model_3_seed_004.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_009_alphafold2_multimer_v3_model_3_seed_004.pdb #34  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_010_alphafold2_multimer_v3_model_3_seed_007.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_010_alphafold2_multimer_v3_model_3_seed_007.pdb #35  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_011_alphafold2_multimer_v3_model_3_seed_011.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_011_alphafold2_multimer_v3_model_3_seed_011.pdb #36  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_012_alphafold2_multimer_v3_model_3_seed_000.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_012_alphafold2_multimer_v3_model_3_seed_000.pdb #37  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_013_alphafold2_multimer_v3_model_5_seed_016.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_013_alphafold2_multimer_v3_model_5_seed_016.pdb #38  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_014_alphafold2_multimer_v3_model_5_seed_003.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_014_alphafold2_multimer_v3_model_5_seed_003.pdb #39  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_015_alphafold2_multimer_v3_model_2_seed_012.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_015_alphafold2_multimer_v3_model_2_seed_012.pdb #40  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_016_alphafold2_multimer_v3_model_5_seed_002.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_016_alphafold2_multimer_v3_model_5_seed_002.pdb #41  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_017_alphafold2_multimer_v3_model_2_seed_005.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_017_alphafold2_multimer_v3_model_2_seed_005.pdb #42  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_018_alphafold2_multimer_v3_model_2_seed_009.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_018_alphafold2_multimer_v3_model_2_seed_009.pdb #43  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_019_alphafold2_multimer_v3_model_3_seed_009.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_019_alphafold2_multimer_v3_model_3_seed_009.pdb #44  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_020_alphafold2_multimer_v3_model_2_seed_011.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_020_alphafold2_multimer_v3_model_2_seed_011.pdb #45  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_021_alphafold2_multimer_v3_model_1_seed_003.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_021_alphafold2_multimer_v3_model_1_seed_003.pdb #46  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_022_alphafold2_multimer_v3_model_1_seed_012.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_022_alphafold2_multimer_v3_model_1_seed_012.pdb #47  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_023_alphafold2_multimer_v3_model_5_seed_014.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_023_alphafold2_multimer_v3_model_5_seed_014.pdb #48  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_024_alphafold2_multimer_v3_model_1_seed_000.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_024_alphafold2_multimer_v3_model_1_seed_000.pdb #49  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> open "/Users/gretchen.fujimura/Desktop/QTs/ASCIZ
> Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_025_alphafold2_multimer_v3_model_1_seed_011.pdb"

Chain information for
QT23a4_3LC8_unrelaxed_rank_025_alphafold2_multimer_v3_model_1_seed_011.pdb #50  
---  
Chain | Description  
A B | No description available  
C D E F G H | No description available  
  

> hide #26-50 atoms

> show #26-50 cartoons

> hide target m

> show #26 models

> hide #26 models

> show #27 models

> hide #27 models

> show #26 models

> hide #26 models

> show #29 models

> hide #29 models

> show #33 models

> hide #33 models

> show #36 models

> hide #36 models

> show #40 models

> hide #40 models

> show #40 models

> hide #40 models

> show #37 models

> hide #37 models

> show #38 models

> hide #38 models

> show #39 models

> hide #39 models

> show #40 models

> hide #40 models

> show #41 models

> hide #41 models

> show #42 models

> hide #42 models

> show #43 models

> hide #43 models

> show #44 models

> hide #44 models

> show #45 models

> hide #45 models

> show #46 models

> hide #46 models

> show #47 models

> hide #47 models

> show #48 models

> hide #48 models

> show #49 models

> hide #49 models

> show #50 models

> show #26 models

> hide #50 models

> preset "overall look" "publication 2 (depth-cued)"

Using preset: Overall Look / Publication 2 (Depth-Cued)  
Preset expands to these ChimeraX commands:

    
    
    set bg white
    graphics silhouettes f
    lighting depthCue t

  

> hide #26 models

> show #2 models

> hide #2 models

> show #5 models

> color #5 bypolymer

> show #26 models

> select #26/A:7

11 atoms, 10 bonds, 1 residue, 1 model selected  

> ui tool show "Color Actions"

> hide #5 models

> select #26/A:43

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select up

228 atoms, 228 bonds, 27 residues, 1 model selected  

> select up

602 atoms, 608 bonds, 75 residues, 1 model selected  

> color sel cornflower blue

> color sel medium blue

> select clear

> select #26/A:42

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

228 atoms, 228 bonds, 27 residues, 1 model selected  

> select up

602 atoms, 608 bonds, 75 residues, 1 model selected  

> color sel cornflower blue

> select #26/B:43

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select up

228 atoms, 228 bonds, 27 residues, 1 model selected  

> select up

602 atoms, 608 bonds, 75 residues, 1 model selected  

> color sel cornflower blue

> select clear

> hide #26 models

> show #5 models

> select #5/A:40

11 atoms, 11 bonds, 1 residue, 1 model selected  

> select up

339 atoms, 349 bonds, 43 residues, 1 model selected  

> select up

556 atoms, 569 bonds, 70 residues, 1 model selected  

> color sel forest green

> select clear

> select #5/A:30

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select up

339 atoms, 349 bonds, 43 residues, 1 model selected  

> select up

556 atoms, 569 bonds, 70 residues, 1 model selected  

> color sel purple

> select clear

> select #5/B:54

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select up

432 atoms, 443 bonds, 55 residues, 1 model selected  

> select up

556 atoms, 569 bonds, 70 residues, 1 model selected  

> color sel purple

> select clear

> hide #5 models

> show #7 models

> hide #7 models

> show #6 models

> hide #6 models

> show #10 models

> hide #10 models

> show #9 models

> select #9/C:74

8 atoms, 7 bonds, 1 residue, 1 model selected  

> color sel light sea green

> ui tool show "Color Actions"

> color sel medium aquamarine

> color sel cadet blue

> color sel turquoise

> color sel light cyan

> color sel dark turquoise

> color sel medium spring green

> color sel dodger blue

> color sel turquoise

> color sel medium turquoise

> color sel light sea green

> color sel cornflower blue

> color sel dark cyan

> color sel medium aquamarine

> color sel teal

> color sel steel blue

> color sel cadet blue

> color sel light slate gray

> color sel slate gray

> color sel yellow green

> color sel dark khaki

> color sel olive drab

> color sel sea green

> color sel medium sea green

> color sel forest green

> color sel lime green

> color sel spring green

> color sel chartreuse

> color sel #abd9abff


===== Log before crash end =====

Log:
Startup Messages  
---  
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle  
  
UCSF ChimeraX version: 1.7.1 (2024-01-23)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 INTEL-18.8.16
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 645
OpenGL vendor: Intel Inc.

Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro16,3
      Processor Name: Quad-Core Intel Core i5
      Processor Speed: 1.4 GHz
      Number of Processors: 1
      Total Number of Cores: 4
      L2 Cache (per Core): 256 KB
      L3 Cache: 6 MB
      Hyper-Threading Technology: Enabled
      Memory: 8 GB
      System Firmware Version: 2022.100.22.0.0 (iBridge: 21.16.4222.0.0,0)
      OS Loader Version: 540.120.3~37

Software:

    System Software Overview:

      System Version: macOS 12.7.4 (21H1123)
      Kernel Version: Darwin 21.6.0
      Time since boot: 12:45

Graphics/Displays:

    Intel Iris Plus Graphics 645:

      Chipset Model: Intel Iris Plus Graphics 645
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x3ea6
      Revision ID: 0x0001
      Metal Family: Supported, Metal GPUFamily macOS 2
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        DELL U2520D:
          Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
          UI Looks like: 2560 x 1440 @ 60.00Hz
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Display Serial Number: J1MZ823     
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Adapter Type: DVI or HDMI
          Adapter Firmware Version: 15.30


Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.4.1
    Babel: 2.14.0
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2022.12.7
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.13
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.4.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.2
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.49.1
    ChimeraX-AtomicLibrary: 12.1.5
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.3.2
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.5
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7.1
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.8
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6.1
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.14
    ChimeraX-ModelPanel: 1.4
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.1
    ChimeraX-PDB: 2.7.3
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.2
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12.4
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.33.3
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.3.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.1
    contourpy: 1.2.0
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 0.29.33
    debugpy: 1.8.0
    decorator: 5.1.1
    docutils: 0.19
    executing: 2.0.1
    filelock: 3.9.0
    fonttools: 4.47.2
    funcparserlib: 2.0.0a0
    glfw: 2.6.4
    grako: 3.16.5
    h5py: 3.10.0
    html2text: 2020.1.16
    idna: 3.6
    ihm: 0.38
    imagecodecs: 2023.9.18
    imagesize: 1.4.1
    ipykernel: 6.23.2
    ipython: 8.14.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.1.1
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.2.0
    jupyter-core: 5.7.1
    jupyterlab-widgets: 3.0.9
    kiwisolver: 1.4.5
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.4
    matplotlib: 3.7.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.6.0
    netCDF4: 1.6.2
    networkx: 3.1
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.8
    numpy: 1.25.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.9.0
    pickleshare: 0.7.5
    pillow: 10.2.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 4.1.0
    prompt-toolkit: 3.0.43
    psutil: 5.9.5
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.16.1
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.2801
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2023.3.post1
    pyzmq: 25.1.2
    qtconsole: 5.4.3
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.11.1
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.5.0
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2023.7.18
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.4
    traitlets: 5.9.0
    typing-extensions: 4.9.0
    tzdata: 2023.4
    urllib3: 2.1.0
    wcwidth: 0.2.13
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.9