id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 8808 Crash forking ffmpeg chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC) Description Last time you used ChimeraX it crashed. 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""uuid"" : ""bc574849-1aae-31e7-b350-916dda999d97"", ""path"" : ""\/usr\/lib\/system\/libsystem_pthread.dylib"", ""name"" : ""libsystem_pthread.dylib"" } ], ""sharedCache"" : { ""base"" : 140703365857280, ""size"" : 15220686848, ""uuid"" : ""53b6853f-0bc3-33f5-be72-1aca3a188ff8"" }, ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.5G resident=0K(0%) swapped_out_or_unallocated=1.5G(100%)\nWritable regions: Total=5.3G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=5.3G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 512K 4 \nActivity Tracing 256K 1 \nCG backing stores 6016K 8 \nCG image 728K 81 \nColorSync 240K 28 \nCoreAnimation 5232K 113 \nCoreGraphics 28K 6 \nCoreUI image data 3544K 35 \nFoundation 16K 1 \nKernel Alloc Once 8K 1 \nMALLOC 3.6G 370 \nMALLOC guard page 192K 8 \nMALLOC_MEDIUM (reserved) 376.0M 5 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)\nMach message 16K 4 \nOpenGL GLSL 384K 4 \nRosetta Arena 6144K 3 \nRosetta Generic 1496K 371 \nRosetta IndirectBranch 2048K 1 \nRosetta JIT 128.0M 1 \nRosetta Return Stack 760K 76 \nRosetta Thread Context 760K 76 \nSTACK GUARD 52K 13 \nStack 159.1M 32 \nStack Guard 56.1M 19 \nVM_ALLOCATE 229.0M 256 \nVM_ALLOCATE (reserved) 160.1M 14 reserved VM address space (unallocated)\n__CTF 756 1 \n__DATA 44.6M 686 \n__DATA_CONST 30.9M 339 \n__DATA_DIRTY 1644K 214 \n__FONT_DATA 4K 1 \n__GLSLBUILTINS 5176K 1 \n__LINKEDIT 739.9M 159 \n__OBJC_RO 82.7M 1 \n__OBJC_RW 3200K 2 \n__TEXT 805.0M 681 \n__UNICODE 592K 1 \ndyld private memory 1184K 3 \nmapped file 5.3G 1188 \nshared memory 3040K 27 \nunshared pmap 11.2M 9 \n=========== ======= ======= \nTOTAL 12.1G 4845 \nTOTAL, minus reserved VM space 11.2G 4845 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""60da5e84ab0ca017dace9abf"", ""factorPackIds"" : { }, ""deploymentId"" : 240000008 }, { ""rolloutId"" : ""607844aa04477260f58a8077"", ""factorPackIds"" : { ""SIRI_MORPHUN_ASSETS"" : ""6103050cbfe6dc472e1c982a"" }, ""deploymentId"" : 240000066 } ], ""experiments"" : [ { ""treatmentId"" : ""c28e4ee6-1b08-4f90-8e05-2809e78310a3"", ""experimentId"" : ""6317d2003d24842ff850182a"", ""deploymentId"" : 400000012 } ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/adamcampos/Downloads/D_9101002114_val-data_P1.cif format mmcif No such file/path: /Users/adamcampos/Downloads/D_9101002114_val-data_P1.cif > open /Users/adamcampos/Documents/Utah-Postdoc/AMOT/Isoforms/Cryo- > EM_Isoforms/AMOTp80-Cryo-02-17-23/Cryosparc-finalEM- > Maps/J4642-FitMap/J4642-ALL.mrc format mrc Opened J4642-ALL.mrc as #1, grid size 256,256,256, pixel 3.16, shown at level 0.636, step 1, values float32 > set bgColor white > surface dust #1 size 31.6 > volume #1 level 0.4952 > volume #1 level 0.4529 > volume #1 level 0.4106 > volume #1 color #d783ff > volume #1 color #ff85ff > volume #1 color #9437ff > volume #1 color #d783ff > lighting simple > lighting soft > lighting shadows true intensity 0.5 > lighting shadows false > lighting shadows true > lighting shadows false > lighting shadows true > graphics silhouettes true > toolshed show > ui tool show ""Scale Bar"" > scalebar > scalebar 350 > scalebar 200 > scalebar 100 > open /Users/adamcampos/Downloads/emd_0192.map Opened emd_0192.map as #3, grid size 356,356,356, pixel 1.52, shown at level 0.111, step 2, values float32 > surface dust #1 size 31.6 > surface dust #3 size 15.2 > surface dust #1 size 31.6 > surface dust #3 size 15.2 > surface dust #1 size 31.6 > surface dust #3 size 15.2 > surface dust #1 size 31.6 > surface dust #3 size 15.2 > surface dust #1 size 31.6 > surface dust #3 size 15.2 > surface dust #1 size 31.6 > surface dust #3 size 15.2 > select #3 2 models selected > ui mousemode right translate > ui mousemode right select > ui mousemode right translate > ui mousemode right ""translate selected models"" > view matrix models #3,1,0,0,70.319,0,1,0,6.9524,0,0,1,89.438 > view matrix models #3,1,0,0,128.55,0,1,0,93.986,0,0,1,88.606 > ui mousemode right ""rotate selected models"" > view matrix models > #3,0.46507,-0.8852,0.01171,508.28,0.88487,0.46522,0.024163,20.356,-0.026836,-0.00087551,0.99964,95.581 > view matrix models > #3,-0.31448,-0.927,0.20437,660.13,0.47574,-0.34021,-0.81113,577.37,0.82145,-0.15785,0.548,53.689 > view matrix models > #3,-0.2361,-0.80666,-0.54181,810.15,-0.019794,0.56145,-0.82728,448.71,0.97153,-0.18459,-0.14852,214.13 > view matrix models > #3,-0.0701,-0.67994,-0.72991,784.54,0.44504,0.63353,-0.63291,260.47,0.89276,-0.36921,0.25819,174.98 > view matrix models > #3,-0.42149,-0.86459,0.27357,650.01,-0.058479,-0.27513,-0.95963,731.38,0.90495,-0.42047,0.065404,239.07 > view matrix models > #3,-0.6846,-0.72262,0.095609,723.3,-0.62978,0.52034,-0.57674,542.7,0.36701,-0.45505,-0.81131,620.8 > view matrix models > #3,-0.81286,-0.1061,-0.57272,762.55,0.31658,0.74488,-0.58731,248.23,0.48892,-0.65871,-0.57189,583.1 > view matrix models > #3,-0.69536,-0.098586,-0.71186,769.34,0.62511,0.40573,-0.6668,289.79,0.35456,-0.90866,-0.2205,591.29 > view matrix models > #3,-0.94343,-0.23544,-0.23347,738.94,0.22516,0.061979,-0.97235,569.28,0.2434,-0.96991,-0.0054614,577.46 > view matrix models > #3,-0.15422,0.21659,-0.96401,615.14,0.77095,0.63659,0.019691,1.1579,0.61794,-0.74017,-0.26515,490.67 > view matrix models > #3,0.62136,0.66965,-0.40679,143.28,0.28725,0.28835,0.91342,-24.412,0.72897,-0.68442,-0.013188,378.74 > view matrix models > #3,0.40832,0.45705,0.79017,-70.266,-0.75892,-0.31105,0.57209,496.88,0.50726,-0.83328,0.21986,412.13 > view matrix models > #3,0.5408,0.38483,0.74796,-71.014,-0.29026,-0.74921,0.59535,498.93,0.78948,-0.53907,-0.29347,399.04 > view matrix models > #3,0.4008,0.9135,-0.069868,36.791,0.34109,-0.078003,0.93679,59.714,0.85031,-0.3993,-0.34285,357.89 > view matrix models > #3,-0.31374,0.62505,-0.71476,470.85,0.70317,0.6588,0.26746,-55.956,0.63806,-0.41868,-0.64621,498.52 > view matrix models > #3,-0.83304,0.053083,-0.55067,716.42,0.41679,0.71476,-0.56161,225,0.36378,-0.69735,-0.61755,637.41 > view matrix models > #3,-0.70625,0.070121,-0.70448,722.22,0.64462,0.47511,-0.59895,246.81,0.2927,-0.87713,-0.38075,641.33 > view matrix models > #3,-0.58705,0.23066,-0.77599,666.8,0.65852,0.6936,-0.29201,97.771,0.47088,-0.68243,-0.55908,590.78 > view matrix models > #3,-0.63294,0.16491,-0.75644,691.42,0.66468,0.61674,-0.42171,153.39,0.39698,-0.7697,-0.49997,617.64 > view matrix models > #3,-0.54654,0.25646,-0.79719,655.26,0.69659,0.6676,-0.2628,87.768,0.46481,-0.69895,-0.54352,592.72 > view matrix models > #3,-0.71281,0.10341,-0.69369,711.47,0.56282,0.67451,-0.47778,177.48,0.41849,-0.73099,-0.539,612.01 > ui mousemode right ""translate selected models"" > view matrix models > #3,-0.71281,0.10341,-0.69369,749.82,0.56282,0.67451,-0.47778,170.5,0.41849,-0.73099,-0.539,603.04 > select clear > open /Users/adamcampos/Downloads/emd_14467.map Opened emd_14467.map as #4, grid size 300,300,300, pixel 0.912, shown at level 0.0343, step 2, values float32 > surface dust #1 size 31.6 > surface dust #4 size 9.12 > ui mousemode right ""translate selected models"" > ui mousemode right select > select #4 2 models selected > ui mousemode right ""translate selected models"" > view matrix models #4,1,0,0,191.76,0,1,0,-79.045,0,0,1,169.04 > view matrix models #4,1,0,0,400.31,0,1,0,33.411,0,0,1,220.39 > view matrix models #4,1,0,0,411.07,0,1,0,38.649,0,0,1,217.46 > view matrix models #4,1,0,0,258.91,0,1,0,69.36,0,0,1,181.98 > view matrix models #4,1,0,0,299.48,0,1,0,242.21,0,0,1,182.16 > ui mousemode right ""rotate selected models"" > view matrix models > #4,0.93714,-0.34099,-0.074103,364.81,0.32716,0.93245,-0.15332,228.02,0.12138,0.11944,0.98539,151.33 > view matrix models > #4,0.94624,0.3137,-0.078927,274.65,-0.3208,0.87874,-0.35341,350.73,-0.041505,0.35973,0.93213,147.85 > view matrix models > #4,0.38648,0.92206,-0.020856,259.46,-0.9214,0.385,-0.052787,458.7,-0.040643,0.039617,0.99839,182.48 > view matrix models > #4,0.62668,0.77861,0.032198,239.21,-0.77877,0.62424,0.061942,390.9,0.028129,-0.063893,0.99756,187.42 > view matrix models > #4,0.78627,0.61564,-0.052525,251.44,-0.61045,0.78715,0.087992,342.19,0.095517,-0.037121,0.99474,174.99 > view matrix models > #4,0.60085,0.79929,0.010721,242.83,-0.79722,0.60016,-0.065191,414.1,-0.058541,0.030623,0.99782,186.21 > view matrix models > #4,0.16052,0.98448,0.070925,269.03,-0.95945,0.1725,-0.22296,516.24,-0.23173,-0.032261,0.97224,221.83 > view matrix models > #4,-0.17971,0.98189,0.060025,317.08,-0.97861,-0.17223,-0.11249,550.9,-0.10012,-0.078957,0.99184,207.67 > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" > view matrix models > #4,-0.6319,0.76734,-0.10908,430.98,-0.55047,-0.5434,-0.63379,614.9,-0.54561,-0.34045,0.76577,334.88 > view matrix models > #4,-0.91883,0.24158,-0.31208,569.66,-0.22648,-0.97036,-0.084331,554.14,-0.3232,-0.0068061,0.94631,234.32 > view matrix models > #4,-0.89546,0.31984,-0.30962,555.44,-0.31596,-0.94661,-0.064053,560.26,-0.31357,0.04047,0.9487,226.22 > select clear > volume #4 step 1 > volume #3 step 1 > open /Users/adamcampos/Downloads/emd_24494.map Opened emd_24494.map as #5, grid size 432,432,432, pixel 1.06, shown at level 0.0365, step 2, values float32 > surface dust #1 size 31.6 > surface dust #5 size 10.6 > volume #5 step 1 > ui mousemode right select > select #5 2 models selected > ui mousemode right ""translate selected models"" > view matrix models #5,1,0,0,160.93,0,1,0,0.41747,0,0,1,160.36 > view matrix models #5,1,0,0,168.58,0,1,0,160.22,0,0,1,135.32 > view matrix models #5,1,0,0,180.38,0,1,0,172.54,0,0,1,137.01 > view matrix models #5,1,0,0,187.83,0,1,0,170.92,0,0,1,125.59 > select clear > select add #1 2 models selected > select add #5 4 models selected > select add #4 6 models selected > select add #3 8 models selected > ui mousemode right select > select clear Drag select of 1 J4642-ALL.mrc , 3 emd_0192.map , 5 emd_24494.map > select clear > ui mousemode right select > select #1 2 models selected > ui mousemode right ""translate selected models"" > select clear > select add #1 2 models selected > view matrix models #1,1,0,0,19.547,0,1,0,127.12,0,0,1,5.4081 > select clear > scalebar off > movie record > turn y 2 180 > wait 180 > movie encode /Users/adamcampos/Desktop/movie1.mp4 Movie saved to /Users/adamcampos/Desktop/movie1.mp4 > movie record > turn y 2 180 > wait 180 > movie encode /Users/adamcampos/Desktop/movie2.mp4 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 76.3 OpenGL renderer: Apple M1 OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: MacBookAir10,1 Processor Name: Unknown Processor Speed: 2.4 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache: 8 MB Memory: 16 GB Software: System Software Overview: System Version: macOS 12.4 (21F79) Kernel Version: Darwin 21.5.0 Time since boot: 66 days 2:26 Graphics/Displays: Apple M1: Chipset Model: Apple M1 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Family: Supported, Metal GPUFamily Apple 7 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal SAMSUNG: Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus) UI Looks like: 2560 x 1440 @ 30.00Hz Mirror: Off Online: Yes Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.1.0 Babel: 2.11.0 backcall: 0.2.0 blockdiag: 3.0.0 build: 0.8.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 2.1.1 ChimeraX-AddCharge: 1.4 ChimeraX-AddH: 2.2.1 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.6 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.41.5 ChimeraX-AtomicLibrary: 8.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.7.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.1 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-Clipper: 0.19.0 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.2 ChimeraX-CommandLine: 1.2.4 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.5 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.3 ChimeraX-DockPrep: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ISOLDE: 1.5 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.1 ChimeraX-MatchMaker: 2.0.9 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.8 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.6 ChimeraX-ModelPanel: 1.3.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.1 ChimeraX-MouseModes: 1.1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.9.1 ChimeraX-PDB: 2.6.8 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.7.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.1.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.24.3 ChimeraX-uniprot: 2.2.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.1.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.1 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0.1 colorama: 0.4.5 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.32 debugpy: 1.6.4 decorator: 5.1.1 docutils: 0.19 entrypoints: 0.4 executing: 1.2.0 filelock: 3.7.1 fonttools: 4.38.0 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.33 imagecodecs: 2022.7.31 imagesize: 1.4.1 importlib-metadata: 5.1.0 ipykernel: 6.15.3 ipython: 8.4.0 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.1.2 jupyter-client: 7.3.4 jupyter-core: 5.1.0 kiwisolver: 1.4.4 line-profiler: 3.5.1 lxml: 4.9.1 lz4: 4.0.2 MarkupSafe: 2.1.1 matplotlib: 3.5.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.0 networkx: 2.8.5 numexpr: 2.8.4 numpy: 1.23.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.2.0 pip: 22.2.2 pkginfo: 1.8.3 platformdirs: 2.5.4 prompt-toolkit: 3.0.33 psutil: 5.9.1 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.12.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2022.6 pyzmq: 24.0.1 qtconsole: 5.3.1 QtPy: 2.3.0 RandomWords: 0.4.0 requests: 2.28.1 scipy: 1.9.0 setuptools: 65.1.1 setuptools-scm: 7.0.5 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 5.1.1 sphinx-autodoc-typehints: 1.19.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tifffile: 2022.7.31 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.3.0 typing-extensions: 4.4.0 urllib3: 1.26.13 wcwidth: 0.2.5 webcolors: 1.12 wheel: 0.37.1 wheel-filename: 1.4.1 zipp: 3.11.0 }}} " defect closed normal Input/Output nonchimerax all ChimeraX