Opened 3 years ago
Closed 3 years ago
#7242 closed defect (duplicate)
MD Viewer: Values array length does not match objects array length
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Third Party | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted: Platform: Linux-5.4.0-121-generic-x86_64-with-debian-buster-sid ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > toolshed show > ui tool show "Molecular Dynamics Viewer" Please register the custom scheme 'kmd' via QWebEngineUrlScheme::registerScheme() before installing the custom scheme handler. Chain information for structure #1 --- Chain | Description | No description available > select #1 829 atoms, 846 bonds, 1 model selected > ~select #1 Nothing selected > close Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py", line 604, in customEvent func(*args, **kw) File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 57, in handle_scheme self.openFile() File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 227, in openFile self.atomStruct.atoms.coords = self.atomLocation[0] File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) ValueError: Values array length 829 does not match objects array length 102 ValueError: Values array length 829 does not match objects array length 102 File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) See log for complete Python traceback. Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py", line 604, in customEvent func(*args, **kw) File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme self.changeModel(frame, command[12] == 'T') File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel atms.coords = locs File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) ValueError: Values array length 829 does not match objects array length 102 ValueError: Values array length 829 does not match objects array length 102 File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) See log for complete Python traceback. Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py", line 604, in customEvent func(*args, **kw) File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme self.changeModel(frame, command[12] == 'T') File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel atms.coords = locs File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) ValueError: Values array length 829 does not match objects array length 102 ValueError: Values array length 829 does not match objects array length 102 File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) See log for complete Python traceback. Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py", line 604, in customEvent func(*args, **kw) File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme self.changeModel(frame, command[12] == 'T') File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel atms.coords = locs File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) ValueError: Values array length 829 does not match objects array length 102 ValueError: Values array length 829 does not match objects array length 102 File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) See log for complete Python traceback. Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py", line 604, in customEvent func(*args, **kw) File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme self.changeModel(frame, command[12] == 'T') File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel atms.coords = locs File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) ValueError: Values array length 829 does not match objects array length 102 ValueError: Values array length 829 does not match objects array length 102 File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) See log for complete Python traceback. Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py", line 604, in customEvent func(*args, **kw) File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme self.changeModel(frame, command[12] == 'T') File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel atms.coords = locs File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) ValueError: Values array length 829 does not match objects array length 102 ValueError: Values array length 829 does not match objects array length 102 File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) See log for complete Python traceback. Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py", line 604, in customEvent func(*args, **kw) File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme self.changeModel(frame, command[12] == 'T') File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel atms.coords = locs File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) ValueError: Values array length 829 does not match objects array length 102 ValueError: Values array length 829 does not match objects array length 102 File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) See log for complete Python traceback. Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py", line 604, in customEvent func(*args, **kw) File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme self.changeModel(frame, command[12] == 'T') File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel atms.coords = locs File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) ValueError: Values array length 829 does not match objects array length 102 ValueError: Values array length 829 does not match objects array length 102 File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) See log for complete Python traceback. [deleted a lot of these] Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py", line 604, in customEvent func(*args, **kw) File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme self.changeModel(frame, command[12] == 'T') File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel atms.coords = locs File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) ValueError: Values array length 829 does not match objects array length 102 ValueError: Values array length 829 does not match objects array length 102 File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) See log for complete Python traceback. Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py", line 604, in customEvent func(*args, **kw) File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme self.changeModel(frame, command[12] == 'T') File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel atms.coords = locs File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) ValueError: Values array length 829 does not match objects array length 102 ValueError: Values array length 829 does not match objects array length 102 File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) See log for complete Python traceback. Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py", line 604, in customEvent func(*args, **kw) File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme self.changeModel(frame, command[12] == 'T') File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel atms.coords = locs File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) ValueError: Values array length 829 does not match objects array length 102 ValueError: Values array length 829 does not match objects array length 102 File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) See log for complete Python traceback. Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py", line 604, in customEvent func(*args, **kw) File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme self.changeModel(frame, command[12] == 'T') File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel atms.coords = locs File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) ValueError: Values array length 829 does not match objects array length 102 ValueError: Values array length 829 does not match objects array length 102 File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) See log for complete Python traceback. Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py", line 604, in customEvent func(*args, **kw) File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme self.changeModel(frame, command[12] == 'T') File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel atms.coords = locs File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) ValueError: Values array length 829 does not match objects array length 102 ValueError: Values array length 829 does not match objects array length 102 File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) See log for complete Python traceback. Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py", line 604, in customEvent func(*args, **kw) File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme self.changeModel(frame, command[12] == 'T') File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel atms.coords = locs File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) ValueError: Values array length 829 does not match objects array length 102 ValueError: Values array length 829 does not match objects array length 102 File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) See log for complete Python traceback. Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py", line 604, in customEvent func(*args, **kw) File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme self.changeModel(frame, command[12] == 'T') File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel atms.coords = locs File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) ValueError: Values array length 829 does not match objects array length 102 ValueError: Values array length 829 does not match objects array length 102 File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) See log for complete Python traceback. Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py", line 604, in customEvent func(*args, **kw) File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme self.changeModel(frame, command[12] == 'T') File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel atms.coords = locs File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) ValueError: Values array length 829 does not match objects array length 102 ValueError: Values array length 829 does not match objects array length 102 File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) See log for complete Python traceback. Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py", line 604, in customEvent func(*args, **kw) File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme self.changeModel(frame, command[12] == 'T') File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel atms.coords = locs File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) ValueError: Values array length 829 does not match objects array length 102 ValueError: Values array length 829 does not match objects array length 102 File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) See log for complete Python traceback. Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py", line 604, in customEvent func(*args, **kw) File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme self.changeModel(frame, command[12] == 'T') File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel atms.coords = locs File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) ValueError: Values array length 829 does not match objects array length 102 ValueError: Values array length 829 does not match objects array length 102 File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) See log for complete Python traceback. Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py", line 604, in customEvent func(*args, **kw) File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme self.changeModel(frame, command[12] == 'T') File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel atms.coords = locs File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) ValueError: Values array length 829 does not match objects array length 102 ValueError: Values array length 829 does not match objects array length 102 File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) See log for complete Python traceback. Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py", line 604, in customEvent func(*args, **kw) File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme self.changeModel(frame, command[12] == 'T') File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel atms.coords = locs File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) ValueError: Values array length 829 does not match objects array length 102 ValueError: Values array length 829 does not match objects array length 102 File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) See log for complete Python traceback. Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py", line 604, in customEvent func(*args, **kw) File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 60, in handle_scheme self.changeModel(frame, command[12] == 'T') File "/home/rtuma/.local/share/ChimeraX/1.0/site- packages/com/kdiller/dynamics/viewer/gui.py", line 142, in changeModel atms.coords = locs File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) ValueError: Values array length 829 does not match objects array length 102 ValueError: Values array length 829 does not match objects array length 102 File "/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/atomic/molc.py", line 209, in set_prop % (len(values), n)) See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 515.48.07 OpenGL renderer: NVIDIA GeForce RTX 3080 Ti/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: Gigabyte Technology Co., Ltd. Model: X399 AORUS PRO OS: Ubuntu 18.04 bionic Architecture: 64bit ELF CPU: 32 AMD Ryzen Threadripper 2950X 16-Core Processor Cache Size: 512 KB Memory: total used free shared buff/cache available Mem: 62G 6.5G 487M 209M 55G 55G Swap: 2.0G 768K 2.0G Graphics: 42:00.0 VGA compatible controller [0300]: NVIDIA Corporation Device [10de:2208] (rev a1) Subsystem: CardExpert Technology Device [10b0:2208] Kernel driver in use: nvidia PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → Third Party |
|---|---|
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → MD Viewer: Values array length does not match objects array length |
comment:2 by , 3 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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