Opened 3 years ago

Last modified 2 years ago

#8285 closed enhancement

Add option to uniprot open command to associate sequence with a specified structure — at Initial Version

Reported by: Tom Goddard Owned by: Eric Pettersen
Priority: moderate Milestone:
Component: Sequence Version:
Keywords: Cc: Elaine Meng
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

I'd like to be able to associate a uniprot sequence opened with the open command with an already open structure. Currently

open 2rh1
open P07550 fromDatabase uniprot

does not associate the uniprot sequence with the structure. The case I encountered this was where the uniprot sequence was opened from the chain table for 2rh1 in the Log. So I was a bit surprised that it did not associated the sequence. One way to handle this would be to add an open command option so the Log table could instead issue

open P07550 fromDatabase uniprot associate #1/A

or for other structures there may be multiple chains to associate

open P07550 fromDatabase uniprot associate #2/A,B,C

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