Phenix

Local EM Fitting

• Support pre-fitted models

Fit Ligand

• Mandatory resolution command arg / tool widget
• Tool's chain ID / res num widgets pass values to command
• Made command fully functional, including checking availability of chain ID + res num
• Interactive search-center adjustment

ChimeraX completed

• Added discussion of declaring dependencies on PyPi packages to programming documentation
• Made AddH not check for updating missing-structure pseudobonds
• Allow H-bond and clash/contact output to be on a per-residue basis
• Updating a structure sequence when a residue type changes wasn't accounting for gaps
• "center" option for open command
• Altlocs
  • Small revamp of altlocs tool in preparation for "show all altlocs" capability
  • Update ribbon if backbone altlocs changed
• Render by Attribute
  • Histogram scaling
  • Save to file button
  • Remember histogram markers on a per-attribute basis
  • Keep markers at same value position (rather than relative position) when expanding histogram range
• Fixed bug making chains where internal residue is non-polymeric
• Select by column identity
• ​KVFinder tool/command