![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 17 months ago
Closed 17 months ago
#15280 closed defect (duplicate)
Crash in garbage collection
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.3.1-arm64-arm-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x0000000376b73000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 324 in wait
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 622 in wait
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1392 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Current thread 0x00000001e43b9c40 (most recent call first):
Garbage-collecting
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/weakref.py", line 576 in __init__
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py", line 1613 in remove_deleted_pointers
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py", line 134 in __init__
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py", line 807 in __init__
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/ctypes_support.py", line 31 in atoms
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molc.py", line 177 in get_prop
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/structure.py", line 782 in get_selected
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/selection.py", line 41 in
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/selection.py", line 41 in models
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/selection.py", line 45 in items
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/std_commands/select.py", line 167 in report_selection
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/std_commands/select.py", line 120 in select_add
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 2908 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/run.py", line 49 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/model_panel/tool.py", line 366 in _tree_change_cb
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 918 in init
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, chimerax.surface._surface, chimerax.pdb_lib._load_libs, openmm._openmm, openmm.app.internal.compiled, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, numpy.linalg.lapack_lite, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, lxml._elementpath, lxml.etree, PIL._imagingmath (total: 62)
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"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/binascii.cpython-311-darwin.so",
"name" : "binascii.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4307894272,
"size" : 16384,
"uuid" : "afcf6534-bc90-33a1-87bf-54c0486b936a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_sha512.cpython-311-darwin.so",
"name" : "_sha512.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4307107840,
"size" : 16384,
"uuid" : "d4d6e22d-4e3f-3ca5-903a-407b6193beb0",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_random.cpython-311-darwin.so",
"name" : "_random.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4307025920,
"size" : 16384,
"uuid" : "e168f48a-c7bf-33c4-939d-3437dceaf7ab",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bisect.cpython-311-darwin.so",
"name" : "_bisect.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4310695936,
"size" : 196608,
"uuid" : "d5041d58-8229-3070-90f7-89435745d455",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_lzma.cpython-311-darwin.so",
"name" : "_lzma.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4306944000,
"size" : 16384,
"uuid" : "09228711-c779-3a3a-9a84-37b1bb06c42b",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bz2.cpython-311-darwin.so",
"name" : "_bz2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4306829312,
"size" : 32768,
"uuid" : "f8442991-1d24-3c6f-a7a7-790c3a21a7cb",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/zlib.cpython-311-darwin.so",
"name" : "zlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4305338368,
"size" : 16384,
"uuid" : "2ab0848e-10ac-385d-96c9-1fcd525a67e4",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_typing.cpython-311-darwin.so",
"name" : "_typing.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4305158144,
"size" : 81920,
"uuid" : "e09e36d2-2e87-35de-9c91-30a33a6d9f79",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_datetime.cpython-311-darwin.so",
"name" : "_datetime.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4305420288,
"size" : 49152,
"uuid" : "14a2919a-96e1-3520-af80-d7d6f18b0b43",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/math.cpython-311-darwin.so",
"name" : "math.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4321837056,
"CFBundleShortVersionString" : "3.11.2, (c) 2001-2023 Python Software Foundation.",
"CFBundleIdentifier" : "org.python.python",
"size" : 3981312,
"uuid" : "39a95e29-4c8c-3208-8516-cfcc73eb7f4d",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/Python",
"name" : "Python",
"CFBundleVersion" : "3.11.2"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4302946304,
"CFBundleShortVersionString" : "1.7.1",
"CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX",
"size" : 16384,
"uuid" : "17982d98-65bc-3327-8526-577ec996453c",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX",
"name" : "ChimeraX",
"CFBundleVersion" : "1.7.1.0"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6671712256,
"size" : 241664,
"uuid" : "a7228b5d-53c7-3fe9-84e4-2a8c04dcf051",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6671953920,
"size" : 53236,
"uuid" : "449bbad3-f7ef-371d-9a59-fd4ffa78289b",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6670495744,
"size" : 520188,
"uuid" : "cc7a439e-f104-3047-995c-9a5a3cc4a442",
"path" : "\/usr\/lib\/system\/libsystem_c.dylib",
"name" : "libsystem_c.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6672162816,
"size" : 28668,
"uuid" : "785bf993-f73b-36c1-a5ba-ccce6c6da879",
"path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
"name" : "libsystem_platform.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6672375808,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 5079040,
"uuid" : "6030a572-b731-3f46-b3a0-2598fbb98c9a",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "2303"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6846521344,
"CFBundleShortVersionString" : "2.1.1",
"CFBundleIdentifier" : "com.apple.HIToolbox",
"size" : 2883584,
"uuid" : "db8a8b63-7bfb-384b-b0a9-c124675fbb39",
"path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
"name" : "HIToolbox"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6731231232,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.AppKit",
"size" : 20103168,
"uuid" : "873e5da0-bc01-399b-bf60-4066922d6a17",
"path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
"name" : "AppKit",
"CFBundleVersion" : "2487.40.107"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6668283904,
"size" : 607112,
"uuid" : "50746901-db0e-39a0-b391-baaa6b82ad0f",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
}
],
"sharedCache" : {
"base" : 6667534336,
"size" : 4065345536,
"uuid" : "c32b200e-cf99-3583-bc9f-b7fb11382e8f"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.8G resident=0K(0%) swapped_out_or_unallocated=1.8G(100%)\nWritable regions: Total=5.5G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=5.5G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 128K 1 \nActivity Tracing 256K 1 \nCG backing stores 9744K 2 \nCG image 560K 25 \nColorSync 640K 30 \nCoreAnimation 1136K 71 \nCoreGraphics 144K 9 \nCoreUI image data 5568K 48 \nFoundation 16K 1 \nKernel Alloc Once 32K 1 \nMALLOC 4.6G 200 \nMALLOC guard page 384K 24 \nMach message 64K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 56.7M 44 \nStack 181.0M 44 \nVM_ALLOCATE 296.5M 248 \nVM_ALLOCATE (reserved) 384.0M 6 reserved VM address space (unallocated)\n__AUTH 2728K 403 \n__AUTH_CONST 32.2M 623 \n__CTF 824 1 \n__DATA 26.0M 800 \n__DATA_CONST 42.2M 809 \n__DATA_DIRTY 1876K 229 \n__FONT_DATA 4K 1 \n__GLSLBUILTINS 5174K 1 \n__LINKEDIT 929.2M 181 \n__OBJC_RO 71.2M 1 \n__OBJC_RW 2171K 1 \n__TEXT 955.8M 827 \ndyld private memory 736K 6 \nmapped file 225.4M 59 \nshared memory 3216K 28 \n=========== ======= ======= \nTOTAL 7.8G 4732 \nTOTAL, minus reserved VM space 7.4G 4732 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "3017c5fb53b6c1f785a693896e078e298263bb2a",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "60f8ddccefea4203d95cbeef",
"factorPackIds" : {
},
"deploymentId" : 240000025
},
{
"rolloutId" : "632e3df958740028737bffc0",
"factorPackIds" : {
"SIRI_UNDERSTANDING_NL_OVERRIDES" : "661e78a3b714bf7f73d2b29e"
},
"deploymentId" : 240000670
}
],
"experiments" : [
{
"treatmentId" : "5d85d104-adc7-4ebf-8b7c-96d84fdad9cc",
"experimentId" : "6384d56b96e8d228551ec182",
"deploymentId" : 400000023
}
]
}
}
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/Chimera_session/20240513_TNFR2-2Fabs_20-22.cxs
> format session
Opened cryosparc_P128_J917_map_sharp_flip.mrc as #3, grid size 256,256,256,
pixel 0.813, shown at level 0.497, step 1, values float32
Opened deepemhancer_cryosparc_P128_J333_005_flip.mrc as #5, grid size
256,256,256, pixel 0.813, shown at level 0.201, step 1, values float32
Opened cryosparc_P128_cryosparc_P128_J594_005_volume_map.mrc as #6, grid size
480,480,480, pixel 0.813, shown at level 0.0456, step 1, values float32
opened ChimeraX session
> hide #!5 models
> hide #10 models
> show #11 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> close session
> open
> /Users/hchou01@amgen.com/Downloads/cryosparc_P140_J492_003_volume_map_sharp.mrc
Opened cryosparc_P140_J492_003_volume_map_sharp.mrc as #1, grid size
400,400,400, pixel 0.917, shown at level 0.0753, step 2, values float32
> volume #1 level 0.1169
> close session
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/Chimera_session/20240513_TNFR2-2Fabs_20-22.cxs
> format session
Opened cryosparc_P128_J917_map_sharp_flip.mrc as #3, grid size 256,256,256,
pixel 0.813, shown at level 0.497, step 1, values float32
Opened deepemhancer_cryosparc_P128_J333_005_flip.mrc as #5, grid size
256,256,256, pixel 0.813, shown at level 0.201, step 1, values float32
Opened cryosparc_P128_cryosparc_P128_J594_005_volume_map.mrc as #6, grid size
480,480,480, pixel 0.813, shown at level 0.0456, step 1, values float32
opened ChimeraX session
> open
> /Users/hchou01@amgen.com/Downloads/cryosparc_P140_J500_class_01_final_volume.mrc
Opened cryosparc_P140_J500_class_01_final_volume.mrc as #12, grid size
128,128,128, pixel 2.87, shown at level 0.0231, step 1, values float32
> open
> /Users/hchou01@amgen.com/Downloads/cryosparc_P140_J500_class_00_final_volume.mrc
Opened cryosparc_P140_J500_class_00_final_volume.mrc as #13, grid size
128,128,128, pixel 2.87, shown at level 0.0263, step 1, values float32
> close session
> open
> /Users/hchou01@amgen.com/Downloads/cryosparc_P140_J500_class_01_final_volume.mrc
Opened cryosparc_P140_J500_class_01_final_volume.mrc as #1, grid size
128,128,128, pixel 2.87, shown at level 0.0231, step 1, values float32
> open
> /Users/hchou01@amgen.com/Downloads/cryosparc_P140_J500_class_00_final_volume.mrc
Opened cryosparc_P140_J500_class_00_final_volume.mrc as #2, grid size
128,128,128, pixel 2.87, shown at level 0.0263, step 1, values float32
> tile
2 models tiled
> volume #2 level 0.09663
> volume #1 level 0.08246
> close session
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/Chimera_session/20240513_TNFR2-2Fabs_20-22.cxs
> format session
Opened cryosparc_P128_J917_map_sharp_flip.mrc as #3, grid size 256,256,256,
pixel 0.813, shown at level 0.497, step 1, values float32
Opened deepemhancer_cryosparc_P128_J333_005_flip.mrc as #5, grid size
256,256,256, pixel 0.813, shown at level 0.201, step 1, values float32
Opened cryosparc_P128_cryosparc_P128_J594_005_volume_map.mrc as #6, grid size
480,480,480, pixel 0.813, shown at level 0.0456, step 1, values float32
opened ChimeraX session
> hide #1 models
> hide #!5 models
> show #!5 models
> hide #10 models
> show #10 models
> volume #5 level 0.304
> ui tool show "Show Sequence Viewer"
> sequence chain #4/H #1/H
Alignment identifier is 1
> select #4/H:1-2
16 atoms, 15 bonds, 2 residues, 1 model selected
> select #4/H
928 atoms, 954 bonds, 120 residues, 1 model selected
> select #4/H:1
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #4/H
928 atoms, 954 bonds, 120 residues, 1 model selected
> ui tool show "Show Sequence Viewer"
> sequence chain #7/L #2/L #11/L #10/H
Alignment identifier is 1
> select #7/L:123 #2/L:123 #11/L:123 #10/H:3
52 atoms, 48 bonds, 4 residues, 4 models selected
> select #7/L:123-192 #2/L:123-192 #11/L:123-192 #10/H:3-72
2692 atoms, 2760 bonds, 280 residues, 4 models selected
1 [ID: 1] region 4 chains [3-72] RMSD: 0.378
> select add #10
10947 atoms, 11161 bonds, 1183 residues, 4 models selected
> select subtract #10
2019 atoms, 2070 bonds, 210 residues, 3 models selected
> select #7/L:121 #2/L:121 #11/L:121 #10/H:1
44 atoms, 40 bonds, 4 residues, 4 models selected
> select #7/L:121-139 #2/L:121-139 #11/L:121-139 #10/H:1-19
648 atoms, 648 bonds, 76 residues, 4 models selected
1 [ID: 1] region 4 chains [1-19] RMSD: 0.368
> select add #11
9399 atoms, 9560 bonds, 1030 residues, 4 models selected
> select subtract #11
486 atoms, 486 bonds, 57 residues, 3 models selected
> select add #11
9399 atoms, 9560 bonds, 1030 residues, 4 models selected
> select add #10
18165 atoms, 18489 bonds, 1984 residues, 4 models selected
> select subtract #10
9237 atoms, 9398 bonds, 1011 residues, 3 models selected
> select #7/L:121 #2/L:121 #11/L:121 #10/H:1
44 atoms, 40 bonds, 4 residues, 4 models selected
> select #7/L:121-125 #2/L:121-125 #11/L:121-125 #10/H:1-5
188 atoms, 188 bonds, 20 residues, 4 models selected
1 [ID: 1] region 4 chains [1-5] RMSD: 0.412
> select #7/L:226 #2/L:226 #11/L:226 #10/H:106
20 atoms, 16 bonds, 4 residues, 4 models selected
> select #7/L:226-230 #2/L:226-230 #11/L:226-230 #10/H:106-110
164 atoms, 160 bonds, 20 residues, 4 models selected
1 [ID: 1] region 4 chains [106-110] RMSD: 0.332
> select #7/L:121 #2/L:121 #11/L:121 #10/H:1
44 atoms, 40 bonds, 4 residues, 4 models selected
> select #7/L:121-128 #2/L:121-128 #11/L:121-128 #10/H:1-8
308 atoms, 308 bonds, 32 residues, 4 models selected
1 [ID: 1] region 4 chains [1-8] RMSD: 0.411
> hide #!5 models
> hide #10 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!5 models
> show #10 models
> select #7/L:128 #2/L:128 #11/L:128 #10/H:8
36 atoms, 32 bonds, 4 residues, 4 models selected
> select #7/L:121-128 #2/L:121-128 #11/L:121-128 #10/H:1-8
308 atoms, 308 bonds, 32 residues, 4 models selected
1 [ID: 1] region 4 chains [1-8] RMSD: 0.411
> select #7/L:121 #2/L:121 #11/L:121 #10/H:1
44 atoms, 40 bonds, 4 residues, 4 models selected
> select #7/L:121-127 #2/L:121-127 #11/L:121-127 #10/H:1-7
272 atoms, 272 bonds, 28 residues, 4 models selected
1 [ID: 1] region 4 chains [1-7] RMSD: 0.413
> hide #10 models
> show #10 models
> hide #10 models
> show #10 models
> volume #5 level 0.3871
> volume #5 level 0.1932
> volume #5 level 0.1759
> volume #6 level -0.1251
> volume #6 level -0.02565
> volume #6 level 0.02614
> volume #5 level 0.2555
> close session
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/AmgenFold/anti-TNFR2_Fab69720-1/anti-
> TNFR2_Fab69720-1_ranked_0_C.pdb
Chain information for anti-TNFR2_Fab69720-1_ranked_0_C.pdb #1
---
Chain | Description
B | No description available
C | No description available
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/AmgenFold/anti-TNFR2_Fab69720-1/anti-
> TNFR2_Fab69720-1_ranked_0_V.pdb
Chain information for anti-TNFR2_Fab69720-1_ranked_0_V.pdb #2
---
Chain | Description
B | No description available
C | No description available
> close session
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/AmgenFold/anti-TNFR2_Fab69720-1/anti-
> TNFR2_Fab69722-1_ranked_0_C.pdb
Chain information for anti-TNFR2_Fab69722-1_ranked_0_C.pdb #1
---
Chain | Description
I | No description available
J | No description available
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/AmgenFold/anti-TNFR2_Fab69720-1/anti-
> TNFR2_Fab69722-1_ranked_0_V.pdb
Chain information for anti-TNFR2_Fab69722-1_ranked_0_V.pdb #2
---
Chain | Description
B | No description available
C | No description available
> close session
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/AmgenFold/anti-TNFR2_Fab69720-1/anti-
> TNFR2_Fab69720-1_ranked_0_C.pdb
Chain information for anti-TNFR2_Fab69720-1_ranked_0_C.pdb #1
---
Chain | Description
B | No description available
C | No description available
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/AmgenFold/anti-TNFR2_Fab69720-1/anti-
> TNFR2_Fab69720-1_ranked_0_V.pdb
Chain information for anti-TNFR2_Fab69720-1_ranked_0_V.pdb #2
---
Chain | Description
B | No description available
C | No description available
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/AmgenFold/anti-TNFR2_Fab69720-1/anti-
> TNFR2_Fab69720-1-ranked_4.pdb
Chain information for anti-TNFR2_Fab69720-1-ranked_4.pdb #3
---
Chain | Description
B | No description available
C | No description available
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/AmgenFold/anti-TNFR2_Fab69720-1/anti-
> TNFR2_Fab69720-1-ranked_0.pdb
Chain information for anti-TNFR2_Fab69720-1-ranked_0.pdb #4
---
Chain | Description
B | No description available
C | No description available
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/AmgenFold/anti-TNFR2_Fab69720-1/anti-
> TNFR2_Fab69720-1-ranked_1.pdb
Chain information for anti-TNFR2_Fab69720-1-ranked_1.pdb #5
---
Chain | Description
B | No description available
C | No description available
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/AmgenFold/anti-TNFR2_Fab69720-1/anti-
> TNFR2_Fab69720-1-ranked_2.pdb
Chain information for anti-TNFR2_Fab69720-1-ranked_2.pdb #6
---
Chain | Description
B | No description available
C | No description available
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/AmgenFold/anti-TNFR2_Fab69720-1/anti-
> TNFR2_Fab69720-1-ranked_3.pdb
Chain information for anti-TNFR2_Fab69720-1-ranked_3.pdb #7
---
Chain | Description
B | No description available
C | No description available
> hide #1 models
> hide #2 models
> select add #3
3297 atoms, 3371 bonds, 438 residues, 1 model selected
> select add #4
6594 atoms, 6742 bonds, 876 residues, 2 models selected
> ui mousemode right "translate selected models"
> view matrix models
> #3,1,0,0,-81.823,0,1,0,54.418,0,0,1,0,#4,1,0,0,-81.823,0,1,0,54.418,0,0,1,0
> select subtract #3
3297 atoms, 3371 bonds, 438 residues, 1 model selected
> select add #5
6594 atoms, 6742 bonds, 876 residues, 2 models selected
> close session
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/AmgenFold/anti-TNFR2_Fab69720-1/anti-
> TNFR2_Fab69720-1_ranked_0_C.pdb
Chain information for anti-TNFR2_Fab69720-1_ranked_0_C.pdb #1
---
Chain | Description
B | No description available
C | No description available
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/AmgenFold/anti-TNFR2_Fab69720-1/anti-
> TNFR2_Fab69720-1_ranked_0_V.pdb
Chain information for anti-TNFR2_Fab69720-1_ranked_0_V.pdb #2
---
Chain | Description
B | No description available
C | No description available
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/AmgenFold/anti-TNFR2_Fab69720-1/anti-
> TNFR2_Fab69722-1_ranked_0_C.pdb
Chain information for anti-TNFR2_Fab69722-1_ranked_0_C.pdb #3
---
Chain | Description
I | No description available
J | No description available
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/AmgenFold/anti-TNFR2_Fab69720-1/anti-
> TNFR2_Fab69722-1_ranked_0_V.pdb
Chain information for anti-TNFR2_Fab69722-1_ranked_0_V.pdb #4
---
Chain | Description
B | No description available
C | No description available
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/AmgenFold/anti-TNFR2_Fab69720-1/anti-
> TNFR2_Fab69720-1-ranked_0.pdb
Chain information for anti-TNFR2_Fab69720-1-ranked_0.pdb #5
---
Chain | Description
B | No description available
C | No description available
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/AmgenFold/anti-TNFR2_Fab69720-1/anti-
> TNFR2_Fab69720-1-ranked_1.pdb
Chain information for anti-TNFR2_Fab69720-1-ranked_1.pdb #6
---
Chain | Description
B | No description available
C | No description available
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/AmgenFold/anti-TNFR2_Fab69720-1/anti-
> TNFR2_Fab69720-1-ranked_2.pdb
Chain information for anti-TNFR2_Fab69720-1-ranked_2.pdb #7
---
Chain | Description
B | No description available
C | No description available
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/AmgenFold/anti-TNFR2_Fab69720-1/anti-
> TNFR2_Fab69720-1-ranked_3.pdb
Chain information for anti-TNFR2_Fab69720-1-ranked_3.pdb #8
---
Chain | Description
B | No description available
C | No description available
> open /Users/hchou01@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Documents_Mac/Projects/TNFR2/AmgenFold/anti-TNFR2_Fab69720-1/anti-
> TNFR2_Fab69720-1-ranked_4.pdb
Chain information for anti-TNFR2_Fab69720-1-ranked_4.pdb #9
---
Chain | Description
B | No description available
C | No description available
> select add #1
1557 atoms, 1591 bonds, 209 residues, 1 model selected
> select add #2
3304 atoms, 3376 bonds, 439 residues, 2 models selected
> view matrix models
> #1,1,0,0,-66.772,0,1,0,50.569,0,0,1,0,#2,1,0,0,-66.772,0,1,0,50.569,0,0,1,0
> view matrix models
> #1,1,0,0,-91.453,0,1,0,65.867,0,0,1,0,#2,1,0,0,-91.453,0,1,0,65.867,0,0,1,0
> select subtract #2
1557 atoms, 1591 bonds, 209 residues, 1 model selected
> select subtract #1
Nothing selected
> select add #3
1557 atoms, 1591 bonds, 209 residues, 1 model selected
> select add #4
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 88
OpenGL renderer: Apple M3 Max
OpenGL vendor: Apple
Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac15,9
Model Number: Z1AJ0019DLL/A
Chip: Apple M3 Max
Total Number of Cores: 16 (12 performance and 4 efficiency)
Memory: 64 GB
System Firmware Version: 10151.101.3
OS Loader Version: 10151.81.1
Software:
System Software Overview:
System Version: macOS 14.3.1 (23D60)
Kernel Version: Darwin 23.3.0
Time since boot: 12 days, 3 hours, 19 minutes
Graphics/Displays:
Apple M3 Max:
Chipset Model: Apple M3 Max
Type: GPU
Bus: Built-In
Total Number of Cores: 40
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
P27h-20:
Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
UI Looks like: 2560 x 1440 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.4.1
Babel: 2.14.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2022.12.7
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.13
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.2
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.49.1
ChimeraX-AtomicLibrary: 12.1.5
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.3.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-Clipper: 0.22.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.7.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.8
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6.1
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.14
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.1
ChimeraX-PDB: 2.7.3
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.2
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.12.4
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.33.3
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.1
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 0.29.33
debugpy: 1.8.0
decorator: 5.1.1
docutils: 0.19
executing: 2.0.1
filelock: 3.9.0
fonttools: 4.47.2
funcparserlib: 2.0.0a0
glfw: 2.6.4
grako: 3.16.5
h5py: 3.10.0
html2text: 2020.1.16
idna: 3.6
ihm: 0.38
imagecodecs: 2023.9.18
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.1.1
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.7.1
jupyterlab-widgets: 3.0.9
kiwisolver: 1.4.5
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.4
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.6.0
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.8
numpy: 1.25.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.2.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 4.1.0
prompt-toolkit: 3.0.43
psutil: 5.9.5
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.16.1
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.2801
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2023.3.post1
pyzmq: 25.1.2
qtconsole: 5.4.3
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.5.0
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.18
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4
traitlets: 5.9.0
typing-extensions: 4.9.0
tzdata: 2023.4
urllib3: 2.1.0
wcwidth: 0.2.13
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.9
Change History (2)
comment:1 by , 17 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in garbage collection |
comment:2 by , 17 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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Hi Hui-Ting,
--Eric