![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Closed 4 years ago
#6061 closed defect (can't reproduce)
Crash in event loop / font machinery / saving session
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | pett | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4.dev202112100150 (2021-12-10 01:50:56 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x000000031329d000 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 316 in wait
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 574 in wait
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 1284 in run
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Current thread 0x000000020243a600 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 316 in event_loop
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 867 in init
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1018 in
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
{"app_name":"ChimeraX","timestamp":"2022-02-01 21:46:46.00 -0500","app_version":"1.4.0","slice_uuid":"9596eff5-d2be-396c-9c4e-6177235c3dae","build_version":"1.4.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":1,"is_first_party":0,"bug_type":"309","os_version":"macOS 12.1 (21C52)","incident_id":"D19E43D7-0DF8-4E4E-A703-C366DCAB646F","name":"ChimeraX"}
{
"uptime" : 14000,
"procLaunch" : "2022-01-31 23:22:26.0808 -0500",
"procRole" : "Foreground",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro18,2",
"procStartAbsTime" : 113636292910,
"coalitionID" : 1411,
"osVersion" : {
"train" : "macOS 12.1",
"build" : "21C52",
"releaseType" : "User"
},
"captureTime" : "2022-02-01 21:46:41.0150 -0500",
"incident" : "D19E43D7-0DF8-4E4E-A703-C366DCAB646F",
"bug_type" : "309",
"pid" : 1384,
"procExitAbsTime" : 337175569352,
"translated" : true,
"cpuType" : "X86-64",
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.4.0","CFBundleVersion":"1.4.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"32B13DDB-F408-570B-BF11-58BEA8459E37","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "9E68BBFB-41E2-9468-5E03-195041F4BA66",
"wakeTime" : 2091,
"sleepWakeUUID" : "618578DA-4831-4F4A-87D3-A399D3E0C4CD",
"sip" : "enabled",
"vmRegionInfo" : "0x20 is not in any region. Bytes before following region: 4329947104\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 10215c000-10215d000 [ 4K] r-x\/r-x SM=COW ...acOS\/ChimeraX",
"isCorpse" : 1,
"exception" : {"codes":"0x0000000000000001, 0x0000000000000020","rawCodes":[1,32],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000020"},
"vmregioninfo" : "0x20 is not in any region. Bytes before following region: 4329947104\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 10215c000-10215d000 [ 4K] r-x\/r-x SM=COW ...acOS\/ChimeraX",
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"faultingThread" : 0,
"threads" : 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===== Log before crash start =====
UCSF ChimeraX version: 1.4.dev202112100150 (2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v80.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00399, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00618, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0249, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #20, grid size 340,340,340,
pixel 0.815, shown at level 0.00401, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #25, grid size 340,340,340,
pixel 0.815, shown at level 0.00425, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc copy as #26, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #27, grid size 340,340,340,
pixel 0.815, shown at level 0.00459, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #28, grid size 340,340,340,
pixel 0.815, shown at level 0.00454, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #29, grid size 340,340,340,
pixel 0.815, shown at level 0.00405, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #30, grid size 340,340,340,
pixel 0.815, shown at level 0.00406, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #31, grid size 340,340,340,
pixel 0.815, shown at level 0.00696, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #32, grid size 340,340,340,
pixel 0.815, shown at level 0.00746, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #33, grid size 340,340,340,
pixel 0.815, shown at level 0.00613, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #34, grid size 340,340,340,
pixel 0.815, shown at level 0.00866, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #35, grid size 340,340,340,
pixel 0.815, shown at level 0.00566, step 1, values float32
Log from Sun Jan 30 12:40:49 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v76.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00398, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00618, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0249, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #20, grid size 340,340,340,
pixel 0.815, shown at level 0.00401, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #25, grid size 340,340,340,
pixel 0.815, shown at level 0.00425, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc copy as #26, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #27, grid size 340,340,340,
pixel 0.815, shown at level 0.00459, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #28, grid size 340,340,340,
pixel 0.815, shown at level 0.00454, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #29, grid size 340,340,340,
pixel 0.815, shown at level 0.00405, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #30, grid size 340,340,340,
pixel 0.815, shown at level 0.00406, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #31, grid size 340,340,340,
pixel 0.815, shown at level 0.00612, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #32, grid size 340,340,340,
pixel 0.815, shown at level 0.00746, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #33, grid size 340,340,340,
pixel 0.815, shown at level 0.00613, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #34, grid size 340,340,340,
pixel 0.815, shown at level 0.00866, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #35, grid size 340,340,340,
pixel 0.815, shown at level 0.00601, step 1, values float32
Log from Sun Jan 30 01:28:28 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v75.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00398, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00618, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0249, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #20, grid size 340,340,340,
pixel 0.815, shown at level 0.00401, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #25, grid size 340,340,340,
pixel 0.815, shown at level 0.00425, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc copy as #26, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #27, grid size 340,340,340,
pixel 0.815, shown at level 0.00459, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #28, grid size 340,340,340,
pixel 0.815, shown at level 0.00454, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #29, grid size 340,340,340,
pixel 0.815, shown at level 0.00405, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #30, grid size 340,340,340,
pixel 0.815, shown at level 0.00406, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #31, grid size 340,340,340,
pixel 0.815, shown at level 0.00612, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #32, grid size 340,340,340,
pixel 0.815, shown at level 0.00746, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #33, grid size 340,340,340,
pixel 0.815, shown at level 0.00613, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #34, grid size 340,340,340,
pixel 0.815, shown at level 0.00866, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #35, grid size 340,340,340,
pixel 0.815, shown at level 0.00618, step 1, values float32
Log from Sun Jan 30 01:09:36 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v73.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00398, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00618, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0249, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #20, grid size 340,340,340,
pixel 0.815, shown at level 0.00401, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #25, grid size 340,340,340,
pixel 0.815, shown at level 0.00425, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc copy as #26, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #27, grid size 340,340,340,
pixel 0.815, shown at level 0.00459, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #28, grid size 340,340,340,
pixel 0.815, shown at level 0.00454, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #29, grid size 340,340,340,
pixel 0.815, shown at level 0.00405, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #30, grid size 340,340,340,
pixel 0.815, shown at level 0.00406, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #31, grid size 340,340,340,
pixel 0.815, shown at level 0.00612, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #32, grid size 340,340,340,
pixel 0.815, shown at level 0.00746, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #33, grid size 340,340,340,
pixel 0.815, shown at level 0.00613, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #34, grid size 340,340,340,
pixel 0.815, shown at level 0.00866, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #35, grid size 340,340,340,
pixel 0.815, shown at level 0.00618, step 1, values float32
Log from Sun Jan 30 00:33:51 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v67.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00398, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00612, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0249, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #20, grid size 340,340,340,
pixel 0.815, shown at level 0.00401, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #25, grid size 340,340,340,
pixel 0.815, shown at level 0.00425, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc copy as #26, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #27, grid size 340,340,340,
pixel 0.815, shown at level 0.00459, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #28, grid size 340,340,340,
pixel 0.815, shown at level 0.00454, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #29, grid size 340,340,340,
pixel 0.815, shown at level 0.00405, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #30, grid size 340,340,340,
pixel 0.815, shown at level 0.00406, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #31, grid size 340,340,340,
pixel 0.815, shown at level 0.00612, step 1, values float32
Log from Sat Jan 29 06:07:13 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v65.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00398, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00612, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0249, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #20, grid size 340,340,340,
pixel 0.815, shown at level 0.00401, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #25, grid size 340,340,340,
pixel 0.815, shown at level 0.00425, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc copy as #26, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #27, grid size 340,340,340,
pixel 0.815, shown at level 0.00459, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #28, grid size 340,340,340,
pixel 0.815, shown at level 0.00454, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #29, grid size 340,340,340,
pixel 0.815, shown at level 0.00405, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #30, grid size 340,340,340,
pixel 0.815, shown at level 0.00406, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #31, grid size 340,340,340,
pixel 0.815, shown at level 0.00612, step 1, values float32
Log from Sat Jan 29 05:25:22 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open /Users/edk4001/Desktop/imovie.cxs
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00398, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00612, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0249, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #20, grid size 340,340,340,
pixel 0.815, shown at level 0.00401, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #25, grid size 340,340,340,
pixel 0.815, shown at level 0.00425, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc copy as #26, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #27, grid size 340,340,340,
pixel 0.815, shown at level 0.00459, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #28, grid size 340,340,340,
pixel 0.815, shown at level 0.00454, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #29, grid size 340,340,340,
pixel 0.815, shown at level 0.00405, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #30, grid size 340,340,340,
pixel 0.815, shown at level 0.00406, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc copy as #31, grid size 340,340,340,
pixel 0.815, shown at level 0.00612, step 1, values float32
Log from Fri Jan 28 02:58:11 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v61.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00439, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00585, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0249, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #20, grid size 340,340,340,
pixel 0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #25, grid size 340,340,340,
pixel 0.815, shown at level 0.00425, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc copy as #26, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #27, grid size 340,340,340,
pixel 0.815, shown at level 0.00459, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #28, grid size 340,340,340,
pixel 0.815, shown at level 0.00454, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #29, grid size 340,340,340,
pixel 0.815, shown at level 0.00405, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #30, grid size 340,340,340,
pixel 0.815, shown at level 0.00406, step 1, values float32
Log from Fri Jan 28 00:42:11 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v60.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00439, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00585, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0249, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #20, grid size 340,340,340,
pixel 0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #25, grid size 340,340,340,
pixel 0.815, shown at level 0.00425, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc copy as #26, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #27, grid size 340,340,340,
pixel 0.815, shown at level 0.00459, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #28, grid size 340,340,340,
pixel 0.815, shown at level 0.00454, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #29, grid size 340,340,340,
pixel 0.815, shown at level 0.00405, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #30, grid size 340,340,340,
pixel 0.815, shown at level 0.00406, step 1, values float32
Log from Fri Jan 28 00:37:15 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v59.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00439, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00585, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0249, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #20, grid size 340,340,340,
pixel 0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #25, grid size 340,340,340,
pixel 0.815, shown at level 0.00425, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc copy as #26, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #27, grid size 340,340,340,
pixel 0.815, shown at level 0.00459, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #28, grid size 340,340,340,
pixel 0.815, shown at level 0.00454, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #29, grid size 340,340,340,
pixel 0.815, shown at level 0.00405, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #30, grid size 340,340,340,
pixel 0.815, shown at level 0.00406, step 1, values float32
Log from Fri Jan 28 00:34:04 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v58.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00439, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00585, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0249, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #20, grid size 340,340,340,
pixel 0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #25, grid size 340,340,340,
pixel 0.815, shown at level 0.00425, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc copy as #26, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #27, grid size 340,340,340,
pixel 0.815, shown at level 0.00459, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #28, grid size 340,340,340,
pixel 0.815, shown at level 0.00454, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #29, grid size 340,340,340,
pixel 0.815, shown at level 0.00405, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #30, grid size 340,340,340,
pixel 0.815, shown at level 0.00406, step 1, values float32
Log from Fri Jan 28 00:32:22 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v57.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00439, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00585, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0249, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #20, grid size 340,340,340,
pixel 0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #25, grid size 340,340,340,
pixel 0.815, shown at level 0.00425, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc copy as #26, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #27, grid size 340,340,340,
pixel 0.815, shown at level 0.00459, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #28, grid size 340,340,340,
pixel 0.815, shown at level 0.00454, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #29, grid size 340,340,340,
pixel 0.815, shown at level 0.00405, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #30, grid size 340,340,340,
pixel 0.815, shown at level 0.00406, step 1, values float32
Log from Fri Jan 28 00:27:58 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v56.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00439, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00585, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0249, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #20, grid size 340,340,340,
pixel 0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #25, grid size 340,340,340,
pixel 0.815, shown at level 0.00425, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc copy as #26, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #27, grid size 340,340,340,
pixel 0.815, shown at level 0.00459, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #28, grid size 340,340,340,
pixel 0.815, shown at level 0.00454, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #29, grid size 340,340,340,
pixel 0.815, shown at level 0.00405, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #30, grid size 340,340,340,
pixel 0.815, shown at level 0.00406, step 1, values float32
Log from Fri Jan 28 00:20:38 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v55.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00439, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00585, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0249, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #20, grid size 340,340,340,
pixel 0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #25, grid size 340,340,340,
pixel 0.815, shown at level 0.00425, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc copy as #26, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #27, grid size 340,340,340,
pixel 0.815, shown at level 0.00459, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #28, grid size 340,340,340,
pixel 0.815, shown at level 0.00454, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #29, grid size 340,340,340,
pixel 0.815, shown at level 0.00405, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #30, grid size 340,340,340,
pixel 0.815, shown at level 0.00406, step 1, values float32
Log from Fri Jan 28 00:11:59 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v54.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00439, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00585, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0249, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #20, grid size 340,340,340,
pixel 0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #25, grid size 340,340,340,
pixel 0.815, shown at level 0.00425, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc copy as #26, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #27, grid size 340,340,340,
pixel 0.815, shown at level 0.00459, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #28, grid size 340,340,340,
pixel 0.815, shown at level 0.00454, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #29, grid size 340,340,340,
pixel 0.815, shown at level 0.00405, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #30, grid size 340,340,340,
pixel 0.815, shown at level 0.00406, step 1, values float32
Log from Fri Jan 28 00:10:04 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v53.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00439, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00585, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0249, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #20, grid size 340,340,340,
pixel 0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #25, grid size 340,340,340,
pixel 0.815, shown at level 0.00425, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc copy as #26, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #27, grid size 340,340,340,
pixel 0.815, shown at level 0.00459, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #28, grid size 340,340,340,
pixel 0.815, shown at level 0.00454, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #29, grid size 340,340,340,
pixel 0.815, shown at level 0.00405, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #30, grid size 340,340,340,
pixel 0.815, shown at level 0.00406, step 1, values float32
Log from Thu Jan 27 23:57:26 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v52.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00439, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00585, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0249, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #20, grid size 340,340,340,
pixel 0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #25, grid size 340,340,340,
pixel 0.815, shown at level 0.00425, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc copy as #26, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #27, grid size 340,340,340,
pixel 0.815, shown at level 0.00459, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #28, grid size 340,340,340,
pixel 0.815, shown at level 0.00454, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #29, grid size 340,340,340,
pixel 0.815, shown at level 0.00405, step 1, values float32
Log from Thu Jan 27 23:30:29 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v49.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00415, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00478, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0249, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #20, grid size 340,340,340,
pixel 0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #25, grid size 340,340,340,
pixel 0.815, shown at level 0.00425, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc copy as #26, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #27, grid size 340,340,340,
pixel 0.815, shown at level 0.00459, step 1, values float32
Log from Wed Jan 26 19:15:24 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v45.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00405, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00478, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #20, grid size 340,340,340,
pixel 0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #25, grid size 340,340,340,
pixel 0.815, shown at level 0.00425, step 1, values float32
Log from Wed Jan 26 02:36:50 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v44.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00405, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00478, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #20, grid size 340,340,340,
pixel 0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #25, grid size 340,340,340,
pixel 0.815, shown at level 0.00425, step 1, values float32
Log from Wed Jan 26 02:29:36 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v40.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00405, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00478, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0431, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #20, grid size 340,340,340,
pixel 0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc copy as #25, grid size 340,340,340,
pixel 0.815, shown at level 0.00425, step 1, values float32
Log from Mon Jan 17 23:38:29 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Library/Mobile Documents/com~apple~CloudDocs/apo and
> propofol figures v35.cxs"
Updating list of available bundles failed: Service Unavailable
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0373, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00478, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0134, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #24, grid size 256,256,256,
pixel 1.1, shown at level 0.0382, step 1, values float32
Log from Mon Jan 17 17:22:38 2022UCSF ChimeraX version: 1.4.dev202112082248
(2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/adastra/Desktop/apo and propofol figures v30.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00478, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0134, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened 5U6O_overlay_20oct19_real_space_refined-coot-4.pdb map 4 as #20, grid
size 67,68,63, pixel 2, shown at level 0.11, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Log from Mon Jan 17 16:17:34 2022UCSF ChimeraX version: 1.4.dev202112082248
(2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/adastra/Desktop/apo and propofol figures v25.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00478, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0134, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened 5U6O_overlay_20oct19_real_space_refined-coot-4.pdb map 4 as #20, grid
size 67,68,63, pixel 2, shown at level 0.11, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Log from Mon Jan 17 14:22:04 2022UCSF ChimeraX version: 1.4.dev202112082248
(2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/adastra/Desktop/apo and propofol figures v24.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.034, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0525, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00478, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0134, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0231, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_msp1e3.mrc as #18, grid size
256,256,256, pixel 1.1, shown at level 0.0201, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc as #19, grid size
256,256,256, pixel 1.1, shown at level 0.0591, step 1, values float32
Opened 5U6O_overlay_20oct19_real_space_refined-coot-4.pdb map 4 as #20, grid
size 67,68,63, pixel 2, shown at level 0.11, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #21, grid size
256,256,256, pixel 1.1, shown at level 0.0237, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc copy as #23, grid size 256,256,256,
pixel 1.1, shown at level 0.034, step 1, values float32
Log from Mon Jan 17 14:04:53 2022UCSF ChimeraX version: 1.4.dev202112082248
(2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/adastra/Library/Mobile Documents/com~apple~CloudDocs/apo and
> propofol structure figures v19.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0246, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0365, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.0657, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00478, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0134, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0232, step 1, values float32
Log from Mon Jan 17 11:04:21 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v8.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0246, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0365, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.104, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00478, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0134, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0234, step 1, values float32
Log from Mon Jan 17 00:11:03 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v3.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0246, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0365, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.104, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00478, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0134, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_lipids.mrc as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0234, step 1, values float32
Log from Sun Jan 16 22:23:59 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/edk4001/Desktop/apo and propofol structure figures v2.cxs"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0246, step 1, values float32
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.0365, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.104, step 1, values float32
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00396, step 1, values float32
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00478, step 1, values float32
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0134, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0151, step 1, values float32
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0477, step 1, values float32
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0284, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0309, step 1, values float32
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.223, step 1, values float32
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0217, step 1, values float32
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0487, step 1, values float32
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.0929, step 1, values float32
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #17, grid size
256,256,256, pixel 1.1, shown at level 0.0234, step 1, values float32
Log from Sun Jan 16 18:48:37 2022UCSF ChimeraX version: 1.4.dev202112100150
(2021-12-10)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/edk4001/Dropbox/ekim_nimigeanlab/final em
> maps/20oct19_HCN1_nanodisc_apo/C4/HCN1_20oct19_j252_run_ct17_class001.mrc"
Opened HCN1_20oct19_j252_run_ct17_class001.mrc as #1, grid size 256,256,256,
pixel 1.1, shown at level 0.0204, step 1, values float32
> open "/Users/edk4001/Dropbox/ekim_nimigeanlab/final em
> maps/20oct19_HCN1_nanodisc_apo/C4/HCN1_20oct19_j254_postprocess.mrc"
Opened HCN1_20oct19_j254_postprocess.mrc as #2, grid size 256,256,256, pixel
1.1, shown at level 0.024, step 1, values float32
> open "/Users/edk4001/Dropbox/ekim_nimigeanlab/final em
> maps/20oct19_HCN1_nanodisc_apo/C4/emhancer/HCN1_20oct19_j252_run_ct17_class001_highRes.mrc"
Opened HCN1_20oct19_j252_run_ct17_class001_highRes.mrc as #3, grid size
256,256,256, pixel 1.1, shown at level 0.012, step 1, values float32
> volume #3 level 0.104
> volume #2 level 0.03649
> volume #1 level 0.02348
> open "/Users/edk4001/Dropbox/ekim_nimigeanlab/final em
> maps/21july08_HCN1_nanodisc_1mMDIPP/HCN1_21july08_j230_run_class001.mrc"
Opened HCN1_21july08_j230_run_class001.mrc as #4, grid size 340,340,340, pixel
0.815, shown at level 0.00396, step 2, values float32
> open "/Users/edk4001/Dropbox/ekim_nimigeanlab/final em
> maps/21july08_HCN1_nanodisc_1mMDIPP/HCN1_21july08_j232_postprocess.mrc"
Opened HCN1_21july08_j232_postprocess.mrc as #5, grid size 340,340,340, pixel
0.815, shown at level 0.00478, step 2, values float32
> open "/Users/edk4001/Dropbox/ekim_nimigeanlab/final em
> maps/21july08_HCN1_nanodisc_1mMDIPP/HCN1_21july08_j230_run_class001_highRes.mrc"
Opened HCN1_21july08_j230_run_class001_highRes.mrc as #6, grid size
340,340,340, pixel 0.815, shown at level 0.0134, step 2, values float32
> volume #6 step 1
> volume #5 step 1
> volume #4 step 1
> ui tool show "Fit in Map"
Fit map HCN1_21july08_j230_run_class001.mrc in map
HCN1_20oct19_j252_run_ct17_class001.mrc using 393307 points
correlation = 0.9458, correlation about mean = 0.6208, overlap = 70.06
steps = 240, shift = 2.79, angle = 38.8 degrees
Position of HCN1_21july08_j230_run_class001.mrc (#4) relative to
HCN1_20oct19_j252_run_ct17_class001.mrc (#1) coordinates:
Matrix rotation and translation
0.77891415 0.62713055 -0.00012019 -54.53308125
-0.62713055 0.77891416 0.00005613 119.24697732
0.00012882 0.00003165 0.99999999 -1.39555762
Axis -0.00001952 -0.00019854 -0.99999998
Axis point 141.86143196 136.96766828 0.00000000
Rotation angle (degrees) 38.83873662
Shift along axis 1.37294683
Fit map HCN1_21july08_j232_postprocess.mrc in map
HCN1_20oct19_j252_run_ct17_class001.mrc using 391438 points
correlation = 0.8613, correlation about mean = 0.6001, overlap = 131
steps = 248, shift = 2.74, angle = 38.9 degrees
Position of HCN1_21july08_j232_postprocess.mrc (#5) relative to
HCN1_20oct19_j252_run_ct17_class001.mrc (#1) coordinates:
Matrix rotation and translation
0.77859370 0.62752836 -0.00005805 -54.56432267
-0.62752836 0.77859371 0.00002658 119.35244276
0.00006188 0.00001573 1.00000000 -1.29620980
Axis -0.00000865 -0.00009555 -1.00000000
Axis point 141.85738936 137.00166622 0.00000000
Rotation angle (degrees) 38.86800393
Shift along axis 1.28527767
Fit map HCN1_21july08_j230_run_class001_highRes.mrc in map
HCN1_20oct19_j252_run_ct17_class001.mrc using 392479 points
correlation = 0.7254, correlation about mean = 0.574, overlap = 2053
steps = 360, shift = 2.08, angle = 38.8 degrees
Position of HCN1_21july08_j230_run_class001_highRes.mrc (#6) relative to
HCN1_20oct19_j252_run_ct17_class001.mrc (#1) coordinates:
Matrix rotation and translation
0.77943377 0.62648460 0.00021058 -54.59444395
-0.62648463 0.77943377 0.00009595 119.07048642
-0.00010402 -0.00020671 0.99999997 -1.41125330
Axis -0.00024155 0.00025109 -0.99999994
Axis point 141.80318489 137.06815223 0.00000000
Rotation angle (degrees) 38.79124020
Shift along axis 1.45433780
> open "/Users/edk4001/Dropbox/ekim_nimigeanlab/final em
> maps/21mar08_HCN1_nanodisc_1mMDIPP/C4/HCN1_21mar08_j159_run_ct19_class001_invert.mrc"
Opened HCN1_21mar08_j159_run_ct19_class001_invert.mrc as #7, grid size
256,256,256, pixel 1.08, shown at level 0.0137, step 1, values float32
> open "/Users/edk4001/Dropbox/ekim_nimigeanlab/final em
> maps/21mar08_HCN1_nanodisc_1mMDIPP/C4/HCN1_21mar08_j161_postprocess.mrc"
Opened HCN1_21mar08_j161_postprocess.mrc as #8, grid size 256,256,256, pixel
1.08, shown at level 0.0215, step 1, values float32
> open "/Users/edk4001/Dropbox/ekim_nimigeanlab/final em
> maps/21mar08_HCN1_nanodisc_1mMDIPP/C4/emhancer/HCN1_21mar08_j159_run_ct19_class001_highRes.mrc"
Opened HCN1_21mar08_j159_run_ct19_class001_highRes.mrc as #9, grid size
256,256,256, pixel 1.08, shown at level 0.0141, step 1, values float32
Fit map HCN1_21mar08_j159_run_ct19_class001_invert.mrc in map
HCN1_20oct19_j252_run_ct17_class001.mrc using 167579 points
correlation = 0.9631, correlation about mean = 0.7812, overlap = 119.5
steps = 224, shift = 3.63, angle = 38.3 degrees
Position of HCN1_21mar08_j159_run_ct19_class001_invert.mrc (#7) relative to
HCN1_20oct19_j252_run_ct17_class001.mrc (#1) coordinates:
Matrix rotation and translation
0.78499948 0.61949642 0.00004428 -53.15461214
-0.61949642 0.78499948 -0.00010260 117.50830237
-0.00009832 0.00005311 0.99999999 -0.29353761
Axis 0.00012568 0.00011510 -0.99999999
Axis point 142.71517581 135.33328700 0.00000000
Rotation angle (degrees) 38.27937045
Shift along axis 0.30038238
Fit map HCN1_21mar08_j161_postprocess.mrc in map
HCN1_20oct19_j252_run_ct17_class001.mrc using 167090 points
correlation = 0.7833, correlation about mean = 0.2701, overlap = 179.4
steps = 120, shift = 3.63, angle = 7.81 degrees
Position of HCN1_21mar08_j161_postprocess.mrc (#8) relative to
HCN1_20oct19_j252_run_ct17_class001.mrc (#1) coordinates:
Matrix rotation and translation
0.99073077 -0.13584013 0.00006297 22.53619334
0.13584013 0.99073077 -0.00007403 -14.86143855
-0.00005233 0.00008190 1.00000000 -0.28811022
Axis 0.00057396 0.00042436 0.99999975
Axis point 120.16414960 157.70395849 0.00000000
Rotation angle (degrees) 7.80720524
Shift along axis -0.28148195
Fit map HCN1_21mar08_j159_run_ct19_class001_highRes.mrc in map
HCN1_20oct19_j252_run_ct17_class001.mrc using 167263 points
correlation = 0.6085, correlation about mean = 0.266, overlap = 613.9
steps = 112, shift = 4.12, angle = 7.46 degrees
Position of HCN1_21mar08_j159_run_ct19_class001_highRes.mrc (#9) relative to
HCN1_20oct19_j252_run_ct17_class001.mrc (#1) coordinates:
Matrix rotation and translation
0.99154249 -0.12978246 0.00008591 21.55726410
0.12978245 0.99154248 0.00016798 -14.18916086
-0.00010699 -0.00015541 0.99999998 -0.30139145
Axis -0.00124587 0.00074317 0.99999895
Axis point 119.64452702 158.30295090 0.00000000
Rotation angle (degrees) 7.45702934
Shift along axis -0.33879377
> volume #7 level 0.01514
> volume #8 level 0.03367
> close #8
> volume #9 level 0.06561
> close #9
> open "/Users/edk4001/Dropbox/ekim_nimigeanlab/final em
> maps/21mar08_HCN1_nanodisc_1mMDIPP/C4/emhancer/HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc"
Opened HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.0141, step 1, values float32
> open "/Users/edk4001/Dropbox/ekim_nimigeanlab/final em
> maps/21mar08_HCN1_nanodisc_1mMDIPP/C4/HCN1_21mar08_j161_postprocess_invert.mrc"
Opened HCN1_21mar08_j161_postprocess_invert.mrc as #9, grid size 256,256,256,
pixel 1.08, shown at level 0.0215, step 1, values float32
> volume #8 level 0.0477
> volume #9 level 0.02835
Fit map HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc in map
HCN1_20oct19_j252_run_ct17_class001.mrc using 82282 points
correlation = 0.8452, correlation about mean = 0.5846, overlap = 926.2
steps = 284, shift = 3.64, angle = 38.3 degrees
Position of HCN1_21mar08_j159_run_ct19_class001_highRes_invert.mrc (#8)
relative to HCN1_20oct19_j252_run_ct17_class001.mrc (#1) coordinates:
Matrix rotation and translation
0.78498419 0.61951579 0.00001923 -53.14573873
-0.61951579 0.78498419 0.00009593 117.45771949
0.00004433 -0.00008722 1.00000000 -0.33951614
Axis -0.00014781 -0.00002026 -0.99999999
Axis point 142.64010254 135.29205491 0.00000000
Rotation angle (degrees) 38.28078399
Shift along axis 0.34499248
Fit map HCN1_21mar08_j161_postprocess_invert.mrc in map
HCN1_20oct19_j252_run_ct17_class001.mrc using 100237 points
correlation = 0.9164, correlation about mean = 0.6572, overlap = 219.1
steps = 252, shift = 3.63, angle = 38.3 degrees
Position of HCN1_21mar08_j161_postprocess_invert.mrc (#9) relative to
HCN1_20oct19_j252_run_ct17_class001.mrc (#1) coordinates:
Matrix rotation and translation
0.78478845 0.61976374 -0.00003426 -53.15853914
-0.61976373 0.78478845 0.00005488 117.55748226
0.00006090 -0.00002184 1.00000000 -0.28038633
Axis -0.00006189 -0.00007677 -1.00000000
Axis point 142.69110948 135.32140102 0.00000000
Rotation angle (degrees) 38.29888344
Shift along axis 0.27465108
> open "/Users/edk4001/Dropbox/ekim_nimigeanlab/final em
> maps/21may10_HCN1_nanodisc_500uMAziPM/C4/HCN1_21may10_j77_run_ct14_class001.mrc"
Opened HCN1_21may10_j77_run_ct14_class001.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0104, step 1, values float32
> open "/Users/edk4001/Dropbox/ekim_nimigeanlab/final em
> maps/21may10_HCN1_nanodisc_500uMAziPM/C4/HCN1_21may10_j78_postprocess.mrc"
Opened HCN1_21may10_j78_postprocess.mrc as #11, grid size 256,256,256, pixel
1.08, shown at level 0.0179, step 1, values float32
> open "/Users/edk4001/Dropbox/ekim_nimigeanlab/final em
> maps/21may10_HCN1_nanodisc_500uMAziPM/C4/emhancer/HCN1_21may10_j77_run_ct14_class001_highRes.mrc"
Opened HCN1_21may10_j77_run_ct14_class001_highRes.mrc as #12, grid size
256,256,256, pixel 1.08, shown at level 0.0121, step 1, values float32
Fit map HCN1_21may10_j77_run_ct14_class001.mrc in map
HCN1_20oct19_j252_run_ct17_class001.mrc using 167326 points
correlation = 0.8175, correlation about mean = 0.2492, overlap = 58.02
steps = 160, shift = 5.62, angle = 20.8 degrees
Position of HCN1_21may10_j77_run_ct14_class001.mrc (#10) relative to
HCN1_20oct19_j252_run_ct17_class001.mrc (#1) coordinates:
Matrix rotation and translation
0.93472962 -0.35535972 -0.00000117 60.49148725
0.35535972 0.93472962 -0.00001815 -37.39106889
0.00000755 0.00001655 1.00000000 4.29162653
Axis 0.00004882 -0.00001227 1.00000000
Axis point 132.03194453 145.97462642 0.00000000
Rotation angle (degrees) 20.81549257
Shift along axis 4.29503876
Fit map HCN1_21may10_j78_postprocess.mrc in map
HCN1_20oct19_j252_run_ct17_class001.mrc using 167203 points
correlation = 0.7611, correlation about mean = 0.2725, overlap = 117.5
steps = 100, shift = 2.75, angle = 5.7 degrees
Position of HCN1_21may10_j78_postprocess.mrc (#11) relative to
HCN1_20oct19_j252_run_ct17_class001.mrc (#1) coordinates:
Matrix rotation and translation
0.99509308 -0.08452817 0.05142713 5.98946792
0.08407337 0.99639943 0.01094734 -10.13412611
-0.05216732 -0.00656997 0.99861675 7.32261340
Axis -0.08817806 0.52147034 0.84870096
Axis point 125.77188486 63.97578723 0.00000000
Rotation angle (degrees) 5.70054305
Shift along axis 0.40192314
Fit map HCN1_21may10_j77_run_ct14_class001_highRes.mrc in map
HCN1_20oct19_j252_run_ct17_class001.mrc using 167138 points
correlation = 0.5966, correlation about mean = 0.2774, overlap = 520.6
steps = 128, shift = 2.87, angle = 6.02 degrees
Position of HCN1_21may10_j77_run_ct14_class001_highRes.mrc (#12) relative to
HCN1_20oct19_j252_run_ct17_class001.mrc (#1) coordinates:
Matrix rotation and translation
0.99450966 -0.09277107 0.04841551 7.55873435
0.09238131 0.99567113 0.01023165 -11.18427243
-0.04915513 -0.00570278 0.99877488 6.98965821
Axis -0.07591670 0.46485753 0.88212478
Axis point 126.52516948 74.31077832 0.00000000
Rotation angle (degrees) 6.02410246
Shift along axis 0.39282323
> select #10
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #10,0.69482,0.71857,-0.029574,-50.524,0.71802,-0.69078,0.085239,125.43,0.040821,-0.08046,-0.99592,269.84
> ui mousemode right "move picked models"
> view matrix models
> #10,0.69482,0.71857,-0.029574,-50.747,0.71802,-0.69078,0.085239,126.05,0.040821,-0.08046,-0.99592,277.97
> select #11
2 models selected
> ui mousemode right "rotate selected models"
> volume #11 level 0.03086
> view matrix models
> #11,-0.42968,0.90264,-0.024927,74.223,0.90203,0.42779,-0.05775,-37.311,-0.041463,-0.047299,-0.99802,219.71
> ui mousemode right "move picked models"
> view matrix models
> #11,-0.42968,0.90264,-0.024927,71.782,0.90203,0.42779,-0.05775,-33.433,-0.041463,-0.047299,-0.99802,285.14
> view matrix models #1,1,0,0,0.0047333,0,1,0,-0.0028329,0,0,1,-0.089417
> view matrix models #1,1,0,0,-0.14001,0,1,0,-0.27738,0,0,1,-0.23988
Fit map HCN1_20oct19_j252_run_ct17_class001.mrc in map
HCN1_20oct19_j254_postprocess.mrc using 101700 points
correlation = 0.9119, correlation about mean = 0.8446, overlap = 258
steps = 48, shift = 0.385, angle = 0.00981 degrees
Position of HCN1_20oct19_j252_run_ct17_class001.mrc (#1) relative to
HCN1_20oct19_j254_postprocess.mrc (#2) coordinates:
Matrix rotation and translation
0.99999999 -0.00010878 -0.00008028 0.02648528
0.00010879 0.99999999 0.00010508 -0.02978178
0.00008027 -0.00010509 0.99999999 -0.00865637
Axis -0.61369172 -0.46881095 0.63529424
Axis point 307.36375405 199.50155779 0.00000000
Rotation angle (degrees) 0.00981072
Shift along axis -0.00779111
Fit map HCN1_21may10_j78_postprocess.mrc in map
HCN1_20oct19_j252_run_ct17_class001_highRes.mrc using 67203 points
correlation = 0.7959, correlation about mean = 0.5426, overlap = 1075
steps = 140, shift = 7.52, angle = 20.2 degrees
Position of HCN1_21may10_j78_postprocess.mrc (#11) relative to
HCN1_20oct19_j252_run_ct17_class001_highRes.mrc (#3) coordinates:
Matrix rotation and translation
-0.71014990 0.70405051 0.00009745 141.13666213
0.70405051 0.71014990 0.00001189 -54.45626753
-0.00006083 0.00007705 -1.00000000 275.98181436
Axis 0.38068987 0.92470277 0.00002342
Axis point 81.78423754 0.00000000 137.98836092
Rotation angle (degrees) 179.99509624
Shift along axis 3.37990069
> show #!2 models
> show #!3 models
> hide #!3 models
> hide #!2 models
Fit map HCN1_21may10_j78_postprocess.mrc in map
HCN1_20oct19_j252_run_ct17_class001.mrc using 67203 points
correlation = 0.9284, correlation about mean = 0.5745, overlap = 145.9
steps = 28, shift = 0.0399, angle = 0.0654 degrees
Position of HCN1_21may10_j78_postprocess.mrc (#11) relative to
HCN1_20oct19_j252_run_ct17_class001.mrc (#1) coordinates:
Matrix rotation and translation
-0.71087516 0.70331821 0.00004830 141.32298587
0.70331821 0.71087516 0.00007344 -54.49459911
0.00001732 0.00008618 -1.00000000 275.96777491
Axis 0.38021183 0.92489943 0.00003997
Axis point 81.86368515 0.00000000 137.98443094
Rotation angle (degrees) 179.99904031
Shift along axis 3.34167824
> ui mousemode right "rotate selected models"
> select #12
2 models selected
> view matrix models
> #12,0.42154,-0.89615,0.13866,190.28,-0.8973,-0.4343,-0.078973,343.8,0.13099,-0.091132,-0.98719,264.04
> ui mousemode right "move picked models"
> view matrix models
> #12,0.42154,-0.89615,0.13866,184.08,-0.8973,-0.4343,-0.078973,332.88,0.13099,-0.091132,-0.98719,264.32
> volume #12 level 0.06746
Fit map HCN1_21may10_j77_run_ct14_class001_highRes.mrc in map
HCN1_20oct19_j252_run_ct17_class001.mrc using 73051 points
correlation = 0.8512, correlation about mean = 0.5178, overlap = 897.4
steps = 168, shift = 5.66, angle = 22 degrees
Position of HCN1_21may10_j77_run_ct14_class001_highRes.mrc (#12) relative to
HCN1_20oct19_j252_run_ct17_class001.mrc (#1) coordinates:
Matrix rotation and translation
0.71356739 -0.70058665 0.00006452 138.48820988
-0.70058665 -0.71356738 -0.00000118 335.10388534
0.00004687 -0.00004436 -1.00000002 275.89818767
Axis -0.92561471 0.37846717 0.00003691
Axis point 0.00000000 195.86634707 137.94974094
Rotation angle (degrees) 179.99866365
Shift along axis -1.35072105
> open "/Users/edk4001/Dropbox/ekim_nimigeanlab/final em
> maps/21feb22_HCN1_nanodisc_50uMAziPM/C4/HCN1_21feb22_j240_run_ct18_class001.mrc"
Opened HCN1_21feb22_j240_run_ct18_class001.mrc as #13, grid size 256,256,256,
pixel 1.1, shown at level 0.0197, step 1, values float32
> open "/Users/edk4001/Dropbox/ekim_nimigeanlab/final em
> maps/21feb22_HCN1_nanodisc_50uMAziPM/C4/HCN1_21feb22_j242_postprocess.mrc"
Opened HCN1_21feb22_j242_postprocess.mrc as #14, grid size 256,256,256, pixel
1.1, shown at level 0.0247, step 1, values float32
> open "/Users/edk4001/Dropbox/ekim_nimigeanlab/final em
> maps/21feb22_HCN1_nanodisc_50uMAziPM/C4/emhancer/HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc"
Opened HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc as #15, grid size
256,256,256, pixel 1.1, shown at level 0.014, step 1, values float32
Fit map HCN1_21feb22_j240_run_ct18_class001.mrc in map
HCN1_20oct19_j252_run_ct17_class001.mrc using 167624 points
correlation = 0.9661, correlation about mean = 0.7179, overlap = 139.3
steps = 236, shift = 3.43, angle = 39.7 degrees
Position of HCN1_21feb22_j240_run_ct18_class001.mrc (#13) relative to
HCN1_20oct19_j252_run_ct17_class001.mrc (#1) coordinates:
Matrix rotation and translation
0.76937761 0.63879425 0.00004156 -57.27031542
-0.63879425 0.76937761 0.00002538 121.96321213
-0.00001576 -0.00004608 1.00000000 -3.40672603
Axis -0.00005593 0.00004487 -1.00000000
Axis point 140.27590211 140.29695547 0.00000000
Rotation angle (degrees) 39.70196846
Shift along axis 3.41540113
Fit map HCN1_21feb22_j242_postprocess.mrc in map
HCN1_20oct19_j252_run_ct17_class001.mrc using 167503 points
correlation = 0.9091, correlation about mean = 0.6979, overlap = 269.1
steps = 236, shift = 3.37, angle = 39.9 degrees
Position of HCN1_21feb22_j242_postprocess.mrc (#14) relative to
HCN1_20oct19_j252_run_ct17_class001.mrc (#1) coordinates:
Matrix rotation and translation
0.76729353 0.64129606 0.00002384 -57.32109711
-0.64129606 0.76729353 -0.00001180 122.61550501
-0.00002586 -0.00000623 1.00000000 -3.35034626
Axis 0.00000434 0.00003874 -1.00000000
Axis point 140.29211000 140.29088708 0.00000000
Rotation angle (degrees) 39.88853171
Shift along axis 3.35484822
Fit map HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc in map
HCN1_20oct19_j252_run_ct17_class001.mrc using 166884 points
correlation = 0.7469, correlation about mean = 0.6241, overlap = 927.8
steps = 356, shift = 4.41, angle = 39.5 degrees
Position of HCN1_21feb22_emhancer_run_ct18_class001_highRes.mrc (#15) relative
to HCN1_20oct19_j252_run_ct17_class001.mrc (#1) coordinates:
Matrix rotation and translation
0.77101218 0.63682018 0.00053525 -57.32964195
-0.63682026 0.77101230 -0.00002295 121.46029520
-0.00042729 -0.00032316 0.99999986 -3.36044757
Axis -0.00023571 0.00075574 -0.99999969
Axis point 140.22391773 140.44529064 0.00000000
Rotation angle (degrees) 39.55513243
Shift along axis 3.46575221
> volume #15 level 0.0929
> volume #14 level 0.04869
> volume #13 level 0.02171
> volume #12 level 0.2225
> select clear
> hide #!15 models
> hide #!14 models
> hide #!12 models
> hide #!13 models
> ui mousemode right "map eraser"
> volume erase #1 center 140.29,140.29,144.37 radius 15.683
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #17, grid size
256,256,256, pixel 1.1, shown at step 1, values float32
> volume erase #17 center 156.86,146.16,177.32 radius 27.076
> volume erase #17 center 144.19,121.71,178.13 radius 27.076
> volume erase #17 center 126.46,141.4,177.42 radius 27.076
> volume erase #17 center 144.45,163.26,182.03 radius 27.076
> volume erase #17 center 104.43,126.34,174.05 radius 27.076
> volume #1 level 0.02458
> volume #17 level 0.02383
> volume #17 level 0.02312
> volume #17 level 0.02223
> volume erase #17 center 90.713,148.64,147.35 radius 18.097
> volume erase #17 center 104.47,141.72,143.12 radius 12.065
> volume erase #17 center 108.8,135.62,145.28 radius 12.065
> volume erase #17 center 116.56,135.37,147.31 radius 7.4353
> volume erase #17 center 117.85,127.51,142.46 radius 4.3489
> volume erase #17 center 117.41,128.23,138.3 radius 3.3669
> volume erase #17 center 114.33,130.37,136.04 radius 3.3669
> volume erase #17 center 117.16,132.28,131.82 radius 3.3669
> volume erase #17 center 123.87,129.15,145.24 radius 3.3669
> volume erase #17 center 128.24,128.61,144.12 radius 3.3669
> volume erase #17 center 128.85,126.75,151.92 radius 8.1367
> volume erase #17 center 123.65,133.67,153.89 radius 8.1367
> volume erase #17 center 112.98,127.58,146.35 radius 8.1367
> volume erase #17 center 119.81,126.26,146.22 radius 5.8921
> volume erase #17 center 111.7,149.26,151.92 radius 8.9784
> volume erase #17 center 106.87,156.21,146.95 radius 8.9784
> volume erase #17 center 123.03,134.72,131.79 radius 3.3669
> volume erase #17 center 124.4,137.17,136.86 radius 3.3669
> volume erase #17 center 125.49,135.08,136.44 radius 3.3669
> volume erase #17 center 121.61,139.79,138.87 radius 3.3669
> volume erase #17 center 124.9,135.04,142.44 radius 3.3669
> volume erase #17 center 122.62,136.3,141.86 radius 3.3669
> volume erase #17 center 123.61,134.1,143.66 radius 3.3669
> volume erase #17 center 124.33,139.43,145.11 radius 5.8921
> volume erase #17 center 126.15,138.17,136.4 radius 5.8921
> volume erase #17 center 129.56,134.38,144.9 radius 5.8921
> volume erase #17 center 116.78,145.71,137.81 radius 5.8921
> close #17
> volume erase #1 center 117.04,145.55,138.61 radius 5.8921
Opened HCN1_20oct19_j252_run_ct17_class001.mrc copy as #17, grid size
256,256,256, pixel 1.1, shown at step 1, values float32
> volume erase #17 center 112.33,131.91,175.06 radius 28.058
> volume erase #17 center 133.69,114.85,177.37 radius 28.058
> volume erase #17 center 155.45,134.77,175.53 radius 28.058
> volume erase #17 center 155.12,144.68,176.04 radius 28.058
> volume erase #17 center 137.99,156.94,174.81 radius 28.058
> volume #17 level 0.02335
> volume erase #17 center 104.95,127.92,178.52 radius 7.1547
> volume erase #17 center 115.29,147.27,194.22 radius 7.1547
> volume erase #17 center 111.48,138.3,140.37 radius 7.1547
> volume erase #17 center 112.08,129.94,140.87 radius 7.1547
> volume erase #17 center 121.67,125.5,139.69 radius 3.0863
> volume erase #17 center 117.23,127.75,140.84 radius 3.0863
> volume erase #17 center 118.67,127.15,144.05 radius 3.0863
> volume erase #17 center 121.63,127.93,144.01 radius 3.0863
> volume erase #17 center 123.3,126.53,143.96 radius 3.0863
> volume erase #17 center 126.3,125.45,143.95 radius 3.0863
> volume erase #17 center 125.55,130.35,145.32 radius 3.0863
> volume erase #17 center 127.06,127.28,144.59 radius 3.0863
> volume erase #17 center 128.12,130.42,145.29 radius 3.0863
> volume erase #17 center 119.54,132.7,128.48 radius 3.0863
> volume erase #17 center 119.38,132.19,129.02 radius 3.0863
> volume erase #17 center 115.92,132.92,131.44 radius 3.0863
> volume erase #17 center 122.67,135.43,131.84 radius 3.0863
> volume erase #17 center 121.26,134.77,142.81 radius 3.0863
> volume erase #17 center 124.86,132.8,144.59 radius 3.0863
> volume erase #17 center 125.32,134.44,140.8 radius 3.0863
> volume erase #17 center 114.54,128.21,142.45 radius 3.0863
[Repeated 1 time(s)]
> volume erase #17 center 119.45,127.53,142.07 radius 3.0863
> volume erase #17 center 118.63,133.5,145.06 radius 3.7878
> volume erase #17 center 117.93,129.25,146.74 radius 3.7878
> volume erase #17 center 115.57,136.93,145.28 radius 3.7878
> volume erase #17 center 115.9,139.2,142.73 radius 3.7878
> volume erase #17 center 115.9,139.2,142.73 radius 6.1727
> volume erase #17 center 96.603,142.65,142.62 radius 15.291
> volume erase #17 center 109.25,138.83,146.82 radius 7.4353
> volume erase #17 center 111.06,139.79,143.78 radius 7.4353
> volume erase #17 center 124.64,130.63,146.62 radius 4.9101
> volume erase #17 center 125.33,135.32,137.01 radius 2.8058
> volume erase #17 center 124.26,138.52,137.46 radius 2.8058
> volume erase #17 center 122.53,138.23,138.6 radius 2.8058
> volume erase #17 center 127.14,134.43,138.53 radius 2.8058
> volume erase #17 center 125.31,142.46,138.78 radius 2.8058
> volume erase #17 center 124.86,139.83,135.09 radius 2.8058
> volume erase #17 center 126.52,137.21,132.55 radius 2.8058
> volume erase #17 center 127.48,137.32,131.71 radius 2.8058
> volume erase #17 center 124.36,133,129.82 radius 1.8237
> volume erase #17 center 125.97,126.06,133.79 radius 1.8237
> volume erase #17 center 121.87,133.44,123 radius 1.8237
> volume erase #17 center 121.22,124.39,136.84 radius 1.8237
> volume erase #17 center 119.9,124.81,136.84 radius 1.8237
> volume erase #17 center 124.47,126.07,141.09 radius 1.8237
> volume erase #17 center 130.95,131.41,148.68 radius 7.1547
> volume erase #17 center 129.14,136.73,148.54 radius 7.1547
> volume erase #17 center 132.52,133.93,151.28 radius 7.1547
> volume erase #17 center 122.11,146.54,152.72 radius 7.1547
> volume erase #17 center 116.23,143.88,152.85 radius 7.1547
> volume erase #17 center 120.91,139.37,146.92 radius 7.1547
> volume erase #17 center 129.31,144.05,148.71 radius 7.1547
> volume erase #17 center 127.57,139.34,139.67 radius 4.0684
> volume erase #17 center 124.36,142.83,141.16 radius 4.0684
> volume erase #17 center 123.71,139.92,131.72 radius 4.0684
> volume erase #17 center 123.52,140.85,134.65 radius 4.0684
> save "/Users/edk4001/Desktop/apo and propofol structure figures.cxs"
> volume erase #17 center 124.64,137.4,127.27 radius 2.5252
> volume erase #17 center 122.28,140.85,126.89 radius 2.5252
> volume erase #17 center 126.42,142,129.41 radius 2.5252
> volume erase #17 center 125.65,141.19,127.97 radius 2.5252
> volume erase #17 center 121.83,146.91,134.84 radius 1.2626
> volume erase #17 center 122.44,148.18,135.92 radius 1.2626
> volume erase #17 center 127.28,144.94,138.06 radius 1.2626
> volume erase #17 center 127.03,144.59,137.53 radius 1.2626
> volume erase #17 center 128.08,145.33,136.84 radius 1.2626
> volume erase #17 center 128.69,143.71,138.12 radius 1.2626
> volume erase #17 center 128.68,144.32,138.67 radius 1.2626
> volume erase #17 center 128.66,142.84,137.25 radius 1.2626
> volume erase #17 center 122.55,147.84,140.75 radius 1.2626
> volume erase #17 center 121.94,149.32,140.6 radius 1.2626
> volume erase #17 center 115.2,151.76,139 radius 1.2626
> volume erase #17 center 111.58,149.6,139.27 radius 1.2626
> volume erase #17 center 111.58,149.6,139.27 radius 2.5252
> volume erase #17 center 115.38,144.7,133.3 radius 2.5252
> volume erase #17 center 112.49,140.43,129.32 radius 2.5252
> volume erase #17 center 130.54,150.86,147.45 radius 2.5252
> volume erase #17 center 116.22,156,152.75 radius 7.7158
> volume erase #17 center 108.07,151.84,149.64 radius 7.7158
> volume erase #17 center 121.36,152.11,140.99 radius 2.5252
> volume erase #17 center 121.77,144.56,136.69 radius 1.2626
> volume erase #17 center 116.3,148.28,132.34 radius 3.3669
> volume erase #17 center 117.01,149.1,132.66 radius 3.3669
> volume erase #17 center 116.73,148.93,131.86 radius 3.3669
> volume erase #17 center 100.5,157.48,151.21 radius 10.522
> volume erase #17 center 92.619,159.7,140.78 radius 10.522
> volume erase #17 center 105.21,148.18,133.5 radius 10.522
> volume erase #17 center 111.32,151.64,134.23 radius 5.3309
> volume erase #17 center 111.62,147.06,129.55 radius 5.3309
> volume erase #17 center 106.14,138.98,124.82 radius 5.3309
> volume erase #17 center 110.87,145.04,123 radius 5.3309
> volume erase #17 center 110.84,142.68,124.77 radius 4.0684
> volume erase #17 center 113.6,152.63,130.35 radius 4.0684
> volume erase #17 center 114.95,148.92,126.35 radius 4.0684
> volume erase #17 center 116.95,148.55,127.01 radius 3.0863
> volume erase #17 center 115.86,157.29,131.54 radius 3.0863
> volume erase #17 center 114.85,156.4,135.37 radius 3.0863
> volume erase #17 center 113.41,158.59,139.82 radius 3.0863
> volume erase #17 center 113.43,155.27,139.9 radius 3.0863
> volume erase #17 center 114.08,156.63,138.48 radius 3.0863
> volume erase #17 center 107.24,166.2,141.04 radius 3.0863
> volume erase #17 center 111.8,166.1,142.38 radius 3.0863
> volume erase #17 center 108.78,165.25,139.02 radius 3.0863
> volume erase #17 center 111.37,164.04,138.73 radius 3.0863
> volume erase #17 center 112.61,161.23,136.39 radius 3.0863
> volume erase #17 center 113.53,162.09,136.28 radius 3.0863
> volume erase #17 center 109.7,162.86,135.53 radius 3.0863
> volume erase #17 center 111.68,163.08,135.69 radius 3.0863
> volume erase #17 center 110.98,164.37,135.89 radius 3.0863
> volume erase #17 center 111.35,166.75,140.67 radius 3.0863
> volume erase #17 center 106.8,163.42,142.23 radius 4.6295
> volume erase #17 center 101.6,165.56,142.55 radius 4.6295
> volume erase #17 center 108.98,164.79,144.5 radius 4.6295
> volume erase #17 center 107.46,159.74,143.77 radius 4.6295
> volume erase #17 center 104.12,159.97,137.44 radius 4.6295
> volume erase #17 center 109.19,160.76,140.02 radius 4.6295
> volume erase #17 center 107.3,163.5,136.17 radius 4.6295
> volume erase #17 center 102.18,163.04,131.92 radius 4.6295
> volume erase #17 center 98.71,158.24,131.93 radius 4.6295
> volume erase #17 center 107.17,162.93,128.11 radius 4.6295
> volume erase #17 center 110.69,160.41,131.79 radius 4.6295
> volume erase #17 center 109.78,159.35,132.53 radius 4.6295
> volume erase #17 center 111.04,160.72,130.08 radius 4.6295
> volume erase #17 center 106.63,158.07,127.36 radius 4.6295
> volume erase #17 center 102.97,160.68,125.55 radius 4.6295
> volume erase #17 center 98.634,157.22,140.64 radius 4.6295
> volume erase #17 center 101.86,159.22,142.47 radius 4.6295
> volume erase #17 center 105.69,155.07,143.49 radius 4.6295
> volume erase #17 center 111.93,160.23,128.33 radius 4.6295
> volume erase #17 center 114,161.88,123.83 radius 2.2446
> volume erase #17 center 115.47,160.86,124.38 radius 2.2446
> volume erase #17 center 115.31,161.55,125.81 radius 2.2446
> volume erase #17 center 113.97,166.12,141.98 radius 2.2446
> volume erase #17 center 113.39,163.33,141.98 radius 2.2446
> volume erase #17 center 122.47,166.26,137.2 radius 2.2446
> volume erase #17 center 133.88,165.15,132.52 radius 2.2446
> volume erase #17 center 131.76,162.08,130.34 radius 2.2446
> volume erase #17 center 138.47,168.02,130.74 radius 2.2446
> save "/Users/edk4001/Desktop/apo and propofol structure figures v2.cxs"
——— End of log from Sun Jan 16 18:48:37 2022 ———
opened ChimeraX session
> ui mousemode right "map eraser"
> volume erase #17 center 132.53,131.49,139.45 radius 3.4285
> volume erase #17 center 136.47,129.81,143.38 radius 3.4285
> volume erase #17 center 139,131.86,141.85 radius 3.4285
> volume erase #17 center 136.06,134.9,139.42 radius 3.4285
> volume erase #17 center 132.93,134.13,140.33 radius 3.4285
> volume erase #17 center 133.31,128.84,144.58 radius 3.4285
> volume erase #17 center 134.93,140.99,145.06 radius 3.4285
> volume erase #17 center 135.15,142.65,140.21 radius 3.4285
> volume erase #17 center 132.15,140.41,139.15 radius 4.0285
> volume erase #17 center 131.25,146.22,140.65 radius 4.0285
> volume erase #17 center 131.07,147.33,140.68 radius 4.0285
> volume erase #17 center 133.07,146.37,143.86 radius 4.0285
> volume erase #17 center 133.25,134.84,136.41 radius 4.0285
> volume erase #17 center 131.99,134.82,136.38 radius 4.0285
> volume erase #17 center 134.58,134.9,136.45 radius 4.0285
> volume erase #17 center 130.75,142,134.85 radius 4.0285
> volume erase #17 center 134.76,138.74,134.52 radius 4.0285
> volume erase #17 center 134.22,136.86,133.99 radius 4.0285
> volume erase #17 center 133.62,144.38,133.84 radius 4.0285
> volume erase #17 center 132.4,143.36,131.61 radius 4.0285
> volume erase #17 center 134.61,140.91,130.72 radius 4.0285
> volume erase #17 center 131.69,139,127.84 radius 4.0285
> volume erase #17 center 128.87,142.83,126.16 radius 4.0285
> volume erase #17 center 128.22,140.8,130.43 radius 4.0285
> volume erase #17 center 123.45,145.15,126.27 radius 3.4285
> volume erase #17 center 123.19,145.72,126.35 radius 3.4285
> volume erase #17 center 121.91,140.03,121.7 radius 3.4285
> volume erase #17 center 123.17,141.48,123.64 radius 3.4285
> volume erase #17 center 120.16,145.22,122.57 radius 3.4285
> volume erase #17 center 123.51,146.1,121.68 radius 3.4285
> volume erase #17 center 117.46,147.95,121.58 radius 3.4285
> volume erase #17 center 113.28,156.75,125.27 radius 3.4285
> volume erase #17 center 111.85,153.98,125.29 radius 3.4285
> volume erase #17 center 113.91,152.55,121.62 radius 3.4285
> volume erase #17 center 107.74,153.05,122.23 radius 3.4285
> volume erase #17 center 110.94,159.11,120.02 radius 3.4285
> volume erase #17 center 112.07,158.1,119.42 radius 3.4285
> volume erase #17 center 108.93,160.21,123.35 radius 3.4285
> volume erase #17 center 109.12,157.82,122.17 radius 3.4285
> volume erase #17 center 111.59,155.77,119.87 radius 3.4285
> volume erase #17 center 112.43,155.52,115.84 radius 3.4285
> volume erase #17 center 113.66,153.39,115.75 radius 3.4285
> volume erase #17 center 112.44,152.24,117.76 radius 3.4285
> volume erase #17 center 113.46,152.17,119.11 radius 3.4285
> volume erase #17 center 112.42,155.32,117.86 radius 3.4285
> volume erase #17 center 101.24,156.8,120.97 radius 7.6284
> volume erase #17 center 100.7,155.22,120.95 radius 7.6284
> volume erase #17 center 100.53,153.98,121.24 radius 7.6284
> volume erase #17 center 96.025,150.96,119.44 radius 7.6284
> volume erase #17 center 89.792,143.57,118.24 radius 7.6284
> volume erase #17 center 97.876,154.63,127.34 radius 7.6284
[Repeated 1 time(s)]
> volume erase #17 center 98.422,166.3,111.53 radius 7.6284
> volume erase #17 center 99.263,167.65,107.13 radius 7.6284
> volume erase #17 center 102.63,165.49,103.9 radius 7.6284
> volume erase #17 center 105.08,161.66,112.05 radius 7.6284
> volume erase #17 center 109.62,161.84,106.44 radius 5.1428
> volume erase #17 center 112.99,161.8,105.93 radius 5.1428
> volume erase #17 center 115.57,162.09,112.4 radius 5.1428
> volume erase #17 center 113.9,165.93,104.96 radius 5.1428
> volume erase #17 center 109.24,166.82,103.8 radius 5.1428
> volume erase #17 center 96.791,158.9,111.44 radius 5.1428
> volume erase #17 center 96.116,152.95,109.59 radius 5.1428
> volume erase #17 center 92.527,151.22,112.18 radius 5.1428
> volume erase #17 center 97.325,148.03,114.59 radius 5.1428
> volume erase #17 center 94.613,147.33,109.87 radius 5.1428
> volume erase #17 center 94.941,147.06,111.42 radius 5.1428
> volume erase #17 center 100.95,147.66,108.1 radius 5.1428
> volume erase #17 center 105.42,146.15,115.22 radius 5.1428
> volume erase #17 center 103.66,148.75,117 radius 5.1428
> volume erase #17 center 103.92,149.26,119.98 radius 5.1428
> volume erase #17 center 110.36,154.39,114.26 radius 5.1428
> volume erase #17 center 111.61,155.99,110.92 radius 5.1428
> volume erase #17 center 117.6,155.04,103.44 radius 5.1428
> volume erase #17 center 116.36,155.34,104.86 radius 5.1428
> volume erase #17 center 112.08,159.32,102.55 radius 5.1428
> volume erase #17 center 109.92,160.89,102.73 radius 5.1428
> volume erase #17 center 108.16,164.52,100.54 radius 5.1428
> volume erase #17 center 102.66,155.13,110.94 radius 5.1428
> volume erase #17 center 99.893,157.7,105.29 radius 5.1428
> volume erase #17 center 126.2,156.8,132.36 radius 2.4857
> volume erase #17 center 130.85,168.4,136.51 radius 2.4857
> volume erase #17 center 126.01,155.73,134.14 radius 2.4857
> volume erase #17 center 124.78,159.58,135.91 radius 2.4857
> volume erase #17 center 134.56,158.66,123.46 radius 2.4857
> volume erase #17 center 120.93,148.74,122.26 radius 2.4857
> rename #17 HCN1_20oct19_j252_run_ct17_class001_lipids.mrc
> volume erase #17 center 121.85,147.76,117.53 radius 2.4857
> volume erase #17 center 119.67,147.64,118.66 radius 2.4857
> volume erase #17 center 123.65,143.97,118.28 radius 2.4857
> volume erase #17 center 123.65,143.97,118.28 radius 4.1999
> volume erase #17 center 121.92,145.88,116.22 radius 4.1999
> volume erase #17 center 119.27,144.18,115.55 radius 4.1999
> volume erase #17 center 114.65,144.37,118.37 radius 4.1999
> volume erase #17 center 112.32,146.25,118.09 radius 4.1999
> volume erase #17 center 110.41,144.37,117.37 radius 4.1999
> volume erase #17 center 111.56,147.15,115.93 radius 4.1999
> volume erase #17 center 110.79,138.89,118.96 radius 4.1999
> volume erase #17 center 116.13,144.9,113.62 radius 4.1999
> volume erase #17 center 113.62,146.81,109.77 radius 4.1999
> volume erase #17 center 108.14,149.5,105.71 radius 4.1999
> volume erase #17 center 107.53,151.19,108.53 radius 4.1999
> volume erase #17 center 109.75,152.61,107.32 radius 4.1999
> volume erase #17 center 110.55,150.55,109.74 radius 4.1999
> volume erase #17 center 114.8,151.16,112.17 radius 4.1999
> volume erase #17 center 108.55,146.45,108.71 radius 4.1999
> volume erase #17 center 101.35,142.7,108.62 radius 4.1999
> volume erase #17 center 101.92,142.08,110.19 radius 4.1999
> volume erase #17 center 103.42,142.31,114.98 radius 4.1999
> volume erase #17 center 104.62,141.06,117.43 radius 4.1999
> volume erase #17 center 104.33,142.21,116.73 radius 4.1999
> volume erase #17 center 99.819,142.78,119.49 radius 4.1999
> volume erase #17 center 98.144,141.56,113.37 radius 4.1999
> volume erase #17 center 95.278,141.16,107.47 radius 4.1999
> volume erase #17 center 99.64,140.01,106.6 radius 4.1999
> volume erase #17 center 102.22,134.14,107.53 radius 4.1999
> volume erase #17 center 105.95,128.54,107.34 radius 4.1999
> volume erase #17 center 106.92,146.12,103.17 radius 4.1999
> volume erase #17 center 111.58,145.13,106.64 radius 4.1999
> volume erase #17 center 111.74,144.98,106.77 radius 4.1999
> volume erase #17 center 111.4,145.19,107.37 radius 4.1999
> volume erase #17 center 103.81,154.76,107.45 radius 4.1999
> volume erase #17 center 124.11,155.81,102.44 radius 4.1999
> volume erase #17 center 124.19,156.72,97.094 radius 4.1999
> volume erase #17 center 122.81,152.85,106.83 radius 4.1999
> volume erase #17 center 120.76,153.39,107.63 radius 4.1999
> volume erase #17 center 120.54,152.86,109.01 radius 4.1999
> volume erase #17 center 119.66,151.7,110.53 radius 4.1999
> volume erase #17 center 119.35,149.28,111.05 radius 4.1999
> volume erase #17 center 123.25,151.04,111.87 radius 4.1999
> volume erase #17 center 128.32,154.2,103.95 radius 4.1999
> volume erase #17 center 133.48,156.24,105.08 radius 4.1999
> volume erase #17 center 130.35,154.74,106.59 radius 4.1999
> volume erase #17 center 135.37,158.65,105.44 radius 4.1999
> volume erase #17 center 139.68,162.32,101.04 radius 4.1999
> volume erase #17 center 135.7,157.11,100.64 radius 4.1999
> volume erase #17 center 125.34,167.07,102.93 radius 2.6571
> volume erase #17 center 124.62,166.07,106.46 radius 2.6571
> volume erase #17 center 131.05,174.68,107.6 radius 2.6571
> volume erase #17 center 135.47,176.74,108.49 radius 2.6571
> volume erase #17 center 137.47,171.88,124.06 radius 2.6571
> volume erase #17 center 139.51,175.13,121.82 radius 2.6571
> volume erase #17 center 139.26,175.05,121.53 radius 2.6571
> volume erase #17 center 139.82,174.95,121.14 radius 2.6571
> volume erase #17 center 139.92,175.46,121.25 radius 2.6571
> volume erase #17 center 140.17,179.37,125.41 radius 2.6571
> volume erase #17 center 130.27,146.02,125.22 radius 2.6571
> volume erase #17 center 132.72,148.36,124.81 radius 2.6571
> volume erase #17 center 131.1,147.42,128.9 radius 2.6571
> volume erase #17 center 134.39,147.76,130.64 radius 2.6571
> volume erase #17 center 129.6,150.21,120.55 radius 2.6571
> volume erase #17 center 134.29,151.93,119.91 radius 2.6571
> volume erase #17 center 134.82,152.89,118.69 radius 2.6571
> volume erase #17 center 130.95,151.53,119.45 radius 2.6571
> volume erase #17 center 131.57,149.28,121.01 radius 2.6571
> volume erase #17 center 126.45,147.8,119.68 radius 2.6571
> volume erase #17 center 128,147.93,115.97 radius 2.6571
> volume erase #17 center 128.75,153.62,116.37 radius 2.6571
> volume erase #17 center 129.6,154,112.01 radius 2.6571
> volume erase #17 center 126.8,153.42,111.52 radius 2.6571
> volume erase #17 center 131.2,156.1,109.49 radius 2.6571
> volume erase #17 center 130.95,155.28,111.88 radius 2.6571
> volume erase #17 center 133.78,157.87,111.43 radius 2.6571
> volume erase #17 center 133.6,158.21,109.91 radius 2.6571
> volume erase #17 center 135.11,158.66,112.67 radius 2.6571
> volume erase #17 center 135.41,154.61,112.78 radius 2.0571
> volume erase #17 center 133.14,153.02,114.86 radius 2.9999
> volume erase #17 center 130.95,149.82,116.7 radius 2.9999
> volume erase #17 center 133.86,154.01,109.66 radius 2.9999
> volume erase #17 center 138.3,158.79,109.52 radius 2.9999
[had to delete a bunch of the log to fit within ticket limits]
> volume erase #32 center 116.14,141.06,124.37 radius 2.3557
> show #!31 models
> hide #!31 models
> volume #32 level 0.009881
> ui mousemode right "map eraser"
> volume erase #32 center 119.49,144.74,131.27 radius 2.3557
> volume erase #32 center 120.54,147.35,133.89 radius 2.3557
> volume erase #32 center 120.69,147.61,135.17 radius 2.3557
> volume erase #32 center 118.26,156.18,129.32 radius 2.3557
> volume erase #32 center 118.83,155.03,127.95 radius 2.3557
> volume erase #32 center 119.04,155.11,133.04 radius 2.3557
> volume erase #32 center 117.88,154.11,134.52 radius 2.3557
> volume erase #32 center 117.24,154.6,136.92 radius 2.3557
> volume erase #32 center 116.69,160.81,138.19 radius 2.3557
> volume erase #32 center 124.5,145.55,134.25 radius 2.3557
> volume erase #32 center 122.72,143.64,138.5 radius 2.3557
> volume erase #32 center 124.78,146.29,131.17 radius 2.3557
> volume erase #32 center 137.38,153.23,123.98 radius 2.3557
> volume erase #32 center 138.24,153.39,122.35 radius 2.3557
> volume erase #32 center 136.89,151.94,122.8 radius 2.3557
> volume erase #32 center 121.51,158.83,109.58 radius 2.3557
> volume erase #32 center 124.95,161.1,109.52 radius 2.3557
> volume erase #32 center 126.66,160.75,109.17 radius 2.3557
> volume erase #32 center 126.46,159.27,110.89 radius 2.3557
> volume erase #32 center 130.7,161.45,113.1 radius 2.3557
> volume erase #32 center 130.4,162.82,109.8 radius 2.3557
> volume erase #32 center 127.63,162.04,104.84 radius 2.3557
> volume erase #32 center 127.78,161.79,104.09 radius 2.3557
> volume erase #32 center 134.57,165.01,110.21 radius 2.3557
> volume erase #32 center 134.34,165.83,107.51 radius 2.3557
> volume erase #32 center 135.1,167.22,103.25 radius 2.3557
> volume erase #32 center 139.53,170.2,111.69 radius 2.3557
> volume erase #32 center 140.15,171.2,110.93 radius 2.3557
> volume erase #32 center 138.87,166.31,115.2 radius 2.3557
> volume erase #32 center 138.48,163.54,119.52 radius 2.3557
> volume erase #32 center 141.13,164.13,125 radius 2.3557
> volume erase #32 center 143.66,162.67,129.06 radius 2.3557
> show #!31 models
> volume #31 level 0.007718
> volume #31 level 0.006122
> volume #31 level 0.007262
> volume #31 level 0.007718
> hide #!31 models
> color #32 darkgrey models transparency 0
> volume #32 level 0.007465
> show #!31 models
> volume #31 level 0.006122
> save "/Users/edk4001/Desktop/apo and propofol structure figures v69.cxs"
> open /Users/edk4001/Desktop/HCN1_21oct22_j302_run_class001.mrc
Opened HCN1_21oct22_j302_run_class001.mrc as #33, grid size 256,256,256, pixel
1.08, shown at level 0.0066, step 1, values float32
> hide #!31 models
> hide #!32 models
> volume #33 level 0.007361
> volume #33 level 0.008762
> show #!3 models
> hide #!3 models
> show #!19 models
> ui tool show "Fit in Map"
> save "/Users/edk4001/Desktop/apo and propofol structure figures v70.cxs"
Fit map HCN1_21oct22_j302_run_class001.mrc in map
HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc using 85063 points
correlation = 0.6822, correlation about mean = 0.349, overlap = 198
steps = 252, shift = 3.66, angle = 39.4 degrees
Position of HCN1_21oct22_j302_run_class001.mrc (#33) relative to
HCN1_20oct19_j252_run_ct17_class001_emhighRes.mrc (#19) coordinates:
Matrix rotation and translation
0.77236065 0.63518415 -0.00033677 -53.49515550
-0.63518424 0.77236057 -0.00036288 121.46184057
0.00002961 0.00049418 0.99999988 -0.35355828
Axis 0.00067466 -0.00028840 -0.99999973
Axis point 142.71048573 135.36525973 0.00000000
Rotation angle (degrees) 39.43365994
Shift along axis 0.28243725
> hide #!33 models
> hide #!19 models
> show #!32 models
> hide #!32 models
> show #!31 models
> show #!32 models
> hide #!31 models
> hide #!32 models
> close #33
> show #!5 models
> ui mousemode right "map eraser"
> volume #5 level 0.005688
> open /Users/edk4001/Desktop/HCN1_21oct22_j302_run_class001.mrc
Opened HCN1_21oct22_j302_run_class001.mrc as #33, grid size 256,256,256, pixel
1.08, shown at level 0.00647, step 1, values float32
> volume #33 level 0.006531
> hide #!5 models
> volume #33 level 0.006875
> volume #33 level 0.006531
> volume #33 level 0.007676
> close #33
> show #!5 models
> volume erase #5 center 141.4,134.38,179.18 radius 39.632
Opened HCN1_21july08_j232_postprocess.mrc copy as #33, grid size 340,340,340,
pixel 0.815, shown at step 1, values float32
> surface dust #33 size 8.15
> volume erase #33 center 139.79,150.15,188.52 radius 39.632
> show #!32 models
> hide #!33 models
> show #!31 models
> hide #!31 models
> volume erase #32 center 139.29,97.843,116.48 radius 2.2172
> volume erase #32 center 138.97,102.78,111.47 radius 2.2172
> volume erase #32 center 143.42,109.56,118.84 radius 2.2172
> volume erase #32 center 142.76,107.69,114.9 radius 2.2172
> volume erase #32 center 139.32,109.29,111.08 radius 2.2172
> volume erase #32 center 141.2,111.91,113.35 radius 2.2172
> volume erase #32 center 142.11,106.65,106.42 radius 2.2172
> volume erase #32 center 141.45,117.3,117.78 radius 2.2172
> volume erase #32 center 139.51,117.05,123.4 radius 2.2172
> volume erase #32 center 138.24,117.36,128.92 radius 2.2172
> volume erase #32 center 141.97,117.64,132.33 radius 2.2172
> volume erase #32 center 147.93,114.63,139.35 radius 2.2172
> volume erase #32 center 150.65,122.83,139.56 radius 2.2172
> volume erase #32 center 151.74,123.96,141.03 radius 2.2172
> volume erase #32 center 150.52,123.83,144.83 radius 2.2172
> hide #!32 models
> show #!33 models
> volume erase #33 center 97.014,133.78,180.16 radius 9.0072
> volume erase #33 center 184.4,145.87,176.66 radius 9.0072
> save "/Users/edk4001/Desktop/apo and propofol structure figures v71.cxs"
> volume erase #33 center 103.73,158.05,140.68 radius 9.0072
> volume erase #33 center 104.3,159.32,139.46 radius 9.0072
> volume erase #33 center 109.64,161.85,145.38 radius 9.0072
> volume erase #33 center 106.98,157.43,130.16 radius 9.0072
> volume erase #33 center 123.04,158.93,134 radius 9.0072
> volume erase #33 center 117.93,157.56,151.29 radius 9.0072
> volume erase #33 center 101.65,147.25,151.48 radius 17.322
> volume erase #33 center 98.498,145.08,142.13 radius 17.322
> volume erase #33 center 106.38,147.19,115.94 radius 17.322
> volume erase #33 center 108.87,153.11,102.78 radius 17.322
> volume erase #33 center 99.806,151.26,104.07 radius 17.322
> volume erase #33 center 104.52,165.91,96.198 radius 17.322
> volume erase #33 center 129.68,108.01,140.79 radius 17.322
> volume erase #33 center 117.93,104.8,155.71 radius 17.322
> volume erase #33 center 128.72,105.58,111.98 radius 17.322
> volume erase #33 center 123.21,115.05,99.616 radius 17.322
> volume erase #33 center 113.35,101.27,99.679 radius 17.322
> volume erase #33 center 131.8,95.625,144.27 radius 17.322
> volume erase #33 center 140.99,109.27,141.58 radius 17.322
> volume erase #33 center 173.23,127.97,145.98 radius 17.322
> volume erase #33 center 179.45,131.05,130.7 radius 17.322
> volume erase #33 center 188.42,135.02,134.84 radius 17.322
> volume erase #33 center 150.1,129.44,127.49 radius 17.322
> volume erase #33 center 160.43,141.94,145.42 radius 17.322
> volume erase #33 center 179.22,133.9,167.08 radius 17.322
> volume erase #33 center 154.37,177.22,142.88 radius 17.322
> volume erase #33 center 157.5,170.38,156.25 radius 17.322
> volume erase #33 center 140.19,180.49,147.69 radius 17.322
> volume erase #33 center 144.58,187.71,138.36 radius 17.322
> volume erase #33 center 148.58,178.68,123.63 radius 17.322
> volume erase #33 center 158.38,178.61,109.42 radius 17.322
> volume erase #33 center 144.38,157.52,130.15 radius 17.322
> volume erase #33 center 146.18,157.79,137.32 radius 17.322
> volume erase #33 center 137.68,161.5,154.63 radius 17.322
> volume erase #33 center 125.55,141.94,143.51 radius 17.322
> volume erase #33 center 121.94,139.83,146.16 radius 17.322
> volume erase #33 center 133.07,137.37,122.1 radius 17.322
> volume erase #33 center 132.49,156.37,107.56 radius 17.322
> volume erase #33 center 131.17,151.93,110.81 radius 17.322
> volume erase #33 center 126.72,139.32,108.42 radius 17.322
> volume erase #33 center 121.68,138.94,108.07 radius 17.322
> volume erase #33 center 143.64,122.76,118.67 radius 17.322
> volume erase #33 center 150.96,125.56,104.27 radius 17.322
> volume erase #33 center 147.59,127.28,102.31 radius 17.322
> volume erase #33 center 151.26,164.35,100.22 radius 17.322
> volume erase #33 center 163.91,145.59,108.69 radius 17.322
> volume erase #33 center 180.02,126.13,110.46 radius 17.322
> volume erase #33 center 184.19,122.63,104.42 radius 17.322
> show #!32 models
> hide #!32 models
> hide #!33 models
> show #!5 models
> volume #33 level 0.006275
> volume #33 level 0.005541
> volume #5 level 0.007671
> volume #5 level 0.008663
> volume erase #5 center 143.33,140.51,170.39 radius 43.928
Opened HCN1_21july08_j232_postprocess.mrc copy as #34, grid size 340,340,340,
pixel 0.815, shown at step 1, values float32
> surface dust #34 size 8.15
> volume erase #34 center 164.22,134.99,125.98 radius 9.8387
> volume erase #34 center 160.72,132.17,125.9 radius 9.8387
[Repeated 1 time(s)]
> volume erase #34 center 153.12,132.75,129.71 radius 9.8387
> volume erase #34 center 146.17,153.62,118.56 radius 9.8387
> close #34
> show #!5 models
> volume erase #5 center 138.61,140.78,167.01 radius 41.849
Opened HCN1_21july08_j232_postprocess.mrc copy as #34, grid size 340,340,340,
pixel 0.815, shown at step 1, values float32
> surface dust #34 size 8.15
> volume erase #34 center 174.48,124.7,146.71 radius 25.913
> volume erase #34 center 149.3,171.42,148.68 radius 25.913
> volume erase #34 center 104.8,150.82,147.37 radius 25.913
> volume erase #34 center 127.65,107.81,145.78 radius 25.913
> volume erase #34 center 141.58,120.02,125.85 radius 5.2658
> volume erase #34 center 150.41,131.51,122.84 radius 5.2658
> volume erase #34 center 148.37,128.62,115.94 radius 5.2658
> volume erase #34 center 142.6,123.34,113.14 radius 5.2658
> volume erase #34 center 148.24,119.4,114.33 radius 5.2658
> volume erase #34 center 134.92,122.73,122.6 radius 5.2658
> volume erase #34 center 135.06,124.92,124.41 radius 5.2658
> volume erase #34 center 136.45,127.73,127.01 radius 5.2658
> volume erase #34 center 132.5,131.55,120.31 radius 5.2658
> volume erase #34 center 122.26,142.12,126.38 radius 5.2658
> volume erase #34 center 119.22,141.01,121.28 radius 5.2658
> volume erase #34 center 121.37,140.71,113.93 radius 5.2658
> volume erase #34 center 123.43,134.94,113.26 radius 5.2658
> volume erase #34 center 128.63,151.47,120.11 radius 5.2658
> volume erase #34 center 131.25,153.82,116.92 radius 5.2658
> volume erase #34 center 141.67,161.42,122 radius 5.2658
> volume erase #34 center 142.56,158.73,126.54 radius 5.2658
> volume erase #34 center 140.57,158.79,114.48 radius 5.2658
> volume erase #34 center 149.68,150.1,119.89 radius 5.2658
> volume erase #34 center 149.31,150.6,121.95 radius 5.2658
> volume erase #34 center 150.91,148.18,115.18 radius 5.2658
> volume erase #34 center 157.68,144.36,114.55 radius 5.2658
> volume erase #34 center 159.96,149.77,110.92 radius 5.2658
> volume erase #34 center 163.24,145.68,111.54 radius 5.2658
> volume erase #34 center 158.97,138.74,125.39 radius 5.2658
> volume erase #34 center 158.48,135.73,117.1 radius 5.2658
> volume erase #34 center 172.86,126.88,111.86 radius 22.587
> volume erase #34 center 124.03,109.33,112.57 radius 22.587
> volume erase #34 center 110.22,155.64,112.63 radius 22.587
> volume erase #34 center 113.33,136.63,119.86 radius 6.6515
> volume erase #34 center 112.68,134.81,113.46 radius 6.6515
> volume erase #34 center 153.86,176.76,106.58 radius 27.16
> volume erase #34 center 145.05,153.53,120.77 radius 3.3257
> volume erase #34 center 141.04,151.81,126.76 radius 3.3257
> volume erase #34 center 142.82,151.69,125.67 radius 3.3257
> volume erase #34 center 143.47,150.21,116.28 radius 3.3257
> volume erase #34 center 139.43,147,116.55 radius 3.3257
> volume erase #34 center 139.39,153.67,114.38 radius 3.3257
> volume erase #34 center 133.58,154.21,110.65 radius 3.3257
> volume erase #34 center 135.23,149.68,113.52 radius 3.3257
> volume erase #34 center 131.19,147.38,124.08 radius 3.3257
> volume erase #34 center 129.4,144.52,120.64 radius 3.3257
> volume erase #34 center 129.74,145.53,114.88 radius 3.3257
> volume erase #34 center 132.6,138,116.05 radius 3.3257
> volume erase #34 center 128.57,138.4,113.29 radius 3.3257
> save "/Users/edk4001/Desktop/apo and propofol structure figures v72.cxs"
> volume erase #34 center 141.53,139.53,84.79 radius 32.98
> volume erase #34 center 136.32,130.03,119.79 radius 3.3257
> volume erase #34 center 136.05,127.98,122.38 radius 3.3257
> volume erase #34 center 139.91,132.14,122.84 radius 3.3257
> volume erase #34 center 136.47,129.75,122.41 radius 3.3257
> volume erase #34 center 137.91,131.6,121.4 radius 3.3257
> volume erase #34 center 139.92,133.91,118.36 radius 3.3257
> volume erase #34 center 129.24,141.75,126.74 radius 3.3257
> volume erase #34 center 132.77,140.8,123.33 radius 3.3257
> volume erase #34 center 131.72,142.47,121.72 radius 3.3257
> volume erase #34 center 131.31,142.56,121.49 radius 3.3257
> volume erase #34 center 140.21,147.73,123.7 radius 3.3257
> volume erase #34 center 143.28,149.89,120.9 radius 3.3257
> volume erase #34 center 147.64,139.4,123.56 radius 3.3257
> volume erase #34 center 150.88,136.9,119.88 radius 3.3257
> volume erase #34 center 140.88,139.46,120.82 radius 6.6515
> show #!33 models
> volume #33 level 0.006128
> hide #!33 models
> hide #!34 models
> hide #!32 models
> show #!5 models
> volume #5 level 0.007671
> volume #5 level 0.006928
> volume #5 level 0.005688
> volume #5 level 0.00668
> volume #5 level 0.007175
> volume #5 level 0.006184
> volume erase #5 center 137.96,136.89,189.54 radius 51.965
Opened HCN1_21july08_j232_postprocess.mrc copy as #35, grid size 340,340,340,
pixel 0.815, shown at step 1, values float32
> surface dust #35 size 8.15
> volume erase #35 center 138.77,104.23,139.82 radius 13.996
> volume erase #35 center 127.47,98.869,142.3 radius 13.996
> volume erase #35 center 130.24,95.955,145.87 radius 13.996
> volume erase #35 center 173.05,117.33,138.62 radius 13.996
> volume erase #35 center 186.4,127.73,145.14 radius 13.996
> volume erase #35 center 175.87,140.65,147.34 radius 13.996
> volume erase #35 center 171.47,143.23,141.93 radius 13.996
> volume erase #35 center 158.69,171.4,138.49 radius 13.996
> volume erase #35 center 149.15,182.18,143.33 radius 13.996
> volume erase #35 center 148.29,185.99,145.03 radius 13.996
> volume erase #35 center 137.92,177.87,148.61 radius 13.996
> volume erase #35 center 137.66,173.76,140.7 radius 13.996
> volume erase #35 center 105.1,162.55,139.67 radius 13.996
> volume erase #35 center 98.449,151.49,145.82 radius 13.996
> volume erase #35 center 99.183,140.92,141.07 radius 13.996
> volume erase #35 center 108.21,141.36,138.94 radius 13.996
> volume erase #35 center 125.59,108.36,137.68 radius 13.996
> volume erase #35 center 121.08,108.3,140.16 radius 13.996
> volume erase #35 center 149.47,125.32,138.91 radius 6.0972
> volume erase #35 center 143.38,121.07,135.14 radius 6.0972
> volume erase #35 center 142.75,130.07,133.37 radius 6.0972
> volume erase #35 center 143.97,129.33,127.66 radius 6.0972
> volume erase #35 center 151.8,128.28,120.8 radius 6.0972
> volume erase #35 center 145.85,137.22,129.59 radius 6.0972
> volume erase #35 center 143.82,136.93,135.14 radius 6.0972
> volume erase #35 center 148.28,138,122.84 radius 6.0972
> volume erase #35 center 159.48,136.73,120.45 radius 6.0972
> volume erase #35 center 159.66,138.78,124.68 radius 6.0972
> volume erase #35 center 165.87,130.03,130.66 radius 6.0972
> volume erase #35 center 175.98,130.96,127.84 radius 6.0972
> volume erase #35 center 180.68,131.22,126.68 radius 6.0972
> volume erase #35 center 175.26,138.92,125.41 radius 6.0972
> volume erase #35 center 175.73,128.19,111.55 radius 18.43
> volume erase #35 center 175.3,119.73,111.11 radius 18.43
> volume erase #35 center 149.54,147.15,126.44 radius 3.6029
> volume erase #35 center 150.91,152.9,122.97 radius 3.6029
> volume erase #35 center 153.61,146.51,124.06 radius 3.6029
> volume erase #35 center 152.71,150.92,139.16 radius 3.6029
> volume erase #35 center 156.73,148.41,139.92 radius 3.6029
> volume erase #35 center 153.33,147.14,135 radius 3.6029
> volume erase #35 center 152.89,145.79,130.85 radius 3.6029
> volume erase #35 center 151.06,140.8,129.31 radius 3.6029
> volume erase #35 center 155.93,143.12,135.97 radius 3.6029
> volume erase #35 center 158.96,143.42,133.15 radius 3.6029
> volume erase #35 center 158.08,145.76,132.27 radius 3.6029
> volume erase #35 center 143.63,141.77,65.972 radius 59.171
> volume erase #35 center 126.04,99.562,110.67 radius 22.587
> volume erase #35 center 97.56,158.66,112.78 radius 22.587
> volume erase #35 center 96.453,127.76,106.52 radius 22.587
> volume erase #35 center 153.1,177.32,113.61 radius 22.587
> volume erase #35 center 153.85,160.42,131.3 radius 4.1572
> volume erase #35 center 153.81,160.07,132.72 radius 4.1572
> volume erase #35 center 153.65,159.68,134.02 radius 4.1572
> save "/Users/edk4001/Desktop/apo and propofol structure figures v73.cxs"
——— End of log from Sun Jan 30 00:33:51 2022 ———
opened ChimeraX session
> ui mousemode right "map eraser"
> volume erase #35 center 156.91,129.66,137.97 radius 3.6901
> volume erase #35 center 161.07,129.63,135.73 radius 3.6901
> volume erase #35 center 160.43,130.21,131.92 radius 3.6901
> volume erase #35 center 159.83,129.61,126.85 radius 3.6901
> volume erase #35 center 159.77,133.72,132.12 radius 3.6901
> volume erase #35 center 151.83,133.77,126.38 radius 3.6901
> volume erase #35 center 157.61,134.03,129.75 radius 3.6901
> volume erase #35 center 158.88,136.33,136.79 radius 3.6901
> volume erase #35 center 156.44,137.42,137.37 radius 3.6901
> volume erase #35 center 156.68,139.43,132.88 radius 3.6901
> volume erase #35 center 149.27,156.53,139.26 radius 3.6901
> volume erase #35 center 146.04,160.19,134.67 radius 3.6901
> volume erase #35 center 147.32,157.24,131.47 radius 3.6901
> volume erase #35 center 148.32,152.92,125.6 radius 3.6901
> volume erase #35 center 145.14,147.89,126.96 radius 3.6901
> volume erase #35 center 145.15,144.43,126.47 radius 3.6901
> volume erase #35 center 143.64,157.85,125.65 radius 3.6901
> volume erase #35 center 143.99,156.15,125.65 radius 3.6901
> volume erase #35 center 141.59,161.38,129.44 radius 3.6901
> volume erase #35 center 141.52,158.4,128.93 radius 3.6901
> volume erase #35 center 139.97,157.6,127.63 radius 3.6901
> volume erase #35 center 142.27,157.21,134.32 radius 3.6901
> volume erase #35 center 142.87,156.13,138.6 radius 3.6901
> volume erase #35 center 141.31,151.98,127.29 radius 3.6901
> volume erase #35 center 147.92,146.14,137.87 radius 3.6901
> volume erase #35 center 148.08,142.77,134.44 radius 3.6901
> volume erase #35 center 148.24,142.14,137.26 radius 3.6901
> volume erase #35 center 146.32,145.99,136.42 radius 3.6901
> volume erase #35 center 117.87,155.43,133.25 radius 3.6901
> volume erase #35 center 116.18,153.85,125.83 radius 3.6901
> volume erase #35 center 121.49,153.97,130.69 radius 3.6901
> volume erase #35 center 121.1,153.96,132.9 radius 3.6901
> volume erase #35 center 122.2,153.68,124.64 radius 3.6901
> volume erase #35 center 122.51,152.16,134.82 radius 2.4601
> volume erase #35 center 128.12,153.8,137.16 radius 2.4601
> volume erase #35 center 130.42,156.39,139.13 radius 2.4601
> volume erase #35 center 131.75,154.49,132.58 radius 2.4601
> volume erase #35 center 135.24,157.88,132.77 radius 2.4601
> volume erase #35 center 136.13,159.88,129.13 radius 2.4601
> volume erase #35 center 139.04,158.8,137.81 radius 2.4601
> volume erase #35 center 136.07,156.27,137.16 radius 2.4601
> volume erase #35 center 137.09,153.66,138.65 radius 2.4601
> volume erase #35 center 139.89,150.55,138.26 radius 2.4601
> volume erase #35 center 137.27,152.91,132.84 radius 2.4601
> volume erase #35 center 134.28,153.39,128.62 radius 2.4601
> volume erase #35 center 138.22,152.77,136.69 radius 2.4601
> volume erase #35 center 134.33,150.53,136.56 radius 2.4601
> volume erase #35 center 135.97,148.61,128.69 radius 2.4601
> volume erase #35 center 137.71,148.48,127.51 radius 2.4601
> volume erase #35 center 133.19,148.33,131.37 radius 2.4601
> volume erase #35 center 125.04,149.28,138.55 radius 2.4601
> volume erase #35 center 122.29,148.85,139.1 radius 2.4601
> volume erase #35 center 122.6,145.41,136.59 radius 2.4601
> volume erase #35 center 120.56,146.92,134.79 radius 2.4601
> volume erase #35 center 128.23,148.28,127.42 radius 2.4601
> volume erase #35 center 124.23,146.9,129.81 radius 2.4601
> volume erase #35 center 125.1,146.52,127.12 radius 2.4601
> volume erase #35 center 132.87,145.86,128.92 radius 2.4601
> volume erase #35 center 134.98,144.66,127.17 radius 2.4601
> volume erase #35 center 130.8,146.99,124.91 radius 2.4601
> volume erase #35 center 131.23,144.38,124.22 radius 2.4601
> volume erase #35 center 128.14,144.72,125.15 radius 2.4601
> volume erase #35 center 114.14,150.77,126.73 radius 2.4601
> volume erase #35 center 119.21,145.47,121.73 radius 6.1502
> volume erase #35 center 120.93,140.89,127.32 radius 6.1502
> volume erase #35 center 120.42,142.18,129.66 radius 6.1502
> save "/Users/edk4001/Desktop/apo and propofol structure figures v74.cxs"
> volume erase #35 center 124.9,143.55,133.82 radius 1.8183
> volume erase #35 center 124.67,140.95,136.54 radius 1.8183
> volume erase #35 center 125.09,138.6,132.38 radius 1.8183
> volume erase #35 center 126.51,139.19,134.66 radius 1.8183
> volume erase #35 center 125.56,137.59,137.12 radius 1.8183
> volume erase #35 center 124.53,134.68,137.37 radius 1.8183
> volume erase #35 center 132.11,142.61,137.23 radius 1.8183
> volume erase #35 center 135.03,147.53,137.7 radius 1.8183
> volume erase #35 center 138.84,146.71,137.69 radius 1.8183
> volume erase #35 center 140.62,145.08,136.9 radius 1.8183
> volume erase #35 center 132.06,140.49,128.61 radius 1.8183
> volume erase #35 center 132.85,136.71,127.52 radius 1.8183
> volume erase #35 center 129.41,137.58,127.58 radius 1.8183
> volume erase #35 center 139.53,147.04,132.78 radius 5.5084
> volume erase #35 center 135.97,138.54,132.05 radius 5.5084
> volume erase #35 center 127.35,135.46,136.57 radius 5.5084
> volume erase #35 center 124.15,130.64,138.84 radius 5.5084
> volume erase #35 center 129.33,137.75,125.44 radius 5.5084
> volume erase #35 center 130.11,124.62,141.38 radius 5.5084
> volume erase #35 center 130.43,117.88,133.05 radius 5.5084
> volume erase #35 center 133.81,128.67,124.76 radius 5.5084
> volume erase #35 center 135.46,121.63,129.81 radius 5.5084
> volume erase #35 center 138.18,120.87,122.17 radius 5.5084
> volume erase #35 center 127.99,121.27,121.77 radius 5.5084
> volume erase #35 center 134.86,135.17,127.86 radius 5.5084
> volume erase #35 center 137.21,122.51,138.93 radius 5.5084
> volume erase #35 center 133.07,135.88,139.59 radius 5.5084
> save "/Users/edk4001/Desktop/apo and propofol structure figures v75.cxs"
——— End of log from Sun Jan 30 01:09:36 2022 ———
opened ChimeraX session
> ui mousemode right "map eraser"
> volume #35 level 0.006008
> volume erase #35 center 128.73,144.87,132.77 radius 1.1059
> volume erase #35 center 127,143.27,129.64 radius 1.1059
> volume erase #35 center 127,143.27,129.64 radius 1.4745
> volume erase #35 center 127.63,142.75,128.72 radius 1.4745
> volume erase #35 center 128.71,152.95,123.44 radius 1.4745
> volume erase #35 center 128.53,150.65,123.85 radius 1.4745
> volume erase #35 center 135.43,153.44,124.05 radius 1.4745
> volume erase #35 center 131.68,153.78,124.02 radius 1.4745
> volume erase #35 center 128.18,132.41,130.14 radius 1.4745
> volume erase #35 center 126.49,131.01,122.15 radius 1.4745
> volume erase #35 center 127.37,130.2,123.78 radius 1.4745
> volume erase #35 center 136.05,129.38,133.09 radius 1.4745
> volume erase #35 center 143.7,119.18,127.28 radius 1.4745
> volume erase #35 center 151.17,136.45,133.08 radius 1.4745
> volume erase #35 center 151.42,136.31,132.84 radius 1.4745
> volume erase #35 center 163.05,140.69,129.78 radius 1.4745
> volume erase #35 center 147.16,148.64,130.72 radius 1.4745
> volume erase #35 center 144.88,153.08,129.43 radius 1.4745
> volume erase #35 center 144.48,151.5,132.76 radius 1.4745
> volume erase #35 center 150.42,113.74,141.74 radius 1.4745
> save "/Users/edk4001/Desktop/apo and propofol structure figures v76.cxs"
——— End of log from Sun Jan 30 01:28:28 2022 ———
opened ChimeraX session
> volume #35 level 0.005655
> ui mousemode right "map eraser"
> volume erase #35 center 125.4,126.06,127.42 radius 1.8482
> volume erase #35 center 125.2,127.1,128.26 radius 1.8482
> volume erase #35 center 128.27,124.63,128.94 radius 1.8482
> volume erase #35 center 153.33,125.18,127.06 radius 1.8482
> volume erase #35 center 155.35,128.05,129.54 radius 1.8482
> volume erase #35 center 156.02,153.41,128.64 radius 1.8482
> volume erase #35 center 154.51,155.18,130 radius 1.8482
> volume erase #35 center 152.61,155.68,128.99 radius 1.8482
> volume erase #35 center 153.49,154.67,137.17 radius 1.8482
> volume erase #35 center 152.6,154.73,137.85 radius 1.8482
> volume erase #35 center 151.91,154.67,138.28 radius 1.8482
> volume erase #35 center 125.75,151.89,137.37 radius 1.8482
> volume erase #35 center 126.89,155.27,127.58 radius 1.8482
> volume erase #35 center 125.95,154.16,129.99 radius 1.8482
> volume erase #35 center 125.74,153.16,129.7 radius 1.8482
> volume erase #35 center 118.5,160.81,144.19 radius 8.9331
> volume erase #35 center 81.391,142.95,147.3 radius 8.9331
> volume erase #35 center 80.285,149.79,143.79 radius 8.9331
> volume erase #35 center 166.87,181.41,137.67 radius 8.9331
> volume erase #35 center 163.92,152.61,145.4 radius 8.9331
> volume erase #35 center 166.34,136.11,144.18 radius 8.9331
> volume erase #35 center 181.91,137.23,134.11 radius 8.9331
> volume erase #35 center 195.34,141.48,138.47 radius 8.9331
> volume erase #35 center 184.1,132.12,160.88 radius 8.9331
> volume erase #35 center 188.2,121.17,136.42 radius 8.9331
> volume erase #35 center 142.1,85.848,140.56 radius 8.9331
> volume erase #35 center 116.25,139.95,120.58 radius 8.9331
> save "/Users/edk4001/Desktop/apo and propofol structure figures v77.cxs"
> volume #35 level 0.005655
> show #!34 models
> show #!33 models
> show #!32 models
> volume #35 level 0.00636
> volume #35 level 0.005655
> hide #!32 models
> hide #!33 models
> hide #!34 models
> hide #!35 models
> show #!32 models
> show #!31 models
> hide #!32 models
> ui mousemode right "map eraser"
> volume erase #31 center 111.25,111.84,133.85 radius 4.9774
> volume erase #31 center 111.9,170.27,136.71 radius 4.9774
> volume erase #31 center 172.42,170.02,134.98 radius 4.9774
> volume erase #31 center 169.8,167.86,135.1 radius 4.9774
> volume erase #31 center 169.61,109.59,133.65 radius 4.9774
> volume #31 level 0.006964
> volume erase #31 center 169.47,150.02,112.89 radius 4.9774
> volume erase #31 center 151.43,110.49,113.37 radius 4.9774
> volume erase #31 center 149.61,109.46,113.58 radius 4.9774
> volume erase #31 center 111.63,130.04,114.26 radius 4.9774
> volume erase #31 center 129.15,170,113.22 radius 4.9774
> volume erase #31 center 131.2,170.97,113.87 radius 4.9774
> save "/Users/edk4001/Desktop/apo and propofol structure figures v78.cxs"
> volume erase #31 center 127.01,134.16,124.74 radius 2.8716
> volume erase #31 center 134.57,153.8,125.16 radius 2.8716
> volume erase #31 center 153.8,145.93,125.58 radius 2.8716
> volume erase #31 center 143.81,127.3,122.93 radius 2.8716
> show #!32 models
> show #!33 models
> show #!34 models
> show #!35 models
> hide #!35 models
> hide #!34 models
> hide #!33 models
> hide #!32 models
> volume erase #31 center 130.44,128.24,131.95 radius 2.7715
> volume erase #31 center 131.65,129.69,129.13 radius 2.7715
> volume erase #31 center 132.7,129.22,131.15 radius 2.7715
> show #!32 models
> show #!33 models
> show #!34 models
> show #!35 models
> hide #!31 models
> hide #!32 models
> hide #!34 models
> hide #!35 models
> save "/Users/edk4001/Desktop/apo and propofol structure figures v79.cxs"
> volume erase #33 center 111.11,104.8,131.41 radius 2.7715
> show #!31 models
> show #!32 models
> show #!34 models
> show #!35 models
> hide #!31 models
> hide #!32 models
> hide #!33 models
> hide #!34 models
> hide #!35 models
> show #!30 models
> show #!29 models
> show #!28 models
> show #!27 models
> show #!25 models
> show #!26 models
> hide #!27 models
> show #!27 models
> hide #!26 models
> hide #!25 models
> hide #!27 models
> hide #!28 models
> hide #!29 models
> hide #!30 models
> show #!25 models
> hide #!25 models
> show #!31 models
> show #!32 models
> show #!33 models
> show #!34 models
> show #!35 models
> turn x -1 90
> turn x 1 90
[Repeated 1 time(s)]
> turn x -1 90
> color #33 #ff7e79 models transparency 0
> color #34 #ff7e79 models transparency 0
> color #35 #ff7e79 models transparency 0
> hide #!31 models
> hide #!32 models
> hide #!33 models
> hide #!34 models
> hide #!35 models
> show #!4 models
> color #4 darkgrey models transparency 0
> turn x 1 90
> turn x -1 90
> turn x 1 90
> volume #4 level 0.00398
> volume #4 level 0.00389
> volume #4 level 0.0038
> volume #4 level 0.0039
> volume #4 level 0.00394
> volume #4 level 0.00398
> volume #4 level 0.00392
> save /Users/edk4001/Desktop/image81.png supersample 3
> volume #4 level 0.00391
> volume #4 level 0.00393
> save /Users/edk4001/Desktop/image82.png supersample 3
> volume #4 level 0.00394
> save /Users/edk4001/Desktop/image83.png supersample 3
> volume #4 level 0.00395
> save /Users/edk4001/Desktop/image84.png supersample 3
> volume #4 level 0.00396
> save /Users/edk4001/Desktop/image85.png supersample 3
> volume #4 level 0.00397
> save /Users/edk4001/Desktop/image86.png supersample 3
> volume #4 level 0.00398
> save /Users/edk4001/Desktop/image87.png supersample 3
> volume #4 level 0.0039
> volume #4 level 0.00392
> save /Users/edk4001/Desktop/image81.png supersample 3
> volume #4 level 0.003922
> save /Users/edk4001/Desktop/image82.png supersample 3
> volume #4 level 0.003924
> save /Users/edk4001/Desktop/image83.png supersample 3
> volume #4 level 0.003926
> save /Users/edk4001/Desktop/image84.png supersample 3
> volume #4 level 0.003928
> save /Users/edk4001/Desktop/image85.png supersample 3
> volume #4 level 0.00393
> save /Users/edk4001/Desktop/image86.png supersample 3
> volume #4 level 0.003932
> save /Users/edk4001/Desktop/image87.png supersample 3
> volume #4 level 0.003934
> save /Users/edk4001/Desktop/image88.png supersample 3
> volume #4 level 0.003936
> save /Users/edk4001/Desktop/image89.png supersample 3
> volume #4 level 0.003938
> save /Users/edk4001/Desktop/image90.png supersample 3
> volume #4 level 0.00394
> save /Users/edk4001/Desktop/image91.png supersample 3
> volume #4 level 0.003942
> save /Users/edk4001/Desktop/image92.png supersample 3
> volume #4 level 0.003944
> save /Users/edk4001/Desktop/image93.png supersample 3
> volume #4 level 0.003946
> save /Users/edk4001/Desktop/image94.png supersample 3
> volume #4 level 0.003948
> save /Users/edk4001/Desktop/image95.png supersample 3
> volume #4 level 0.00395
> save /Users/edk4001/Desktop/image96.png supersample 3
> volume #4 level 0.003952
> save /Users/edk4001/Desktop/image97.png supersample 3
> volume #4 level 0.003954
> save /Users/edk4001/Desktop/image98.png supersample 3
> volume #4 level 0.003956
> save /Users/edk4001/Desktop/image99.png supersample 3
> volume #4 level 0.003958
> save /Users/edk4001/Desktop/image100.png supersample 3
> volume #4 level 0.00396
> save /Users/edk4001/Desktop/image101.png supersample 3
> volume #4 level 0.003962
> save /Users/edk4001/Desktop/image102.png supersample 3
> volume #4 level 0.003964
> save /Users/edk4001/Desktop/image103.png supersample 3
> volume #4 level 0.003966
> save /Users/edk4001/Desktop/image104.png supersample 3
> volume #4 level 0.003968
> save /Users/edk4001/Desktop/image105.png supersample 3
> volume #4 level 0.00397
> save /Users/edk4001/Desktop/image106.png supersample 3
> volume #4 level 0.003972
> save /Users/edk4001/Desktop/image107.png supersample 3
> volume #4 level 0.003974
> save /Users/edk4001/Desktop/image108.png supersample 3
> volume #4 level 0.003976
> save /Users/edk4001/Desktop/image109.png supersample 3
> volume #4 level 0.003978
> save /Users/edk4001/Desktop/image110.png supersample 3
> volume #4 level 0.00398
> save /Users/edk4001/Desktop/image111.png supersample 3
> turn x 1 90
> turn x -1 90
> volume #4 level 0.003982
> save /Users/edk4001/Desktop/image112.png supersample 3
> volume #4 level 0.003984
> save /Users/edk4001/Desktop/image113.png supersample 3
> volume #4 level 0.003986
> save /Users/edk4001/Desktop/image114.png supersample 3
> volume #4 level 0.003988
> save /Users/edk4001/Desktop/image115.png supersample 3
> volume #4 level 0.00399
> save /Users/edk4001/Desktop/image116.png supersample 3
> turn x -1 90
> turn x 1 90
[Repeated 1 time(s)]
> turn x -1 90
> movie record
> turn x 1 90
> wait 30
> movie encode /Users/edk4001/Desktop/movie2.mp4
Movie saved to /Users/edk4001/Desktop/movie2.mp4
> turn x -1 90
> movie record
> turn x -1 90
> wait 30
> movie encode /Users/edk4001/Desktop/movie2.mp4
Movie saved to /Users/edk4001/Desktop/movie2.mp4
> hide #!4 models
> show #!4 models
> save /Users/edk4001/Desktop/image117.png supersample 3
> hide #!4 models
> show #!27 models
> show #!20 models
> show #!28 models
> show #!29 models
> show #!30 models
> show #!25 models
> save /Users/edk4001/Desktop/image118.png supersample 3
> hide #!20 models
> save /Users/edk4001/Desktop/image119.png supersample 3
> hide #!27 models
> hide #!25 models
> hide #!28 models
> hide #!29 models
> hide #!30 models
> show #!32 models
> show #!31 models
> show #!33 models
> show #!34 models
> show #!35 models
> save /Users/edk4001/Desktop/image120.png supersample 3
> hide #!31 models
> hide #!32 models
> hide #!33 models
> hide #!34 models
> hide #!35 models
> show #!23 models
> hide #!23 models
> show #!25 models
> show #!26 models
> show #!28 models
> show #!29 models
> show #!30 models
> save /Users/edk4001/Desktop/image121.png supersample 3
> movie record
> turn y -1 360
> movie encode /Users/edk4001/Desktop/movie2.mp4
Movie encoding failed because no images were recorded.
> movie record
> turn y -1 360
> wait 30
> movie encode /Users/edk4001/Desktop/movie2.mp4
Movie saved to /Users/edk4001/Desktop/movie2.mp4
> hide #!30 models
> hide #!29 models
> hide #!28 models
> hide #!26 models
> hide #!25 models
> show #!3 models
> hide #!3 models
> show #!4 models
> turn x -1 90
> turn x 1 90
[Repeated 1 time(s)]
> movie record
> turn x -1 90
> wait 30
> movie encode /Users/edk4001/Desktop/movie3.mp4
Movie saved to /Users/edk4001/Desktop/movie3.mp4
> turn x -1 90
> turn x 1 90
[Repeated 1 time(s)]
> movie record
> turn x -1 90
> wait 90
> movie encode /Users/edk4001/Desktop/movie3.mp4
Movie saved to /Users/edk4001/Desktop/movie3.mp4
> hide #!4 models
> show #!26 models
> show #!25 models
> show #!28 models
> show #!29 models
> show #!30 models
> movie record
> turn y -1 360
> wait 360
> movie encode /Users/edk4001/Desktop/movie2.mp4
Movie saved to /Users/edk4001/Desktop/movie2.mp4
> movie record
> turn y -1 180
> wait 180
> movie encode /Users/edk4001/Desktop/movie4.mp4
Movie saved to /Users/edk4001/Desktop/movie4.mp4
> save "/Users/edk4001/Desktop/apo and propofol structure figures v80.cxs"
——— End of log from Sun Jan 30 12:40:49 2022 ———
opened ChimeraX session
> hide #!25 models
> hide #!26 models
> hide #!30 models
> hide #!29 models
> hide #!28 models
> show #!7 models
> volume #7 level 0.01792
> hide #!7 models
> show #!8 models
> hide #!8 models
> show #!6 models
> hide #!6 models
> show #!14 models
> show #!13 models
> hide #!14 models
> volume #13 level 0.02348
> hide #!13 models
> show #!13 models
> volume #13 level 0.02251
> volume #13 level 0.02187
[Repeated 1 time(s)]
> hide #!13 models
> show #!10 models
> volume #10 level 0.01152
> surface dust #10 size 10.8
> volume #10 level 0.012
> ui mousemode right "map eraser"
> volume erase #10 center 144.85,137.32,189.36 radius 51.188
Opened HCN1_21may10_j77_run_ct14_class001.mrc copy as #36, grid size
256,256,256, pixel 1.08, shown at step 1, values float32
> surface dust #36 size 10.8
> volume erase #36 center 103.79,163.84,138.52 radius 5.3714
> volume erase #36 center 108.04,164.96,139.71 radius 5.3714
> volume erase #36 center 109.93,160.98,134.92 radius 5.3714
> volume erase #36 center 110.41,158.63,132.13 radius 5.3714
> volume erase #36 center 107.26,162.06,127.82 radius 5.3714
> volume erase #36 center 111.08,166.37,105.19 radius 5.3714
> volume erase #36 center 110.91,166.62,101.5 radius 5.3714
> volume erase #36 center 110.96,168.38,100.27 radius 5.3714
> volume erase #36 center 104.5,170.78,98.013 radius 5.3714
> volume erase #36 center 110.9,151.53,129.51 radius 5.3714
> volume erase #36 center 110.82,150.58,133.75 radius 5.3714
> volume erase #36 center 110.81,154.59,122.99 radius 5.3714
> volume erase #36 center 102.21,148.55,105.13 radius 5.3714
> volume erase #36 center 98.998,144.59,109.9 radius 5.3714
> volume erase #36 center 93.875,144.92,105.34 radius 5.3714
> volume erase #36 center 90.121,149.51,111.41 radius 5.3714
> volume erase #36 center 100.91,153.3,108.82 radius 5.3714
> volume #36 level 0.01184
> volume erase #36 center 106.15,144.1,121.73 radius 5.3714
> volume erase #36 center 110.14,143.06,133.01 radius 5.3714
> volume erase #36 center 97.022,145.9,146.11 radius 19.833
> volume erase #36 center 116.17,146.68,135.37 radius 4.2696
> volume erase #36 center 119.54,148.54,134.2 radius 2.0659
> volume erase #36 center 116.34,136.31,143.02 radius 5.6468
> volume erase #36 center 111.08,133.4,141.57 radius 5.6468
> volume erase #36 center 103.39,153.63,124.56 radius 5.6468
> volume erase #36 center 98.318,150.73,120.25 radius 5.6468
> volume erase #36 center 101.58,150.06,115.78 radius 5.6468
> volume erase #36 center 109.29,148.88,116.03 radius 5.6468
> volume erase #36 center 105.91,160.91,109.63 radius 5.6468
> volume erase #36 center 106.55,159.68,113.08 radius 5.6468
> volume erase #36 center 107.08,158.84,114.45 radius 5.6468
> volume erase #36 center 96.915,167.56,109.35 radius 9.641
> volume erase #36 center 112.25,161.35,110.66 radius 3.03
> volume erase #36 center 118.25,146.68,120.4 radius 3.03
> volume erase #36 center 117.62,150.12,117.59 radius 3.03
> volume erase #36 center 118.32,147.29,114.14 radius 3.03
> volume erase #36 center 116.84,146.42,113.25 radius 3.03
> volume erase #36 center 120.25,149.28,114.28 radius 3.03
> volume erase #36 center 121.97,148.36,117.82 radius 3.03
> volume erase #36 center 122.8,144.32,119.92 radius 3.03
> volume erase #36 center 122.13,145.28,124.4 radius 3.03
> volume erase #36 center 122.22,142.34,125.12 radius 3.03
> volume erase #36 center 122.1,136.37,128.9 radius 3.03
> volume erase #36 center 122.55,139.47,129.6 radius 3.03
> save "/Users/edk4001/Desktop/apo and propofol structure figures v81.cxs"
——— End of log from Tue Feb 1 00:26:03 2022 ———
opened ChimeraX session
> ui mousemode right "map eraser"
> volume erase #36 center 124.58,136.89,134.94 radius 2.6812
> volume erase #36 center 123.19,139.87,134.59 radius 2.6812
> volume erase #36 center 123.45,137.65,139 radius 2.6812
> volume erase #36 center 122.32,134.78,139.29 radius 2.6812
> volume erase #36 center 119.75,143.6,138.51 radius 2.6812
> volume erase #36 center 121.21,150.74,140.19 radius 2.6812
> volume erase #36 center 120.36,149.52,140.52 radius 2.6812
> volume erase #36 center 115.73,142.56,137.35 radius 2.6812
> volume erase #36 center 119.51,142.29,132.54 radius 2.6812
> volume erase #36 center 123.21,143.3,128.6 radius 2.6812
> volume erase #36 center 122.19,143.14,129.74 radius 2.6812
> volume erase #36 center 121.7,142.59,132.5 radius 2.6812
> volume erase #36 center 124.8,141.02,132.02 radius 2.6812
> volume erase #36 center 126.19,143.38,135.61 radius 2.6812
> volume erase #36 center 126.07,144.28,136.41 radius 2.6812
> volume erase #36 center 131.7,133.59,136.61 radius 2.6812
> volume erase #36 center 132.53,133.13,138.23 radius 2.6812
> volume erase #36 center 133.36,137.17,133.95 radius 2.6812
> volume erase #36 center 133.52,138.78,134.68 radius 2.6812
> volume erase #36 center 133.05,141.56,130.54 radius 2.6812
> volume erase #36 center 132.6,139.79,130.73 radius 2.6812
> volume erase #36 center 132.54,142.4,127.39 radius 2.6812
> volume erase #36 center 132.38,143.95,126.3 radius 2.6812
> volume erase #36 center 132.68,146.61,126.68 radius 2.6812
> volume erase #36 center 132.17,147.92,121.69 radius 2.6812
> volume erase #36 center 131.55,149.22,122.78 radius 2.6812
> volume erase #36 center 133.19,145.24,123.53 radius 2.6812
> volume erase #36 center 130.24,151.57,117.57 radius 2.6812
> volume erase #36 center 130.02,154.28,114.14 radius 2.6812
> volume erase #36 center 130.39,155.79,113.61 radius 2.6812
> volume erase #36 center 131.67,153.55,116.81 radius 2.6812
> volume erase #36 center 130.12,152.4,114.62 radius 2.6812
> volume erase #36 center 128.87,152.39,112.73 radius 2.6812
> volume erase #36 center 130.2,145.51,114.68 radius 2.6812
> volume erase #36 center 127.14,146.27,116.8 radius 2.6812
> volume erase #36 center 130.17,147.81,138.66 radius 2.6812
> volume erase #36 center 133.88,148.28,134.39 radius 2.6812
> volume erase #36 center 132.67,145.09,135.66 radius 2.6812
> volume erase #36 center 134.13,145.13,137.91 radius 2.6812
> volume erase #36 center 133.9,147.61,139.35 radius 2.6812
> volume erase #36 center 138.01,147.67,134.09 radius 2.6812
> volume erase #36 center 139.92,147,129.26 radius 2.6812
> volume erase #36 center 137.92,145.82,131.64 radius 2.6812
> volume erase #36 center 139.12,149.93,130.84 radius 2.6812
> volume erase #36 center 141.66,148.98,125.34 radius 2.6812
> volume erase #36 center 143.29,149.23,118.69 radius 2.6812
> volume erase #36 center 142.14,149.95,122.13 radius 2.6812
> volume erase #36 center 135.45,144.87,114.86 radius 2.6812
> volume erase #36 center 134.6,142.52,115.03 radius 2.6812
> volume erase #36 center 131.13,143.99,110.16 radius 2.6812
> volume erase #36 center 129.13,142.5,110.2 radius 2.6812
> volume erase #36 center 126.36,144.06,110.05 radius 2.6812
> volume erase #36 center 127.3,144.23,112 radius 2.6812
> volume erase #36 center 126.82,145.8,112.11 radius 2.6812
> show #!23 models
> hide #!36 models
> hide #!23 models
> show #!25 models
> hide #!25 models
> show #!31 models
> hide #!31 models
> show #!17 models
> hide #!17 models
> show #!23 models
> hide #!23 models
> show #!28 models
> hide #!28 models
> show #!29 models
> hide #!29 models
> show #!30 models
> show #!29 models
> show #!28 models
> show #!25 models
> hide #!25 models
> hide #!28 models
> hide #!29 models
> save "/Users/edk4001/Desktop/apo and propofol structure figures v82.cxs"
——— End of log from Tue Feb 1 21:41:10 2022 ———
opened ChimeraX session
> ui mousemode right "map eraser"
> volume erase #30 center 151.39,126.61,121.16 radius 7.3683
> volume erase #30 center 153.29,150.75,120.93 radius 7.3683
> save "/Users/edk4001/Desktop/apo and propofol structure figures v83.cxs"
> volume erase #30 center 156.61,132.06,129.58 radius 0.81458
[Repeated 1 time(s)]
> volume erase #30 center 155.06,132.82,130.61 radius 0.81458
> volume erase #30 center 155.2,133.48,130.29 radius 0.81458
> volume erase #30 center 155.33,133.78,130.22 radius 0.81458
> volume erase #30 center 147.99,155.01,131.14 radius 0.81458
> volume erase #30 center 147.6,155.18,130.63 radius 0.81458
> volume erase #30 center 147.38,155.29,130.19 radius 0.81458
> volume erase #30 center 146.86,155.6,130.14 radius 0.81458
> save "/Users/edk4001/Desktop/apo and propofol structure figures v84.cxs"
——— End of log from Tue Feb 1 21:45:41 2022 ———
opened ChimeraX session
OpenGL version: 4.1 Metal - 76.3
OpenGL renderer: Apple M1 Max
OpenGL vendor: AppleHardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro18,2
Processor Name: Unknown
Processor Speed: 2.4 GHz
Number of Processors: 1
Total Number of Cores: 10
L2 Cache: 20 MB
Memory: 64 GB
Software:
System Software Overview:
System Version: macOS 12.1 (21C52)
Kernel Version: Darwin 21.2.0
Time since boot: 2 days 5:37
Graphics/Displays:
Apple G13X:
Chipset Model: Apple G13X
Type: GPU
Bus: Built-In
Total Number of Cores: 32
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3456 x 2234 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.5.30
cftime: 1.5.1.1
charset-normalizer: 2.0.9
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31.5
ChimeraX-AtomicLibrary: 5.0
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4.dev202112100150
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.1
ChimeraX-ModelPanel: 1.3.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.8
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.15.1
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.0
ParmEd: 3.2.0
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.24
psutil: 5.8.0
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.3
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 4 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash in event loop / font machinery / saving session |
comment:2 by , 4 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
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Crash in native macOS font handling routines (CAImageQueuePing_). Maybe a Qt bug or ChimeraX corrupting memory.
On new Apple M1 Max machine.