hbonds: AttributeError: 'list' object has no attribute 'element_numbers'

[Tom Goddard]

open 1BGQ 1BYQ 1YET 2BRC 2BRE 2CGF 2FWY 2FWZ 2H55 2IOP 2IOR 2IWS 2IWU 2IWX 2JJC 2VW5 2VWC 2XAB 2XDK 2XDL 2XDS 2XDU 2XDX 2XHR 2XHT 2XHX 2XJG 2XJJ 2XJX 2XK2 2XX2 2XX4 2XX5 3D0B 3FT5 3FT8 3K60 3MNR 3O0I 3O2F 3T0Z 3T10 3T1K 3T2S 4AS9 4ASA 4ASB 4ASF 4ASG 4B7P 4BQG 4BQJ 4CE1 4CE2 4CE3 4CGQ 4CGU 4CGV 4CGW 4EGK 4HY6 4LWE 4LWF 4LWG 4LWH 4LWI 4U93 4W7T 5CF0 5GGZ

hbonds ligand intermodel false

Traceback (most recent call last):

File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/cmd_line/tool.py", line 188, in execute

cmd.run(cmd_text)

File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py", line 2546, in run

result = ci.function(session, kw_args)

File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/hbonds/cmd.py", line 83, in cmd_hbonds

result = hb_func(session, struct_info, dist_slop=dist_slop, angle_slop=angle_slop, base_kw)

File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/hbonds/hbond.py", line 480, in find_hbonds

limited_acceptors, generic_acc_info)

File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/hbonds/hbond.py", line 779, in _find_acceptors

acc_func, args = acc_info[numpy.count_nonzero(atom.neighbors.element_numbers > 1)]

AttributeError: 'list' object has no attribute 'element_numbers'