Opened 3 years ago

Closed 3 years ago

#7243 closed defect (duplicate)

MD Viewer: Values array length does not match objects array length

Reported by: chimerax-bug-report@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: Third Party Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description (last modified by Eric Pettersen) 

The following bug report has been submitted:
Platform:        Linux-5.4.0-121-generic-x86_64-with-debian-buster-sid
ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.0 (2020-06-04)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> toolshed show

> ui tool show "Molecular Dynamics Viewer"

Please register the custom scheme 'kmd' via
QWebEngineUrlScheme::registerScheme() before installing the custom scheme
handler.  

Chain information for structure #1  
---  
Chain | Description  
| No description available  
  

> select #1

829 atoms, 846 bonds, 1 model selected  

> ~select #1

Nothing selected  

> close

Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 57, in handle_scheme  
self.openFile()  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 227, in openFile  
self.atomStruct.atoms.coords = self.atomLocation[0]  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/molc.py", line 209, in set_prop  
% (len(values), n))  
ValueError: Values array length 829 does not match objects array length 102  
  
ValueError: Values array length 829 does not match objects array length 102  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/molc.py", line 209, in set_prop  
% (len(values), n))  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel  
atms.coords = locs  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/molc.py", line 209, in set_prop  
% (len(values), n))  
ValueError: Values array length 829 does not match objects array length 102  
  
ValueError: Values array length 829 does not match objects array length 102  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/molc.py", line 209, in set_prop  
% (len(values), n))  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel  
atms.coords = locs  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/molc.py", line 209, in set_prop  
% (len(values), n))  
ValueError: Values array length 829 does not match objects array length 102  
  
ValueError: Values array length 829 does not match objects array length 102  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/molc.py", line 209, in set_prop  
% (len(values), n))  
  
See log for complete Python traceback.  
  

[nothing but various tracebacks]

Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py",
line 604, in customEvent  
func(*args, **kw)  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme  
self.changeModel(frame, command[12] == 'T')  
File "/home/rtuma/.local/share/ChimeraX/1.0/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 140, in changeModel  
atms = self.atomStruct.atoms  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 515.48.07
OpenGL renderer: NVIDIA GeForce RTX 3080 Ti/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Gigabyte Technology Co., Ltd.
Model: X399 AORUS PRO
OS: Ubuntu 18.04 bionic
Architecture: 64bit ELF
CPU: 32 AMD Ryzen Threadripper 2950X 16-Core Processor
Cache Size: 512 KB
Memory:
	              total        used        free      shared  buff/cache   available
	Mem:            62G        6.5G        509M        212M         55G         55G
	Swap:          2.0G        1.0M        2.0G

Graphics:
	42:00.0 VGA compatible controller [0300]: NVIDIA Corporation Device [10de:2208] (rev a1)	
	Subsystem: CardExpert Technology Device [10b0:2208]	
	Kernel driver in use: nvidia
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.8

Change History (2)

comment:1 by Eric Pettersen, 3 years ago

Component: Unassigned → Third Party
Description: modified (diff)
Owner: set to Eric Pettersen
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → MD Viewer: Values array length does not match objects array length

comment:2 by Eric Pettersen, 3 years ago

Resolution: → duplicate
Status: accepted → closed
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