![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Jul 15, 2026: Today
Jul 14, 2026: Yesterday
- 3:44 PM Ticket #20761 (Color blobs mouse mode is choosing transparent colors) closed by
- fixed: Fixed. There was an overflow in the computation of the clicked …
- 3:15 PM ChangeLog edited by
- (diff)
- 3:06 PM Ticket #20761 (Color blobs mouse mode is choosing transparent colors) created by
- […]
- 2:57 PM Ticket #20760 (TypeError: setChecked(self, a0: bool): argument 1 has unexpected type ...) closed by
- fixed: Fixed. Cast from numpy.bool to Python bool in volume viewer gui code.
- 2:50 PM Ticket #20760 (TypeError: setChecked(self, a0: bool): argument 1 has unexpected type ...) created by
- […]
- 2:18 PM Ticket #20759 (OpenGL "invalid framebuffer operation" in glclear after display reconnected) created by
- […]
- 2:02 PM Ticket #20600 (Minimization of RNA fails) closed by
- fixed: Fixed in tomorrow's daily build. Fix: …
- 12:21 PM Ticket #20758 ('zone' command uses dead residue) created by
- […]
- 10:56 AM Ticket #20750 (numpy bool no longer accepted by QCheckBox.setChecked()) closed by
- fixed: Fix: …
- 6:59 AM Ticket #20757 (DLL load failed while importing: An Application Control policy has ...) created by
- […]
Jul 13, 2026:
- 7:07 PM Ticket #20756 (DLL load failed while importing: An Application Control policy has ...) created by
- […]
- 5:49 PM Ticket #20751 (Failed to create D3D11 swapchain) closed by
- nonchimerax: Nvidia graphics driver problem, Windows. I'd try rebooting the …
- 5:42 PM Ticket #20749 (Save image/movie, no opengl context) closed by
- nonchimerax: There are several problems here. First the user tries "movie encode …
- 5:27 PM Ticket #20748 (COD bond-perception bug) closed by
- duplicate: Duplicate of #20746. Likely fixed by recent change.
- 5:22 PM Ticket #20605 (glClear: invalid framebuffer operation drawing scene) closed by
- duplicate: This ChimeraX error is caused by a bug in the Mac Qt window toolkit …
- 5:18 PM Ticket #20755 (The GPU device instance has been suspended) closed by
- duplicate
- 5:15 PM Ticket #20754 (The GPU device instance has been suspended) closed by
- duplicate
- 4:54 PM Dev2026-07-13 edited by
- (diff)
- 3:00 PM Ticket #20753 (The GPU device instance has been suspended) closed by
- duplicate
- 2:57 PM Ticket #20752 (The GPU device instance has been suspended) closed by
- duplicate
- 2:03 PM Ticket #20745 (Trac database down (was: Re: COD bond-perception bug)) closed by
- fixed
- 1:05 PM Ticket #20755 (The GPU device instance has been suspended) created by
- […]
- 1:05 PM Ticket #20754 (The GPU device instance has been suspended) created by
- […]
- 1:05 PM Ticket #20753 (The GPU device instance has been suspended) created by
- […]
- 1:05 PM Ticket #20752 (The GPU device instance has been suspended) created by
- […]
- 1:05 PM Ticket #20751 (Failed to create D3D11 swapchain) created by
- […]
- 1:05 PM Ticket #20750 (numpy bool no longer accepted by QCheckBox.setChecked()) created by
- […]
- 1:05 PM Ticket #20749 (Save image/movie, no opengl context) created by
- […]
- 1:05 PM Ticket #20748 (COD bond-perception bug) created by
- […] [[Image(...)]]
- 1:05 PM Ticket #20747 (Movie: save duplicate images: No such file or directory) created by
- […]
- 1:05 PM Ticket #20746 (Corecif has metal coordination bonds only) created by
-
[…]
Description
Picked up a new pathological case for
corecif: … - 12:09 PM Ticket #20745 (Trac database down (was: Re: COD bond-perception bug)) created by
- […]
Jul 11, 2026:
Jul 10, 2026:
- 6:50 PM Ticket #20607 (OpenFold prediction: "MMseqs2 API is giving errors", empty MSA gets ...) closed by
- fixed: Fixed. Tested the pinned requests 2.32.5 with ChimeraX openfold …
- 5:37 PM Ticket #20607 (OpenFold prediction: "MMseqs2 API is giving errors", empty MSA gets ...) created by
- […]
- 4:33 PM Ticket #20572 (File Save dialog issues command without specifying "format" option) closed by
- fixed: Fix: …
- 2:55 PM 2026-7-9 edited by
- (diff)
- 2:49 PM DeveloperMeetings edited by
- (diff)
- 2:07 PM Ticket #20551 (mmCIF handles non-orthogonal cells incorrectly) closed by
- fixed: So Claude's bug was not a bug. So to_cartesian() has been reverted. …
- 1:57 PM Ticket #20604 (aniso_u6 not copied) closed by
- fixed: Fixed in tomorrow's build. Fix: …
- 1:50 PM Ticket #20606 (Intersection operator (&) does not maintain atom ordering) created by
- […]
- 1:17 PM Ticket #20592 (Delay pyKVFinder install until absolutely necessary) closed by
- fixed: Fixed in tomorrow's daily build. Fix: …
- 12:08 PM Ticket #20605 (glClear: invalid framebuffer operation drawing scene) created by
- […]
- 11:50 AM Ticket #20538 (Problem restoring pseudo bonds in scenes) closed by
- fixed: Fix: …
- 10:13 AM Ticket #20603 (Minimization failure: KeyError: 'N') closed by
- can't reproduce: Works fine with the regular 6LUB entry, so would need file to reproduce.
- 10:07 AM Ticket #20602 (Proofpoint Essentials - Quarantine Digest) closed by
- not a bug
- 9:40 AM Ticket #20604 (aniso_u6 not copied) created by
- […]
- 12:34 AM Ticket #20603 (Minimization failure: KeyError: 'N') created by
- […]
Jul 9, 2026:
- 9:03 PM Ticket #20602 (Proofpoint Essentials - Quarantine Digest) created by
- […]
- 5:31 PM Ticket #20601 (Problem aligning structure and map) closed by
- not a bug: The x-ray map from the Electron Density Server (ChimeraX command "open …
- 1:43 PM Ticket #20595 (Session save: cannot import name 'get_session_info' from ...) closed by
- duplicate: Hi Krish, This is the same problem you reported yesterday, and the …
- 11:08 AM Ticket #20601 (Problem aligning structure and map) created by
- […] PDB and eds.png
- 10:45 AM Ticket #20600 (Minimization of RNA fails) created by
- Minimization of RNA fails, e.g. 9kgg and the file attached to this ticket.
- 5:24 AM Ticket #20599 (Problems installing ISOLDE) created by
- […]
Jul 8, 2026:
- 10:02 PM Ticket #20547 (Sequence viewer holding reference to deleted chain) closed by
- fixed: Hi Mohammad, Thanks for reporting this problem. It is fixed in the …
- 5:24 PM Ticket #20598 (Make mutation score residue coloring use gray for unassociated residues) closed by
- fixed: Done.
- 5:20 PM Ticket #20598 (Make mutation score residue coloring use gray for unassociated residues) created by
- […]
- 5:09 PM Ticket #20596 (Associating structure to mutation scores reports wrong alignment summary) closed by
- fixed: Fixed. It was reporting the number of associated residues with …
- 3:47 PM Ticket #20597 (Opening mutation score .csv file does to show the scores in the order ...) created by
- […]
- 3:44 PM Ticket #20596 (Associating structure to mutation scores reports wrong alignment summary) created by
- […]
- 12:06 PM Ticket #20593 (glClear: invalid framebuffer operation on statusbar expose) closed by
- duplicate: This ChimeraX error is fixed in the current ChimeraX 1.12 release. It …
- 11:58 AM Ticket #20595 (Session save: cannot import name 'get_session_info' from ...) created by
- […]
- 9:51 AM Ticket #20594 (Session save: cannot import name 'get_session_info' from ...) closed by
- fixed: Hi Krish, Thanks for reporting this problem. It was fixed about a …
- 8:43 AM Ticket #20594 (Session save: cannot import name 'get_session_info' from ...) created by
- […]
Jul 7, 2026:
- 8:00 PM Ticket #20576 (Boltz requires older Python versions <= 3.12.) closed by
- fixed: Fixed. I made Boltz install use Astral Python 3.11 instead of the …
- 5:52 PM Ticket #20593 (glClear: invalid framebuffer operation on statusbar expose) created by
- […]
- 2:08 PM 2026-7-9 created by
- 2:07 PM DeveloperMeetings edited by
- (diff)
- 10:43 AM Ticket #20482 (Render by attribute configure: 'MarkedHistogram' object has no ...) closed by
- fixed
- 9:46 AM Ticket #20592 (Delay pyKVFinder install until absolutely necessary) created by
- […]
- 9:16 AM Ticket #20591 (Multiple consecutive Find Cavities: object of type ShortASLWidget has ...) closed by
- can't reproduce
- 9:07 AM Ticket #20548 (Qt 6.11: saving image while floating windows break main window resize) closed by
- fixed: I rolled PyQt back to 6.10.2
- 9:06 AM Ticket #20590 (Main window resize broken with floating windows and PySide 6.11.1) closed by
- fixed
- 8:32 AM Ticket #20591 (Multiple consecutive Find Cavities: object of type ShortASLWidget has ...) created by
- […]
Jul 6, 2026:
- 5:08 PM Ticket #20590 (Main window resize broken with floating windows and PySide 6.11.1) created by
- […]
- 4:40 PM Ticket #16848 (Update from numpy 1 to numpy 2.) closed by
- fixed: Updated daily build to numpy 2.4.6. I tested most the major ChimeraX …
- 4:11 PM Dev2026-07-13 created by
- 4:10 PM DeveloperMeetings edited by
- (diff)
- 4:08 PM Dev2026-07-06 edited by
- (diff)
- 3:08 PM Ticket #20582 (Bug report - ChimeraX ("WARNING: GBM is not supported with the current ...) closed by
- not a bug: This warning is an issue with the precompiled Qt UI toolkit that …
- 1:24 PM Ticket #4751 (Align trajectory frames) closed by
- fixed: The …
- 12:42 PM Ticket #20589 (Crash in QPlatformIntegrationFactory::create) closed by
- can't reproduce: No idea what caused this crash at startup. The same ChimeraX started …
- 12:37 PM Ticket #20587 (glClear: invalid framebuffer operation on statusbar expose) closed by
- duplicate: This ChimeraX error was caused by a bug in the Qt window toolkit. The …
- 11:35 AM Ticket #20588 (ffmpeg: Permission denied) closed by
- duplicate: Hi Jagriti, Thanks for reporting this problem. It has been fixed in …
- 11:12 AM Ticket #20586 (Proofpoint Essentials - Quarantine Digest) closed by
- not a bug
- 11:11 AM Ticket #20585 (Proofpoint Essentials - Quarantine Digest) closed by
- not a bug
- 11:11 AM Ticket #20584 (Proofpoint Essentials - Quarantine Digest) closed by
- not a bug
- 11:10 AM Ticket #20583 (Proofpoint Essentials - Quarantine Digest) closed by
- not a bug
- 11:07 AM Ticket #20579 (Proofpoint Essentials - Quarantine Digest) closed by
- not a bug
- 11:03 AM Ticket #20577 (Proofpoint Essentials - Quarantine Digest) closed by
- not a bug
- 5:06 AM Ticket #20589 (Crash in QPlatformIntegrationFactory::create) created by
- […]
Jul 5, 2026:
Jul 4, 2026:
- 11:40 PM Ticket #20587 (glClear: invalid framebuffer operation on statusbar expose) created by
- […]
- 1:03 AM Ticket #20586 (Proofpoint Essentials - Quarantine Digest) created by
- […]
Jul 3, 2026:
- 5:02 PM Ticket #20585 (Proofpoint Essentials - Quarantine Digest) created by
- […]
- 1:02 PM Ticket #20584 (Proofpoint Essentials - Quarantine Digest) created by
- […]
- 9:02 AM Ticket #20583 (Proofpoint Essentials - Quarantine Digest) created by
- […]
- 1:07 AM Ticket #20582 (Bug report - ChimeraX ("WARNING: GBM is not supported with the current ...) created by
- […]
Jul 2, 2026:
- 7:38 PM Ticket #20573 (Boltz fails with numpy 2.4 due to numba requiring numpy version <= 2.1) closed by
- fixed: Fixed. Made Boltz prediction issue an error if the ChimeraX that …
- 6:22 PM Ticket #20581 (Interfaces toolbar icon error when atoms are selected) closed by
- fixed: Fixed. There is an "interfaces select" subcommand and that caused the …
- 5:43 PM Ticket #20581 (Interfaces toolbar icon error when atoms are selected) created by
- […]
- 5:23 PM Ticket #20580 (Shader error raycasting with softlighting, volume, and molecule shown) created by
- […]
- 5:02 PM Ticket #20579 (Proofpoint Essentials - Quarantine Digest) created by
- […]
- 2:51 PM Ticket #20578 (isolde sim start: OpenMMException: Error compiling kernel) created by
- […]
- 1:02 PM Ticket #20577 (Proofpoint Essentials - Quarantine Digest) created by
- […]
- 11:25 AM Ticket #20557 (Find Cavities crash in constitutional) closed by
- fixed: The pyKVFinder authors have fixed this problem on their end, and I …
- 10:50 AM Ticket #20576 (Boltz requires older Python versions <= 3.12.) created by
- We plan to update ChimeraX to Python 3.14 after the update to numpy 2. …
- 4:12 AM Ticket #20575 (Unknown problem) created by
- […]
Jul 1, 2026:
- 10:13 PM Ticket #20574 (SEQCROW error reading NBO coefficients file: list index out of range) created by
- […]
- 3:48 PM Ticket #20573 (Boltz fails with numpy 2.4 due to numba requiring numpy version <= 2.1) created by
- […]
- 12:52 PM Ticket #20564 (Several volume file readers use numpy fromstring() which does not work ...) closed by
- fixed: Fixed. I fixed numpy fromstring(), tostring(), int16 overflow, old …
- 12:50 PM Ticket #20572 (File Save dialog issues command without specifying "format" option) created by
- […]
- 12:24 PM Ticket #20571 (Error reading Imaris .ims volume file with numpy 2) closed by
- fixed: Fixed. Replaced numpy tostring() with tobytes().
- 12:18 PM Ticket #20571 (Error reading Imaris .ims volume file with numpy 2) created by
- […]
- 12:07 PM Ticket #20570 (Error reading netcdf with numpy2: AttributeError: 'MaskedArray' object ...) closed by
- fixed: Fixed. Replaced tostring() with tobytes().
- 11:58 AM Ticket #20566 (Netcdf file reading error with numpy 2: ValueError: numpy.dtype size ...) closed by
- fixed: Fixed. Updating netcdf4 PyPi package from version 1.6.5 to 1.7.4 …
- 11:56 AM Ticket #20570 (Error reading netcdf with numpy2: AttributeError: 'MaskedArray' object ...) created by
- […]
- 11:51 AM Ticket #20568 (PyTables deprecation warning for dtype() align argument in numpy 2) closed by
- fixed: Fixed. Updated pytables from version 3.10.2 to 3.11.1 to fix numpy 2 …
- 11:43 AM Ticket #20565 (DCD file reader probably broken with numpy 2) closed by
- fixed
- 11:33 AM Ticket #20567 (Numeric overflow warning opening DSN6 .omap file with numpy 2) closed by
- fixed: Fixed. DSN6 uses int16 grid sizes and trying to compute the total …
- 11:19 AM Ticket #20569 (Trouble with ChimeraX 1.8) closed by
- can't reproduce: I suggest you try ChimeraX 1.12 available from SBGrid. It uses a …
- 6:57 AM Ticket #20569 (Trouble with ChimeraX 1.8) created by
- […] [[Image(...)]]
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