id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 8879 Unknown crash chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-13.3.1-arm64-arm-64bit ChimeraX Version: 1.6rc202304182023 (2023-04-18 20:23:09 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. {""app_name"":""ChimeraX"",""timestamp"":""2023-04-19 19:49:55.00 -0500"",""app_version"":"""",""slice_uuid"":""a5992708-d5b4-36ec-ac0a-e525f6105b56"",""build_version"":"""",""platform"":1,""share_with_app_devs"":0,""is_first_party"":1,""bug_type"":""309"",""os_version"":""macOS 13.3.1 (22E261)"",""roots_installed"":0,""incident_id"":""5F25477C-9DD2-4533-B1A6-62424E34D919"",""name"":""ChimeraX""} { ""uptime"" : 180000, ""procRole"" : ""Unspecified"", ""version"" : 2, ""userID"" : 501, ""deployVersion"" : 210, ""modelCode"" : ""MacBookPro17,1"", ""coalitionID"" : 45150, ""osVersion"" : { ""train"" : ""macOS 13.3.1"", ""build"" : ""22E261"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2023-04-19 19:49:52.6725 -0500"", ""incident"" : ""5F25477C-9DD2-4533-B1A6-62424E34D919"", ""pid"" : 63274, ""translated"" : false, ""cpuType"" : ""ARM-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2023-04-19 15:21:48.6419 -0500"", ""procStartAbsTime"" : 4445772353533, ""procExitAbsTime"" : 4546708706151, ""procName"" : ""ChimeraX"", ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""A7DA96D0-BD27-482D-9627-1ED5F1BAD3D7"", ""responsiblePid"" : 63213, ""codeSigningID"" : """", ""codeSigningTeamID"" : """", ""codeSigningFlags"" : 570491649, ""codeSigningValidationCategory"" : 0, ""codeSigningTrustLevel"" : 0, ""wakeTime"" : 49, ""sleepWakeUUID"" : ""70C4662D-9CEC-4725-BC27-5C012F1F4E88"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0x1010082b4 is in 0x100e3c000-0x1010ac000; bytes after start: 1884852 bytes before end: 671051\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n mapped file 100e34000-100e3c000 [ 32K] r--\/rwx SM=COW ...t_id=efbad34b\n---> mapped file 100e3c000-1010ac000 [ 2496K] r-x\/rwx SM=COW ...t_id=ee49a64b\n mapped file 1010ac000-1010b4000 [ 32K] r--\/rwx SM=COW ...t_id=ee63654b"", ""exception"" : {""codes"":""0x000000000000000a, 0x00000001010082b4"",""rawCodes"":[10,4311777972],""type"":""EXC_BAD_ACCESS"",""signal"":""SIGILL"",""subtype"":""KERN_MEMORY_ERROR at 0x00000001010082b4""}, ""termination"" : {""flags"":0,""code"":4,""namespace"":""SIGNAL"",""indicator"":""Illegal instruction: 4"",""byProc"":""ChimeraX"",""byPid"":63274}, ""ktriageinfo"" : ""VM - (arg = 0x0) Object has no pager\nVM - (arg = 0x0) Object has no pager\nVM - (arg = 0x0) Object has no pager\nVM - (arg = 0x0) Object has no pager\nVM - (arg = 0x0) Object has no pager\n"", ""vmregioninfo"" : ""0x1010082b4 is in 0x100e3c000-0x1010ac000; bytes after start: 1884852 bytes before end: 671051\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n mapped file 100e34000-100e3c000 [ 32K] r--\/rwx SM=COW ...t_id=efbad34b\n---> mapped file 100e3c000-1010ac000 [ 2496K] r-x\/rwx SM=COW ...t_id=ee49a64b\n mapped file 1010ac000-1010b4000 [ 32K] r--\/rwx SM=COW ...t_id=ee63654b"", ""extMods"" : {""caller"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""system"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""targeted"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""warnings"":0}, ""faultingThread"" : 0, ""threads"" : [{""triggered"":true,""id"":2627900,""threadState"":{""x"":[{""value"":10},{""value"":4605346480},{""value"":4605346584},{""value"":4605346480},{""value"":4605346584},{""value"":16343379205905668409},{""value"":101},{""value"":4872134712},{""value"":4311777972},{""value"":8215724304},{""value"":0},{""value"":2},{""value"":2},{""value"":0},{""value"":4294967296},{""value"":4600621560},{""value"":3},{""value"":4311830748},{""value"":0},{""value"":16343379205905668409},{""value"":4605346584},{""value"":8215760896},{""value"":2},{""value"":4871701952},{""value"":4600612848},{""value"":18446744073709551615},{""value"":4872134712},{""value"":4872136576},{""value"":202}],""flavor"":""ARM_THREAD_STATE64"",""lr"":{""value"":6684551812},""cpsr"":{""value"":4096},""fp"":{""value"":4605346464},""sp"":{""value"":4605346432},""esr"":{""value"":2181038087,""description"":""(Instruction Abort) Translation fault""},""pc"":{""value"":4311777972,""matchesCrashFrame"":1},""far"":{""value"":4311777972}},""frames"":[{""imageOffset"":4311777972,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0},{""imageOffset"":6684551812,""imageIndex"":0}]},{""id"":2627931,""frames"":[{""imageOffset"":6684112656,""imageIndex"":0},{""imageOffset"":4346780512,""imageIndex"":0},{""imageOffset"":6684360616,""imageIndex"":0},{""imageOffset"":6684339616,""imageIndex"":0}]},{""id"":2627932,""frames"":[{""imageOffset"":6684112656,""imageIndex"":0},{""imageOffset"":4346780512,""imageIndex"":0},{""imageOffset"":6684360616,""imageIndex"":0},{""imageOffset"":6684339616,""imageIndex"":0}]},{""id"":2627933,""frames"":[{""imageOffset"":6684112656,""imageIndex"":0},{""imageOffset"":4346780512,""imageIndex"":0},{""imageOffset"":6684360616,""imageIndex"":0},{""imageOffset"":6684339616,""imageIndex"":0}]},{""id"":2627934,""frames"":[{""imageOffset"":6684112656,""imageIndex"":0},{""imageOffset"":4346780512,""imageIndex"":0},{""imageOffset"":6684360616,""imageIndex"":0},{""imageOffset"":6684339616,""imageIndex"":0}]},{""id"":2627935,""frames"":[{""imageOffset"":6684112656,""imageIndex"":0},{""imageOffset"":4346780512,""imageIndex"":0},{""imageOffset"":6684360616,""imageIndex"":0},{""imageOffset"":6684339616,""imageIndex"":0}]},{""id"":2627936,""frames"":[{""imageOffset"":6684112656,""imageIndex"":0},{""imageOffset"":4346780512,""imageIndex"":0},{""imageOffset"":6684360616,""imageIndex"":0},{""imageOffset"":6684339616,""imageIndex"":0}]},{""id"":2627937,""frames"":[{""imageOffset"":6684112656,""imageIndex"":0},{""imageOffset"":4346780512,""imageIndex"":0},{""imageOffset"":6684360616,""imageIndex"":0},{""imageOffset"":6684339616,""imageIndex"":0}]}], ""usedImages"" : [ { ""size"" : 0, ""source"" : ""A"", ""base"" : 0, ""uuid"" : ""00000000-0000-0000-0000-000000000000"" } ], ""sharedCache"" : { ""base"" : 6680166400, ""size"" : 3539533824, ""uuid"" : ""ebddd61c-5dcf-399c-a88b-759edf197103"" }, ""vmSummary"" : ""ReadOnly portion of Libraries: Total=800.9M resident=0K(0%) swapped_out_or_unallocated=800.9M(100%)\nWritable regions: Total=1.6G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.6G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nKernel Alloc Once 32K 1 \nMALLOC 249.2M 32 \nMALLOC guard page 96K 5 \nMALLOC_MEDIUM (reserved) 720.0M 6 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)\nSTACK GUARD 112K 7 \nStack 11.7M 8 \nStack Guard 56.0M 1 \nVM_ALLOCATE 180.5M 90 \nVM_ALLOCATE (reserved) 96.0M 2 reserved VM address space (unallocated)\n__DATA 11K 1 \n__DATA_CONST 22K 1 \n__DATA_DIRTY 7K 1 \n__LINKEDIT 800.4M 1 \n__TEXT 572K 1 \ndyld private memory 272K 2 \nmapped file 42.8M 196 \nshared memory 32K 2 \n=========== ======= ======= \nTOTAL 2.5G 358 \nTOTAL, minus reserved VM space 1.3G 358 \n"", ""legacyInfo"" : { ""threadTriggered"" : { } }, ""logWritingSignature"" : ""38c93837f47bbdd03ddcc65924526eefc4d75d75"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""62c73fd17cce0d1b0bcb8a02"", ""factorPackIds"" : { }, ""deploymentId"" : 240000061 }, { ""rolloutId"" : ""639124e81d92412bfb4880b3"", ""factorPackIds"" : { }, ""deploymentId"" : 240000004 } ], ""experiments"" : [ { ""treatmentId"" : ""c28e4ee6-1b08-4f90-8e05-2809e78310a3"", ""experimentId"" : ""6317d2003d24842ff850182a"", ""deploymentId"" : 400000013 } ] } } ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet You can double click a model's Name or ID in the model panel to edit those fields UCSF ChimeraX version: 1.6rc202304182023 (2023-04-18) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > ui tool show AlphaFold > alphafold predict > >HMOPCNDC_00979hydroxymycolatesynthaseMmaA4[MycobacteriumtuberculosisH37Rv]MAEKPISPTKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAIEVTSEEVYNRYMKYLRGCEHYFTDEMLDCSLVTYLKPGAAA Missing or invalid ""sequences"" argument: Sequences argument "">HMOPCNDC_00979hydroxymycolatesynthaseMmaA4[MycobacteriumtuberculosisH37Rv]MAEKPISPTKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAIEVTSEEVYNRYMKYLRGCEHYFTDEMLDCSLVTYLKPGAAA"" is not a chain specifier, alignment id, UniProt id, or sequence characters > alphafold predict > MAEKPISPTKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAIEVTSEEVYNRYMKYLRGCEHYFTDEMLDCSLVTYLKPGAAA Please cite ColabFold: Making protein folding accessible to all. Nature Methods (2022) if you use these predictions. Running AlphaFold prediction AlphaFold prediction finished Results in /Users/karlbriegel/Downloads/ChimeraX/AlphaFold/prediction_1 > open > /Users/karlbriegel/Downloads/ChimeraX/AlphaFold/prediction_1/best_model.pdb Chain information for best_model.pdb #1 --- Chain | Description A | No description available > movie record > turn y 2 180 > wait 180 > movie encode /Users/karlbriegel/Desktop/movie1.mp4 Movie saved to /Users/karlbriegel/Desktop/movie1.mp4 > style sphere Changed 2410 atom styles > select add #1 2410 atoms, 2469 bonds, 298 residues, 1 model selected > mlp sel Map values for surface ""best_model.pdb_A SES surface"": minimum -30.43, mean -4.826, maximum 24.16 To also show corresponding color key, enter the above mlp command and add key true > color sel bychain > color sel byhetero > rainbow sel > color sel bychain > mlp sel Map values for surface ""best_model.pdb_A SES surface"": minimum -30.43, mean -4.826, maximum 24.16 To also show corresponding color key, enter the above mlp command and add key true > color sel bypolymer > rainbow sel > alphafold match > MAEKPISPTKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAIEVTSEEVYNRYMKYLRGCEHYFTDEMLDCSLVTYLKPGAAA Fetching AlphaFold database settings from https://www.rbvi.ucsf.edu/chimerax/data/status/alphafold_database3.json Fetching compressed AlphaFold R4M388 from https://alphafold.ebi.ac.uk/files/AF-R4M388-F1-model_v4.cif 1 AlphaFold model found using sequence similarity searches: R4M388 (1 sequences) Sequence Similarity --- AlphaFold Model| Query Sequence| Identity %| Coverage % R4M388_MYCTX | MAEKP...PGAAA | 100.0 | 100.0 Opened 1 AlphaFold model > hide #!1 models > select subtract #1 1 model selected > ui tool show ""Blast Protein"" > blastprotein > MAEKPISPTKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAIEVTSEEVYNRYMKYLRGCEHYFTDEMLDCSLVTYLKPGAAA > database pdb cutoff 1e-3 matrix BLOSUM62 maxSeqs 100 version None name bp1 Webservices job id: 42PSYWCB1Z81MXBM > open pdb:2FK7 | Summary of feedback from opening 2FK7 fetched from pdb --- note | Fetching compressed mmCIF 2fk7 from http://files.rcsb.org/download/2fk7.cif 2fk7 title: Crystal structure of Hma (MmaA4) from Mycobacterium tuberculosis, apo-form [more info...] Chain information for 2fk7 #3 --- Chain | Description A | methoxy mycolic acid synthase 4 > select clear > hide #2 models ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.6rc202304182023 (2023-04-18) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 83.1 OpenGL renderer: Apple M1 OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro17,1 Model Number: MYD82LL/A Chip: Apple M1 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 8 GB System Firmware Version: 8422.100.650 OS Loader Version: 8422.100.650 Software: System Software Overview: System Version: macOS 13.3.1 (22E261) Kernel Version: Darwin 22.4.0 Time since boot: 11 days, 17 hours, 32 minutes Graphics/Displays: Apple M1: Chipset Model: Apple M1 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9 ChimeraX-AddH: 2.2.4 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6rc202304182023 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.2 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 6.5.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.2.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Core can't reproduce Tom Goddard all ChimeraX