Opened 3 years ago

Closed 3 years ago

#8058 closed defect (can't reproduce)

Crash using File→Open on Windows and/or in return statement

Reported by: uzay.sezen@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: Input/Output Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description (last modified by Eric Pettersen) 

The following bug report has been submitted:
Platform:        Windows-10-10.0.19045
ChimeraX Version: 1.4.dev202203230115 (2022-03-23 01:15:14 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Thread 0x0000327c (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000ac8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002930 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\liWindows fatal exception: code 0xb8001010e\

muWindows fatal exception: lcode 0xt8001010ei

prWindows fatal exception: code 0xoc8001010e

esWindows fatal exception: code 0xsiWindows fatal exception: n8001010e

g\code 0xcWindows fatal exception: code 0x8001010e

8001010eWindows fatal exception: ocode 0xnn

8001010eWindows fatal exception: ec

code 0xWindows fatal exception: ti8001010e

code 0xWindows fatal exception: on8001010e.

pcode 0x8001010eyWindows fatal exception: code 0x"8001010e, line 



Windows fatal exception: 816Windows fatal exception:  in _ecode 0xx8001010e

hWindows fatal exception: code 0x8001010e

code 0x8001010ea

usWindows fatal exception: tcode 0xive_w8001010ea

it
  File Windows fatal exception: "code 0xC8001010e:

\PWindows fatal exception: rcode 0xo8001010eg

ramWindows fatal exception:  code 0xF8001010ei

les\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\ProgramWindows fatal exception: code 0x F8001010e

ilWindows fatal exception: code 0xes8001010e

\CWindows fatal exception: code 0xh8001010e

imWindows fatal exception: code 0xe8001010er

aWindows fatal exception: code 0xX8001010eWindows fatal exception: code 0x 1

8001010eWindows fatal exception: .4

.code 0xWindows fatal exception: code 0xd8001010e8001010e

eWindows fatal exception: 

v2Windows fatal exception: code 0xcode 0x8001010e028001010e



2Windows fatal exception: 03Windows fatal exception: 2code 0x38001010ecode 0x8001010e0



1Windows fatal exception: Windows fatal exception: 1code 0xcode 0x8001010e8001010e



5Windows fatal exception: \code 0xb8001010ei

nWindows fatal exception: code 0x\l8001010e

ibWindows fatal exception: code 0x\m8001010e

ulWindows fatal exception: code 0xti8001010e

procesWindows fatal exception: code 0xs8001010e

inWindows fatal exception: code 0x8001010eg

\pWindows fatal exception: code 0xo8001010e

olWindows fatal exception: code 0x.8001010e

pyWindows fatal exception: code 0x"8001010e, line 

519Windows fatal exception: code 0x in 8001010e

_Windows fatal exception: code 0xh8001010e

anWindows fatal exception: code 0xd8001010e

leWindows fatal exception: code 0x_8001010e

workers
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\Windows fatal exception: code 0x8001010eth

reWindows fatal exception: code 0xa8001010ed

inWindows fatal exception: code 0x8001010eg.py

"Windows fatal exception: , line code 0x9308001010e in 

_Windows fatal exception: bocode 0xo8001010et

stWindows fatal exception: rap
code 0x
Thread 0x8001010e00004168 (most recent call first):


  File Windows fatal exception: "Ccode 0x:\8001010ePro

gWindows fatal exception: racode 0xm 8001010eFi

lWindows fatal exception: escode 0x8001010e\

ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004120 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\PWindows fatal exception: code 0xr8001010eo

graWindows fatal exception: mcode 0x 8001010eF

ilWindows fatal exception: ecode 0xs8001010e\

ChWindows fatal exception: icode 0xm8001010ee

raWindows fatal exception: Xcode 0x 8001010e1

.4Windows fatal exception: .code 0xd8001010ee

v2Windows fatal exception: 0code 0x28001010e2

03Windows fatal exception: 2code 0x38001010e0

11Windows fatal exception: 5code 0x\8001010eb

in\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\Windows fatal exception: code 0xChim8001010e

erWindows fatal exception: code 0xaX8001010e

 1Windows fatal exception: code 0x8001010e

.Windows fatal exception: code 0x4.8001010e

dWindows fatal exception: Windows fatal exception: code 0xe8001010ecode 0x

vWindows fatal exception: 8001010ecode 0x28001010e0

22Windows fatal exception: 0code 0x

3Windows fatal exception: 2code 0x8001010e8001010e



Windows fatal exception: code 0xWindows fatal exception: 308001010e1code 0x8001010e

1Windows fatal exception: 

5\code 0x8001010eWindows fatal exception: code 0x8001010e

bi

n\Windows fatal exception: lcode 0xi8001010eb

\tWindows fatal exception: hcode 0xr8001010ee

adWindows fatal exception: icode 0xn8001010eg

.pWindows fatal exception: ycode 0x"8001010e, line 

930 in Windows fatal exception: _code 0xb8001010eo

otstrap

Thread 0x0000412c (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000acc (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in woWindows fatal exception: code 0x8001010er

keWindows fatal exception: code 0xr8001010e


  File Windows fatal exception: code 0x"8001010e

C:Windows fatal exception: code 0x\8001010e

PrWindows fatal exception: code 0x8001010eo

grWindows fatal exception: code 0xa8001010e

mWindows fatal exception: code 0x F8001010e

ileWindows fatal exception: code 0xs8001010e

\ChWindows fatal exception: code 0x8001010ei

[lots of this deleted]

Thread 0x000018ec (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003268 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000041d4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000035d0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000327c (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000ac8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002930 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004168 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004120 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000412c (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000acc (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000404c (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000018ec (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003268 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000041d4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000035d0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000327c (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000ac8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002930 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004168 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004120 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000412c (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000acc (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000404c (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000018ec (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003268 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000041d4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000035d0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000327c (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000ac8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002930 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004168 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004120 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000412c (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000acc (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000404c (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000018ec (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003268 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000041d4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000035d0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.4.dev202203230115\bin\lib\runpy.py", line 197 in _run_module_as_main
===== Log before crash start =====
UCSF ChimeraX version: 1.4.dev202203230115 (2022-03-23)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\TFIIFb-SwissM-AFold-dimer.cxs
> format session

opened ChimeraX session  

> select add #3

2290 atoms, 2329 bonds, 288 residues, 1 model selected  

> color sel gray

> select add #4

4580 atoms, 4658 bonds, 576 residues, 2 models selected  

> select subtract #3

2290 atoms, 2329 bonds, 288 residues, 1 model selected  

> color sel gray

> select subtract #4

Nothing selected  

> show #3 target m

> view #3 clip false

> ui tool show "Model Loops"

> show #3 target m

> select add #3

2290 atoms, 2329 bonds, 288 residues, 1 model selected  

> select add #4

4580 atoms, 4658 bonds, 576 residues, 2 models selected  

> close #3

> hide #1 models

> hide #2 models

> select subtract #4

Nothing selected  

> select add #4

2290 atoms, 2329 bonds, 288 residues, 1 model selected  

> show #2 models

> show #1 models

> close #4

> morph #1,2

Computed 51 frame morph #3  

> coordset #3 1,51

> morph #2,1

Computed 51 frame morph #4  

> coordset #4 1,51

> show #1 models

> show #2 models

> color gray

> undo

> hide #1 models

> show #1 models

> select add #3

2290 atoms, 2329 bonds, 288 residues, 1 model selected  

> color sel gray

> select subtract #3

Nothing selected  

> select add #4

2290 atoms, 2329 bonds, 288 residues, 1 model selected  

> color sel gray

> ui tool show "Show Sequence Viewer"

> sequence chain #2/A

Alignment identifier is 2/A  

> select #2/A:59

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select #2/A:59-97

307 atoms, 311 bonds, 39 residues, 1 model selected  

> color sel red

> select add #2

2290 atoms, 2329 bonds, 288 residues, 1 model selected  

> select subtract #2

Nothing selected  

> select add #3

2290 atoms, 2329 bonds, 288 residues, 1 model selected  

> select subtract #3

Nothing selected  

> ui tool show "Show Sequence Viewer"

> sequence chain #3/A

Alignment identifier is 3/A  

> select #3/A:59

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select #3/A:59-97

307 atoms, 311 bonds, 39 residues, 1 model selected  

> color sel red

> ui tool show "Show Sequence Viewer"

> sequence chain #4/A

Alignment identifier is 4/A  

> select #4/A:59

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select #4/A:59-97

307 atoms, 311 bonds, 39 residues, 1 model selected  

> color sel red

> select add #4

2290 atoms, 2329 bonds, 288 residues, 1 model selected  

> select subtract #4

Nothing selected  

> save C:/WhitePines/Pila-Pita/TFIIF/AlphaFold/TFIIFb-SwissM-AFold-dimer.cxs

> movie record size 3840,2160

> turn y -50 600 rock 600

> wait 300

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\morphSM-
> AF_rockturn-R-t.mp4

Movie saved to \C:WhitePines\\...\movies\morphSM-AF_rockturn-R-t.mp4  
  

> movie record size 3840,2160

> turn y -50 600 rock 600

> wait 300

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\4KmorphSM-
> AF_rockturn-R-Orient1.mp4

Movie saved to \C:WhitePines\\...\movies\4KmorphSM-AF_rockturn-R-Orient1.mp4  
  

> movie record size 3840,2160

> turn y 50 600 rock 600

> wait 300

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\4KmorphSM-
> AF_rockturn-F-Orient1.mp4

Movie saved to \C:WhitePines\\...\movies\4KmorphSM-AF_rockturn-F-Orient1.mp4  
  

> movie record size 1920,1080

> turn y -50 600 rock 600

> wait 300

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\4KmorphSM-
> AF_rockturn-R-Orient1.mp4

Movie saved to \C:WhitePines\\...\movies\4KmorphSM-AF_rockturn-R-Orient1.mp4  
  

> movie record size 1920,1080

> turn y 50 600 rock 600

> wait 300

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\4KmorphSM-
> AF_rockturn-F-Orient1.mp4

Movie saved to \C:WhitePines\\...\movies\4KmorphSM-AF_rockturn-F-Orient1.mp4  
  

> movie record size 1920,1080

> coordset #3 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\4KmorphSM-
> AF_Forward-Orient1.mov

Movie saved to \C:WhitePines\\...\movies\4KmorphSM-AF_Forward-Orient1.mov  
  

> movie record size 1920,1080

> coordset #3 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\4KmorphSM-
> AF_Forward-Orient1.mp4

Movie saved to \C:WhitePines\\...\movies\4KmorphSM-AF_Forward-Orient1.mp4  
  

> movie record size 1920,1080

> coordset #4 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\4KmorphSM-
> AF_Reverse-Orient1.mp4

Movie saved to \C:WhitePines\\...\movies\4KmorphSM-AF_Reverse-Orient1.mp4  
  

> movie record size 3840,2160

> coordset #4 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\4KmorphSM-
> AF_Reverse-Orient1.mp4

Movie saved to \C:WhitePines\\...\movies\4KmorphSM-AF_Reverse-Orient1.mp4  
  

> movie record size 3840,2160

> coordset #3 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\4KmorphSM-
> AF_Forward-Orient1.mp4

Movie saved to \C:WhitePines\\...\movies\4KmorphSM-AF_Forward-Orient1.mp4  
  

> movie record size 3840,2160

> turn y 50 600 rock 600

> wait 300

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\4KmorphSM-
> AF_rockturn-F-Orient1.mp4

Movie saved to \C:WhitePines\\...\movies\4KmorphSM-AF_rockturn-F-Orient1.mp4  
  

> movie record size 3840,2160

> turn y -50 600 rock 600

> wait 300

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\4KmorphSM-
> AF_rockturn-R-Orient1.mp4

Movie saved to \C:WhitePines\\...\movies\4KmorphSM-AF_rockturn-R-Orient1.mp4  
  

> movie record size 3840,2160

> turn x -50 600 rock 600

> wait 300

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\4KmorphSM-
> AF_rockturn-R-Orient1.mp4

Movie saved to \C:WhitePines\\...\movies\4KmorphSM-AF_rockturn-R-Orient1.mp4  
  

> movie record size 3840,2160

> turn y -50 600 rock 600

> wait 300

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\4KmorphSM-
> AF_rockturn-R-Orient1.mp4

Movie saved to \C:WhitePines\\...\movies\4KmorphSM-AF_rockturn-R-Orient1.mp4  
  

> movie record size 7680,4320

> turn y -50 600 rock 600

> wait 300

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_rockturn-R-Orient1.mp4

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_rockturn-R-Orient1.mp4  
  

> movie record size 7680,4320

> turn y -50 600 rock 600

> wait 300

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_rockturn-R-Orient1.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_rockturn-R-Orient1.mov  
  

> movie record size 7680,4320

> turn y 50 600 rock 600

> wait 300

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_rockturn-F-Orient1.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_rockturn-F-Orient1.mov  
  

> movie record size 7680,4320

> coordset #3 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_Forward-Orient1.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_Forward-Orient1.mov  
  

> movie record size 7680,4320

> coordset #4 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_Reverse-Orient1.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_Reverse-Orient1.mov  
  

> scene Orient1

Unknown command: scene Orient1  

> help help:user

> save C:/WhitePines/Pila-Pita/TFIIF/AlphaFold/Orient1.cxs

> save C:/WhitePines/Pila-Pita/TFIIF/AlphaFold/Orient2.cxs

> movie record size 7680,4320

> coordset #4 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_Reverse-Orient2.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_Reverse-Orient2.mov  
  

> movie record size 7680,4320

> coordset #3 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_Forward-Orient2.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_Forward-Orient2.mov  
  

> movie record size 7680,4320

> turn y 50 600 rock 600

> wait 300

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_rockturn-F-Orient2.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_rockturn-F-Orient2.mov  
  

> movie record size 7680,4320

> turn y -50 600 rock 600

> wait 300

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_rockturn-R-Orient2.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_rockturn-R-Orient2.mov  
  

> movie record size 7680,4320

> turn y -50 600 rock 600

> wait 300

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_rockturn-R-Orient2.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_rockturn-R-Orient2.mov  
  

> movie record size 7680,4320

> turn y 50 600 rock 600

> wait 300

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_rockturn-F-Orient2.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_rockturn-F-Orient2.mov  
  

> movie record size 7680,4320

> coordset #3 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_Forward-Orient2.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_Forward-Orient2.mov  
  

> movie record size 7680,4320

> coordset #4 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_Reverse-Orient2.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_Reverse-Orient2.mov  
  

> movie record size 7680,4320

> coordset #4 51,1

> coordset #3 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_RFjoint-Orient2.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_RFjoint-Orient2.mov  
  

> save C:/WhitePines/Pila-Pita/TFIIF/AlphaFold/Orient2.cxs

> save C:/WhitePines/Pila-Pita/TFIIF/AlphaFold/Orient2-closeup.cxs

> movie record size 7680,4320

> coordset #4 51,1

> coordset #3 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_RFmakas-Orient2close.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_RFmakas-Orient2close.mov  
  

> movie record size 7680,4320

> coordset #4 51,1

> coordset #3 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_RFmakas-Orient2close.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_RFmakas-Orient2close.mov  
  

> movie record size 7680,4320

> coordset #3 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_Forward-Orient2close.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_Forward-Orient2close.mov  
  

> movie record size 7680,4320

> coordset #4 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_Reverse-Orient2close.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_Reverse-Orient2close.mov  
  

> save C:/WhitePines/Pila-Pita/TFIIF/AlphaFold/Orient2-closeup.cxs

> save C:/WhitePines/Pila-Pita/TFIIF/AlphaFold/Orient3.cxs

> movie record size 7680,4320

> coordset #4 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_Reverse-Orient3close.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_Reverse-Orient3close.mov  
  

> movie record size 7680,4320

> coordset #3 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_Forward-Orient3close.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_Forward-Orient3close.mov  
  

> save C:/WhitePines/Pila-Pita/TFIIF/AlphaFold/Orient3.cxs

> open C:/WhitePines/Pila-Pita/TFIIF/AlphaFold/Orient2-closeup.cxs

opened ChimeraX session  

> movie record size 7680,4320

> coordset #3 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_Forward-Orient2close.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_Forward-Orient2close.mov  
  

> movie record size 7680,4320

> coordset #4 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_Reverse-Orient2close.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_Reverse-Orient2close.mov  
  

> movie record size 7680,4320

> coordset #4 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_Reverse-Orient2close.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_Reverse-Orient2close.mov  
  

> movie record size 7680,4320

> coordset #3 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_Forward-Orient2close.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_Forward-Orient2close.mov  
  

> save C:/WhitePines/Pila-Pita/TFIIF/AlphaFold/Orient2-closeup.cxs

> movie record size 7680,4320

> coordset #3 51,1

> wait 120

> movie encode C:\WhitePines\Pila-Pita\TFIIF\AlphaFold\movies\8KmorphSM-
> AF_Forward-Orient2close.mov

Movie saved to \C:WhitePines\\...\movies\8KmorphSM-AF_Forward-Orient2close.mov  
  


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.4.dev202203230115 (2022-03-23)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 NVIDIA 391.35
OpenGL renderer: GeForce GTX 580/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Locale: en_US.cp1252
Qt version: PyQt6 6.2.3, Qt 6.2.3
Qt platform: windows

Manufacturer: System manufacturer
Model: System Product Name
OS: Microsoft Windows 10 Pro (Build 19045)
Memory: 17,133,236,224
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-2600K CPU @ 3.40GHz
OSLanguage: en-US

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2021.10.8
    cftime: 1.6.0
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.36.3
    ChimeraX-AtomicLibrary: 6.1.1
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.2
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4.dev202203230115
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.5
    ChimeraX-ModelPanel: 1.3.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.8
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.5
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.8
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.16.3
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.5.1
    decorator: 5.1.1
    docutils: 0.17.1
    entrypoints: 0.4
    filelock: 3.4.2
    fonttools: 4.31.2
    funcparserlib: 1.0.0a0
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.27
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.9.2
    kiwisolver: 1.4.0
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.1.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.4
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 9.0.1
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.28
    psutil: 5.9.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.7
    PyQt6-commercial: 6.2.3
    PyQt6-sip: 13.2.0
    PyQt6-WebEngine-commercial: 6.2.1
    python-dateutil: 2.8.2
    pytz: 2022.1
    pywin32: 303
    pyzmq: 22.3.0
    qtconsole: 5.2.2
    QtPy: 2.0.1
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.9
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (2)

comment:1 by Eric Pettersen, 3 years ago

Cc: Tom Goddard added
Component: Unassigned → Input/Output
Description: modified (diff)
Owner: set to Eric Pettersen
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → Crash using File→Open on Windows and/or in return statement

comment:2 by Eric Pettersen, 3 years ago

Resolution: → can't reproduce
Status: accepted → closed

Hi Uzay,

Thanks for reporting this problem. We believe it is fixed in the final 1.4 release, so please try that (or the 1.5 release candidate).

--Eric

Eric Pettersen
UCSF Computer Graphics Lab

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