Changes between Version 7 and Version 8 of phenix-10-24-24

Timestamp:

Oct 23, 2024, 2:33:28 PM (12 months ago)

Author:

Eric Pettersen

Comment:

--

phenix-10-24-24

@@ -11 +11 @@
 
 = ChimeraX completed =
- * Support HTML in table cells
- * Sequence viewer expand selection to columns
- * If chains have been created, use that info in determining residue principal atom
- * Log a message when computing secondary structure
+ * Added discussion of declaring dependencies on PyPi packages to programming documentation
+ * Made AddH not check for chain formation
+ * Allow H-bond and clash output to be on a per-residue basis
+ * Updating a structure sequence when a residue type changes wasn't accounting for gaps
  * "center" option for `open` command
- * Small revamp of altlocs tool in preparation for "show all altlocs" capability
+ * Altlocs
+   - Small revamp of altlocs tool in preparation for "show all altlocs" capability
+   - Update ribbon if backbone altlocs changed
  * Render by Attribute
+   - Histogram scaling
+   - Save to file button
    - Remember histogram markers on a per-attribute basis
    - Keep markers at same value position (rather than relative position) when expanding histogram range
@@ -23 +27 @@
  * Select by column identity
  * [http://www.cgl.ucsf.edu/home/meng/jclub/kvfinder.html#/ KVFinder] tool/command
- * Also worked on: !AmberTools, atom-spec parser, profile grids, match→align