![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Closed 4 years ago
#6060 closed defect (nonchimerax)
Graphics driver crash, macOS 10.15.7, Intel Iris Graphics 540
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.15.7-x86_64-i386-64bit
ChimeraX Version: 1.3rc202111031842 (2021-11-03 18:42:42 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x000000011296bdc0 (most recent call first):
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL/GL/VERSION/GL_1_5.py", line 125 in glBufferSubData
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 2676 in update_buffer_data
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1847 in update_buffers
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1859 in activate_bindings
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 786 in _draw_geometry
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 759 in draw_self
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 752 in draw
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1512 in _draw_multiple
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1499 in draw_opaque
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1523 in draw_depth
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 231 in _draw_scene
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 165 in draw
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 73 in draw_new_frame
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 158 in update_graphics_now
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/volume_viewer.py", line 2226 in moved_marker_cb
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/histogram.py", line 414 in move_marker_cb
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/volume_viewer.py", line 2152 in _drag
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/volume_viewer.py", line 2155 in mouseReleaseEvent
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 301 in event_loop
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 867 in init
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1018 in
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [7422]
Path: /Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.3.0 (1.3.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [7422]
User ID: 501
Date/Time: 2022-02-02 00:39:10.120 +0100
OS Version: Mac OS X 10.15.7 (19H1323)
Report Version: 12
Anonymous UUID: 6C7EE29E-D483-017F-ADC6-B5331DD88DD3
Sleep/Wake UUID: EF027076-EE05-464F-A0E2-F5AD814ADCBF
Time Awake Since Boot: 89000 seconds
Time Since Wake: 6500 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x00000813
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff70ff933a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff710b5e60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff70f1093e raise + 26
3 libsystem_platform.dylib 0x00007fff710aa5fd _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff70f80808 abort + 120
6 libGPUSupportMercury.dylib 0x00007fff581240a5 gpusGenerateCrashLog.cold.1 + 95
7 libGPUSupportMercury.dylib 0x00007fff5811b18f gpusGenerateCrashLog + 89
8 com.apple.driver.AppleIntelSKLGraphicsGLDriver 0x00007fff307e47b8 gpusKillClientExt + 9
9 libGPUSupportMercury.dylib 0x00007fff5811c6a1 gpusSubmitDataBuffers + 490
10 com.apple.driver.AppleIntelSKLGraphicsGLDriver 0x00007fff2fa50856 IntelCommandBuffer::getNew(GLDContextRec*) + 48
11 com.apple.driver.AppleIntelSKLGraphicsGLDriver 0x00007fff2fa50664 intelSubmitCommands + 171
12 com.apple.driver.AppleIntelSKLGraphicsGLDriver 0x00007fff2fa56e4f glrWriteBufferData + 561
13 GLEngine 0x00007fff4182cd6c glBufferSubData_Exec + 608
14 libffi.dylib 0x00007fff6ec53905 ffi_call_unix64 + 85
15 libffi.dylib 0x00007fff6ec53244 ffi_call_int + 694
16 _ctypes.cpython-39-darwin.so 0x000000011147cead _ctypes_callproc + 1037
17 _ctypes.cpython-39-darwin.so 0x0000000111476c36 PyCFuncPtr_call + 1206
18 org.python.python 0x000000010ca5d6cc _PyObject_Call + 140
19 org.python.python 0x000000010cab5d46 slot_tp_call + 230
20 wrapper.cpython-39-darwin.so 0x00000001289a02ae __pyx_pw_17OpenGL_accelerate_7wrapper_7Wrapper_3__call__ + 830
21 latebind.cpython-39-darwin.so 0x00000001289fc49e __pyx_pw_17OpenGL_accelerate_8latebind_8LateBind_11__call__ + 158
22 org.python.python 0x000000010ca5d17d _PyObject_MakeTpCall + 365
23 org.python.python 0x000000010cb3561c call_function + 876
24 org.python.python 0x000000010cb32b4b _PyEval_EvalFrameDefault + 25371
25 org.python.python 0x000000010cb36283 _PyEval_EvalCode + 2611
26 org.python.python 0x000000010ca5d8d1 _PyFunction_Vectorcall + 289
27 latebind.cpython-39-darwin.so 0x00000001289fe455 __pyx_pw_17OpenGL_accelerate_8latebind_5Curry_3__call__ + 165
28 org.python.python 0x000000010ca5d17d _PyObject_MakeTpCall + 365
29 org.python.python 0x000000010cb3561c call_function + 876
30 org.python.python 0x000000010cb32ab3 _PyEval_EvalFrameDefault + 25219
31 org.python.python 0x000000010ca5d948 function_code_fastcall + 104
32 org.python.python 0x000000010cb3558c call_function + 732
33 org.python.python 0x000000010cb32a92 _PyEval_EvalFrameDefault + 25186
34 org.python.python 0x000000010ca5d948 function_code_fastcall + 104
35 org.python.python 0x000000010cb3558c call_function + 732
36 org.python.python 0x000000010cb32a92 _PyEval_EvalFrameDefault + 25186
37 org.python.python 0x000000010ca5d948 function_code_fastcall + 104
38 org.python.python 0x000000010cb3558c call_function + 732
39 org.python.python 0x000000010cb32a92 _PyEval_EvalFrameDefault + 25186
40 org.python.python 0x000000010cb36283 _PyEval_EvalCode + 2611
41 org.python.python 0x000000010ca5d8d1 _PyFunction_Vectorcall + 289
42 org.python.python 0x000000010ca5f98a method_vectorcall + 202
43 org.python.python 0x000000010cb3558c call_function + 732
44 org.python.python 0x000000010cb32be1 _PyEval_EvalFrameDefault + 25521
45 org.python.python 0x000000010ca5d948 function_code_fastcall + 104
46 org.python.python 0x000000010cb3558c call_function + 732
47 org.python.python 0x000000010cb32a92 _PyEval_EvalFrameDefault + 25186
48 org.python.python 0x000000010ca5d948 function_code_fastcall + 104
49 org.python.python 0x000000010cb3558c call_function + 732
50 org.python.python 0x000000010cb32a92 _PyEval_EvalFrameDefault + 25186
51 org.python.python 0x000000010ca5d948 function_code_fastcall + 104
52 org.python.python 0x000000010cb3558c call_function + 732
53 org.python.python 0x000000010cb32b4b _PyEval_EvalFrameDefault + 25371
54 org.python.python 0x000000010ca5d948 function_code_fastcall + 104
55 org.python.python 0x000000010cb3558c call_function + 732
56 org.python.python 0x000000010cb32b4b _PyEval_EvalFrameDefault + 25371
57 org.python.python 0x000000010cb36283 _PyEval_EvalCode + 2611
58 org.python.python 0x000000010ca5d8d1 _PyFunction_Vectorcall + 289
59 org.python.python 0x000000010cb3558c call_function + 732
60 org.python.python 0x000000010cb32b4b _PyEval_EvalFrameDefault + 25371
61 org.python.python 0x000000010ca5d948 function_code_fastcall + 104
62 org.python.python 0x000000010cb3558c call_function + 732
63 org.python.python 0x000000010cb32a92 _PyEval_EvalFrameDefault + 25186
64 org.python.python 0x000000010cb36283 _PyEval_EvalCode + 2611
65 org.python.python 0x000000010ca5d8d1 _PyFunction_Vectorcall + 289
66 org.python.python 0x000000010ca5f98a method_vectorcall + 202
67 org.python.python 0x000000010cb3558c call_function + 732
68 org.python.python 0x000000010cb32be1 _PyEval_EvalFrameDefault + 25521
69 org.python.python 0x000000010ca5d948 function_code_fastcall + 104
70 org.python.python 0x000000010cb3558c call_function + 732
71 org.python.python 0x000000010cb32a92 _PyEval_EvalFrameDefault + 25186
72 org.python.python 0x000000010ca5d948 function_code_fastcall + 104
73 org.python.python 0x000000010cb3558c call_function + 732
74 org.python.python 0x000000010cb32a92 _PyEval_EvalFrameDefault + 25186
75 org.python.python 0x000000010ca5d948 function_code_fastcall + 104
76 org.python.python 0x000000010ca5f98a method_vectorcall + 202
77 org.python.python 0x000000010cb3558c call_function + 732
78 org.python.python 0x000000010cb32b4b _PyEval_EvalFrameDefault + 25371
79 org.python.python 0x000000010ca5d948 function_code_fastcall + 104
80 org.python.python 0x000000010ca5f98a method_vectorcall + 202
81 org.python.python 0x000000010cb3558c call_function + 732
82 org.python.python 0x000000010cb32b4b _PyEval_EvalFrameDefault + 25371
83 org.python.python 0x000000010cb36283 _PyEval_EvalCode + 2611
84 org.python.python 0x000000010ca5d8d1 _PyFunction_Vectorcall + 289
85 org.python.python 0x000000010ca5f98a method_vectorcall + 202
86 org.python.python 0x000000010cb3558c call_function + 732
87 org.python.python 0x000000010cb32ab3 _PyEval_EvalFrameDefault + 25219
88 org.python.python 0x000000010cb36283 _PyEval_EvalCode + 2611
89 org.python.python 0x000000010ca5d8d1 _PyFunction_Vectorcall + 289
90 org.python.python 0x000000010ca5fa79 method_vectorcall + 441
91 sip.cpython-39-darwin.so 0x00000001126cba47 sip_api_call_procedure_method + 199
92 QtWidgets.abi3.so 0x00000001185b9048 sipQGraphicsView::mouseReleaseEvent(QMouseEvent*) + 104
93 QtWidgets 0x0000000118ac3dfd QWidget::event(QEvent*) + 445
94 QtWidgets 0x0000000118b6c58d QFrame::event(QEvent*) + 45
95 QtWidgets 0x0000000118de7b07 QGraphicsView::viewportEvent(QEvent*) + 1191
96 QtWidgets.abi3.so 0x00000001185ba5df sipQGraphicsView::viewportEvent(QEvent*) + 191
97 QtCore 0x00000001121aaceb QCoreApplicationPrivate::sendThroughObjectEventFilters(QObject*, QEvent*) + 155
98 QtWidgets 0x0000000118a899d5 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 245
99 QtWidgets 0x0000000118a8c755 QApplication::notify(QObject*, QEvent*) + 6965
100 QtWidgets.abi3.so 0x000000011863cdb9 sipQApplication::notify(QObject*, QEvent*) + 233
101 QtCore 0x00000001121aaa34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
102 QtWidgets 0x0000000118a8a310 QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer&, bool, bool) + 896
103 QtWidgets 0x0000000118ae3022 QWidgetWindow::handleMouseEvent(QMouseEvent*) + 3266
104 QtWidgets 0x0000000118ae16e9 QWidgetWindow::event(QEvent*) + 233
105 QtWidgets 0x0000000118a899ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266
106 QtWidgets 0x0000000118a8ae11 QApplication::notify(QObject*, QEvent*) + 497
107 QtWidgets.abi3.so 0x000000011863cdb9 sipQApplication::notify(QObject*, QEvent*) + 233
108 QtCore 0x00000001121aaa34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
109 QtGui 0x00000001190f6e2e QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 3534
110 QtGui 0x00000001190dbd7b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 219
111 libqcocoa.dylib 0x0000000126cac260 QCocoaEventDispatcherPrivate::processPostedEvents() + 320
112 libqcocoa.dylib 0x0000000126cac9c8 QCocoaEventDispatcherPrivate::postedEventsSourceCallback(void*) + 40
113 com.apple.CoreFoundation 0x00007fff36cbb7e2 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
114 com.apple.CoreFoundation 0x00007fff36cbb781 __CFRunLoopDoSource0 + 103
115 com.apple.CoreFoundation 0x00007fff36cbb59b __CFRunLoopDoSources0 + 209
116 com.apple.CoreFoundation 0x00007fff36cba2ca __CFRunLoopRun + 927
117 com.apple.CoreFoundation 0x00007fff36cb98ce CFRunLoopRunSpecific + 462
118 com.apple.HIToolbox 0x00007fff358e5abd RunCurrentEventLoopInMode + 292
119 com.apple.HIToolbox 0x00007fff358e56f4 ReceiveNextEventCommon + 359
120 com.apple.HIToolbox 0x00007fff358e5579 _BlockUntilNextEventMatchingListInModeWithFilter + 64
121 com.apple.AppKit 0x00007fff33f2c739 _DPSNextEvent + 883
122 com.apple.AppKit 0x00007fff33f2af80 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
123 com.apple.AppKit 0x00007fff33f1cc8e -[NSApplication run] + 658
124 libqcocoa.dylib 0x0000000126cab62f QCocoaEventDispatcher::processEvents(QFlags) + 2495
125 QtCore 0x00000001121a6acf QEventLoop::exec(QFlags) + 431
126 QtCore 0x00000001121ab042 QCoreApplication::exec() + 130
127 QtWidgets.abi3.so 0x000000011872e702 meth_QApplication_exec_(_object*, _object*) + 82
128 org.python.python 0x000000010ca9c06d cfunction_call + 125
129 org.python.python 0x000000010ca5d17d _PyObject_MakeTpCall + 365
130 org.python.python 0x000000010cb3561c call_function + 876
131 org.python.python 0x000000010cb32ab3 _PyEval_EvalFrameDefault + 25219
132 org.python.python 0x000000010ca5d948 function_code_fastcall + 104
133 org.python.python 0x000000010ca5f98a method_vectorcall + 202
134 org.python.python 0x000000010cb3558c call_function + 732
135 org.python.python 0x000000010cb32ab3 _PyEval_EvalFrameDefault + 25219
136 org.python.python 0x000000010cb36283 _PyEval_EvalCode + 2611
137 org.python.python 0x000000010ca5d8d1 _PyFunction_Vectorcall + 289
138 org.python.python 0x000000010cb3558c call_function + 732
139 org.python.python 0x000000010cb32b4b _PyEval_EvalFrameDefault + 25371
140 org.python.python 0x000000010cb36283 _PyEval_EvalCode + 2611
141 org.python.python 0x000000010cb2c70b PyEval_EvalCode + 139
142 org.python.python 0x000000010cb29592 builtin_exec + 626
143 org.python.python 0x000000010ca9b86a cfunction_vectorcall_FASTCALL + 218
144 org.python.python 0x000000010cb3558c call_function + 732
145 org.python.python 0x000000010cb32b4b _PyEval_EvalFrameDefault + 25371
146 org.python.python 0x000000010cb36283 _PyEval_EvalCode + 2611
147 org.python.python 0x000000010ca5d8d1 _PyFunction_Vectorcall + 289
148 org.python.python 0x000000010cb3558c call_function + 732
149 org.python.python 0x000000010cb32b4b _PyEval_EvalFrameDefault + 25371
150 org.python.python 0x000000010cb36283 _PyEval_EvalCode + 2611
151 org.python.python 0x000000010ca5d8d1 _PyFunction_Vectorcall + 289
152 org.python.python 0x000000010cb9be20 pymain_run_module + 208
153 org.python.python 0x000000010cb9b537 Py_RunMain + 1431
154 org.python.python 0x000000010cb9bb3f pymain_main + 223
155 org.python.python 0x000000010cb9ba4b Py_Main + 43
156 edu.ucsf.cgl.ChimeraX 0x000000010ca15dc8 main + 120
157 libdyld.dylib 0x00007fff70eb1cc9 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff70ff5882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff710b6425 _pthread_cond_wait + 698
2 libopenblas.0.dylib 0x000000010d6dea9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff710b6109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff710b1b8b thread_start + 15
Thread 2:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff70ffbb96 kevent64 + 10
1 QtWebEngineCore 0x000000011c59ae6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000011c59acc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011c52362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011c4e77cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000011c52ea94 base::internal::ServiceThread::Run(base::RunLoop*) + 20
6 QtWebEngineCore 0x000000011c542a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000011c58be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff710b6109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff710b1b8b thread_start + 15
Thread 3:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff70ff2dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70ff3170 mach_msg + 60
2 QtWebEngineCore 0x000000011c590492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c538778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011c539150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011c538c44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x000000011c58be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff710b6109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff710b1b8b thread_start + 15
Thread 4:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff70ffbb96 kevent64 + 10
1 QtWebEngineCore 0x000000011c59ae6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000011c59acc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011c52362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011c4e77cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000120467f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102
6 QtWebEngineCore 0x000000011c542a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000011c58be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff710b6109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff710b1b8b thread_start + 15
Thread 5:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff70ff2dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70ff3170 mach_msg + 60
2 QtWebEngineCore 0x000000011c590492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c5902cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011c4b81db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011c52362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011c4e77cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011c542a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011c58be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff710b6109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff710b1b8b thread_start + 15
Thread 6:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff70ff5882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff710b6425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x000000011c587e18 base::ConditionVariable::Wait() + 104
3 QtWebEngineCore 0x000000011d83f5f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56
4 QtWebEngineCore 0x000000011c58be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
5 libsystem_pthread.dylib 0x00007fff710b6109 _pthread_start + 148
6 libsystem_pthread.dylib 0x00007fff710b1b8b thread_start + 15
Thread 7:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff70ff2dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70ff3170 mach_msg + 60
2 QtWebEngineCore 0x000000011c590492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c4b820f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x000000011c52362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x000000011c4e77cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x000000011c542a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000011c58be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff710b6109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff710b1b8b thread_start + 15
Thread 8:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff70ffbb96 kevent64 + 10
1 QtWebEngineCore 0x000000011c59ae6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000011c59acc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011c52362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011c4e77cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000011c542a7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x000000011c58be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff710b6109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff710b1b8b thread_start + 15
Thread 9:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff70ff2dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70ff3170 mach_msg + 60
2 QtWebEngineCore 0x000000011c590492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c5902cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011c4b81db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011c52362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011c4e77cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011c542a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011c58be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff710b6109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff710b1b8b thread_start + 15
Thread 10:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff70ff2dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70ff3170 mach_msg + 60
2 QtWebEngineCore 0x000000011c590492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c5902cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011c4b81db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011c52362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011c4e77cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011c542a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011c58be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff710b6109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff710b1b8b thread_start + 15
Thread 11:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff70ff2dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70ff3170 mach_msg + 60
2 QtWebEngineCore 0x000000011c590492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c5902cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011c4b81db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011c52362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011c4e77cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011c542a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011c58be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff710b6109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff710b1b8b thread_start + 15
Thread 12:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff70ff2dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70ff3170 mach_msg + 60
2 QtWebEngineCore 0x000000011c590492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c5902cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011c53876a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000011c539150 base::internal::WorkerThread::RunWorker() + 1024
6 QtWebEngineCore 0x000000011c538d34 base::internal::WorkerThread::RunDedicatedWorker() + 20
7 QtWebEngineCore 0x000000011c58be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff710b6109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff710b1b8b thread_start + 15
Thread 13:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff70ff2dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70ff3170 mach_msg + 60
2 QtWebEngineCore 0x000000011c590492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c5902cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011c4b81db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011c52362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011c4e77cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011c542a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011c58be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff710b6109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff710b1b8b thread_start + 15
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff70ff2dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70ff3170 mach_msg + 60
2 QtWebEngineCore 0x000000011c590492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c5902cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011c4b81db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011c52362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011c4e77cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011c542a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011c58be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff710b6109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff710b1b8b thread_start + 15
Thread 15:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff70ff2dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70ff3170 mach_msg + 60
2 com.apple.SkyLight 0x00007fff6607d4a7 CGSSnarfAndDispatchDatagrams + 237
3 com.apple.SkyLight 0x00007fff662ad37d SLSGetNextEventRecordInternal + 83
4 com.apple.SkyLight 0x00007fff6614bcbe SLEventCreateNextEvent + 136
5 com.apple.HIToolbox 0x00007fff358f2cc7 PullEventsFromWindowServerOnConnection(unsigned int, unsigned char, __CFMachPortBoost*) + 45
6 com.apple.HIToolbox 0x00007fff358f2c72 MessageHandler(__CFMachPort*, void*, long, void*) + 48
7 com.apple.CoreFoundation 0x00007fff36cea5a5 __CFMachPortPerform + 250
8 com.apple.CoreFoundation 0x00007fff36cbbd94 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE1_PERFORM_FUNCTION__ + 41
9 com.apple.CoreFoundation 0x00007fff36cbbce0 __CFRunLoopDoSource1 + 541
10 com.apple.CoreFoundation 0x00007fff36cba809 __CFRunLoopRun + 2270
11 com.apple.CoreFoundation 0x00007fff36cb98ce CFRunLoopRunSpecific + 462
12 com.apple.AppKit 0x00007fff340cdf74 _NSEventThread + 132
13 libsystem_pthread.dylib 0x00007fff710b6109 _pthread_start + 148
14 libsystem_pthread.dylib 0x00007fff710b1b8b thread_start + 15
Thread 16:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff70ff2dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70ff3170 mach_msg + 60
2 QtWebEngineCore 0x000000011c590492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c5902cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011c53876a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000011c538e3d base::internal::WorkerThread::RunWorker() + 237
6 QtWebEngineCore 0x000000011c538c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20
7 QtWebEngineCore 0x000000011c58be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff710b6109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff710b1b8b thread_start + 15
Thread 17:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff70ff2dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70ff3170 mach_msg + 60
2 QtWebEngineCore 0x000000011c590492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c538778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011c539150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011c538cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000011c58be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff710b6109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff710b1b8b thread_start + 15
Thread 18:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff70ff2dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70ff3170 mach_msg + 60
2 QtWebEngineCore 0x000000011c590492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c538778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011c539150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011c538cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000011c58be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff710b6109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff710b1b8b thread_start + 15
Thread 19:
0 libsystem_pthread.dylib 0x00007fff710b1b68 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000011296bdc0 rcx: 0x00007ff5d1855a58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00007ff5d1855a80 rsp: 0x00007ff5d1855a58
r8: 0x00007ff5d1855f48 r9: 0x9665a69331210c69 r10: 0x000000011296bdc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x00007ff5d4bcb518 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff70ff933a rfl: 0x0000000000000246 cr2: 0x00007ff5d1b96948
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x1111f6000 - 0x11130dff7 +libgfortran.3.dylib (0) /Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgfortran.3.dylib
0x11137b000 - 0x1113b1fff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x1113c5000 - 0x1113daff7 +libgcc_s.1.dylib (0) /Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgcc_s.1.dylib
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0x1119b6000 - 0x1119bcff7 +_blake2.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_blake2.cpython-39-darwin.so
0x1119c6000 - 0x111a19fff +_bounded_integers.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3-rc2021.11.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_bounded_integers.cpython-39-darwin.so
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0x7fff5cf62000 - 0x7fff5cfecff8 com.apple.MediaExperience (1.0 - 1) /System/Library/PrivateFrameworks/MediaExperience.framework/Versions/A/MediaExperience
0x7fff5cfed000 - 0x7fff5d020fff com.apple.MediaKit (16 - 923) /System/Library/PrivateFrameworks/MediaKit.framework/Versions/A/MediaKit
0x7fff5d0e5000 - 0x7fff5d47bff9 com.apple.MediaRemote (1.0 - 1) /System/Library/PrivateFrameworks/MediaRemote.framework/Versions/A/MediaRemote
0x7fff5d47c000 - 0x7fff5d4b8ffc com.apple.MediaServices (1.0 - 1) /System/Library/PrivateFrameworks/MediaServices.framework/Versions/A/MediaServices
0x7fff5d7c6000 - 0x7fff5d812fff com.apple.spotlight.metadata.utilities (1.0 - 2076.7.1) /System/Library/PrivateFrameworks/MetadataUtilities.framework/Versions/A/MetadataUtilities
0x7fff5d813000 - 0x7fff5d8e4ffa com.apple.gpusw.MetalTools (1.0 - 1) /System/Library/PrivateFrameworks/MetalTools.framework/Versions/A/MetalTools
0x7fff5d942000 - 0x7fff5d95bff4 com.apple.MobileAssets (1.0 - 619.120.1) /System/Library/PrivateFrameworks/MobileAsset.framework/Versions/A/MobileAsset
0x7fff5dc6f000 - 0x7fff5dc8dfff com.apple.MobileKeyBag (2.0 - 1.0) /System/Library/PrivateFrameworks/MobileKeyBag.framework/Versions/A/MobileKeyBag
0x7fff5dd59000 - 0x7fff5deefffd com.apple.Montreal (1.0 - 121.1) /System/Library/PrivateFrameworks/Montreal.framework/Versions/A/Montreal
0x7fff5def0000 - 0x7fff5df20ff7 com.apple.MultitouchSupport.framework (3440.1 - 3440.1) /System/Library/PrivateFrameworks/MultitouchSupport.framework/Versions/A/MultitouchSupport
0x7fff5e420000 - 0x7fff5e42afff com.apple.NetAuth (6.2 - 6.2) /System/Library/PrivateFrameworks/NetAuth.framework/Versions/A/NetAuth
0x7fff5e4ec000 - 0x7fff5e508ff0 com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff5ee41000 - 0x7fff5ee8cffb com.apple.OTSVG (1.0 - 643.1.5.7) /System/Library/PrivateFrameworks/OTSVG.framework/Versions/A/OTSVG
0x7fff600aa000 - 0x7fff600b5ff2 com.apple.PerformanceAnalysis (1.243.3 - 243.3) /System/Library/PrivateFrameworks/PerformanceAnalysis.framework/Versions/A/PerformanceAnalysis
0x7fff600b6000 - 0x7fff600deffb com.apple.persistentconnection (1.0 - 1.0) /System/Library/PrivateFrameworks/PersistentConnection.framework/Versions/A/PersistentConnection
0x7fff61b59000 - 0x7fff61b89ff7 com.apple.pluginkit.framework (1.0 - 1) /System/Library/PrivateFrameworks/PlugInKit.framework/Versions/A/PlugInKit
0x7fff61bb4000 - 0x7fff61bc7ffc com.apple.PowerLog (1.0 - 1) /System/Library/PrivateFrameworks/PowerLog.framework/Versions/A/PowerLog
0x7fff62a43000 - 0x7fff62a9dff6 com.apple.ProtectedCloudStorage (1.0 - 1) /System/Library/PrivateFrameworks/ProtectedCloudStorage.framework/Versions/A/ProtectedCloudStorage
0x7fff62a9e000 - 0x7fff62ab7ffb com.apple.ProtocolBuffer (1 - 274.24.9.16.3) /System/Library/PrivateFrameworks/ProtocolBuffer.framework/Versions/A/ProtocolBuffer
0x7fff62bc9000 - 0x7fff62bccff4 com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem
0x7fff62bcd000 - 0x7fff62bf0ff0 com.apple.quicklook.QuickLookSupport (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookSupport.framework/Versions/A/QuickLookSupport
0x7fff62c37000 - 0x7fff62cb0ff3 com.apple.Rapport (1.9.5 - 195.2) /System/Library/PrivateFrameworks/Rapport.framework/Versions/A/Rapport
0x7fff62f17000 - 0x7fff62f40ff1 com.apple.RemoteViewServices (2.0 - 148) /System/Library/PrivateFrameworks/RemoteViewServices.framework/Versions/A/RemoteViewServices
0x7fff630a5000 - 0x7fff630e0ff0 com.apple.RunningBoardServices (1.0 - 223.140.2) /System/Library/PrivateFrameworks/RunningBoardServices.framework/Versions/A/RunningBoardServices
0x7fff649c1000 - 0x7fff649c4ff5 com.apple.SecCodeWrapper (4.0 - 448.100.6) /System/Library/PrivateFrameworks/SecCodeWrapper.framework/Versions/A/SecCodeWrapper
0x7fff64b37000 - 0x7fff64c5efff com.apple.Sharing (1526.37 - 1526.37) /System/Library/PrivateFrameworks/Sharing.framework/Versions/A/Sharing
0x7fff64cb7000 - 0x7fff64cd5ff2 com.apple.shortcut (2.16 - 106) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff64cd6000 - 0x7fff64cf6ff5 com.apple.sidecar-core (1.0 - 209.40.4) /System/Library/PrivateFrameworks/SidecarCore.framework/Versions/A/SidecarCore
0x7fff64cf7000 - 0x7fff64d09ff0 com.apple.sidecar-ui (1.0 - 209.40.4) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff66073000 - 0x7fff66369fff com.apple.SkyLight (1.600.0 - 451.6) /System/Library/PrivateFrameworks/SkyLight.framework/Versions/A/SkyLight
0x7fff66bb6000 - 0x7fff66bc4ffb com.apple.SpeechRecognitionCore (6.0.91.2 - 6.0.91.2) /System/Library/PrivateFrameworks/SpeechRecognitionCore.framework/Versions/A/SpeechRecognitionCore
0x7fff672a0000 - 0x7fff672e1ff9 com.apple.StreamingZip (1.0 - 1) /System/Library/PrivateFrameworks/StreamingZip.framework/Versions/A/StreamingZip
0x7fff673f8000 - 0x7fff67401ff7 com.apple.SymptomDiagnosticReporter (1.0 - 1238.120.2) /System/Library/PrivateFrameworks/SymptomDiagnosticReporter.framework/Versions/A/SymptomDiagnosticReporter
0x7fff67472000 - 0x7fff6749cffe com.apple.framework.SystemAdministration (1.0 - 1.0) /System/Library/PrivateFrameworks/SystemAdministration.framework/Versions/A/SystemAdministration
0x7fff676b8000 - 0x7fff676c8ff3 com.apple.TCC (1.0 - 1) /System/Library/PrivateFrameworks/TCC.framework/Versions/A/TCC
0x7fff67bed000 - 0x7fff67cb3ff0 com.apple.TextureIO (3.10.9 - 3.10.9) /System/Library/PrivateFrameworks/TextureIO.framework/Versions/A/TextureIO
0x7fff67e4a000 - 0x7fff67e4bfff com.apple.TrustEvaluationAgent (2.0 - 33) /System/Library/PrivateFrameworks/TrustEvaluationAgent.framework/Versions/A/TrustEvaluationAgent
0x7fff67e83000 - 0x7fff680dbff0 com.apple.UIFoundation (1.0 - 662) /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation
0x7fff68172000 - 0x7fff68178ffe com.apple.URLFormatting (119 - 119.18) /System/Library/PrivateFrameworks/URLFormatting.framework/Versions/A/URLFormatting
0x7fff68d78000 - 0x7fff68d98ffc com.apple.UserManagement (1.0 - 1) /System/Library/PrivateFrameworks/UserManagement.framework/Versions/A/UserManagement
0x7fff69b44000 - 0x7fff69c2fff2 com.apple.ViewBridge (468 - 468) /System/Library/PrivateFrameworks/ViewBridge.framework/Versions/A/ViewBridge
0x7fff69dd5000 - 0x7fff69dd6fff com.apple.WatchdogClient.framework (1.0 - 67.120.2) /System/Library/PrivateFrameworks/WatchdogClient.framework/Versions/A/WatchdogClient
0x7fff6aa06000 - 0x7fff6aa09ffa com.apple.dt.XCTTargetBootstrap (1.0 - 16091) /System/Library/PrivateFrameworks/XCTTargetBootstrap.framework/Versions/A/XCTTargetBootstrap
0x7fff6aa83000 - 0x7fff6aa91ff5 com.apple.audio.caulk (1.0 - 32.3) /System/Library/PrivateFrameworks/caulk.framework/Versions/A/caulk
0x7fff6add3000 - 0x7fff6add5ff3 com.apple.loginsupport (1.0 - 1) /System/Library/PrivateFrameworks/login.framework/Versions/A/Frameworks/loginsupport.framework/Versions/A/loginsupport
0x7fff6add6000 - 0x7fff6ade9ffd com.apple.login (3.0 - 3.0) /System/Library/PrivateFrameworks/login.framework/Versions/A/login
0x7fff6ae1b000 - 0x7fff6ae27ffd com.apple.perfdata (1.0 - 51.100.6) /System/Library/PrivateFrameworks/perfdata.framework/Versions/A/perfdata
0x7fff6d8ac000 - 0x7fff6d8b8ff9 libAudioStatistics.dylib (1104.100) /usr/lib/libAudioStatistics.dylib
0x7fff6d8b9000 - 0x7fff6d8ecffa libAudioToolboxUtility.dylib (1104.100) /usr/lib/libAudioToolboxUtility.dylib
0x7fff6d8f3000 - 0x7fff6d927fff libCRFSuite.dylib (48) /usr/lib/libCRFSuite.dylib
0x7fff6d92a000 - 0x7fff6d934fff libChineseTokenizer.dylib (34) /usr/lib/libChineseTokenizer.dylib
0x7fff6d935000 - 0x7fff6d9bdfff libCoreStorage.dylib (551.0.1) /usr/lib/libCoreStorage.dylib
0x7fff6d9c0000 - 0x7fff6d9c2ff7 libDiagnosticMessagesClient.dylib (112) /usr/lib/libDiagnosticMessagesClient.dylib
0x7fff6da08000 - 0x7fff6dbbfffb libFosl_dynamic.dylib (100.4) /usr/lib/libFosl_dynamic.dylib
0x7fff6dbe6000 - 0x7fff6dbecff3 libIOReport.dylib (54) /usr/lib/libIOReport.dylib
0x7fff6dcce000 - 0x7fff6dcd5fff libMatch.1.dylib (36) /usr/lib/libMatch.1.dylib
0x7fff6dd04000 - 0x7fff6dd24ff7 libMobileGestalt.dylib (826.140.5) /usr/lib/libMobileGestalt.dylib
0x7fff6dda4000 - 0x7fff6de81ff7 libSMC.dylib (20) /usr/lib/libSMC.dylib
0x7fff6de96000 - 0x7fff6de97fff libSystem.B.dylib (1281.100.1) /usr/lib/libSystem.B.dylib
0x7fff6de98000 - 0x7fff6df23ff7 libTelephonyUtilDynamic.dylib (5017.1) /usr/lib/libTelephonyUtilDynamic.dylib
0x7fff6df24000 - 0x7fff6df25fff libThaiTokenizer.dylib (3) /usr/lib/libThaiTokenizer.dylib
0x7fff6df3d000 - 0x7fff6df53fff libapple_nghttp2.dylib (1.39.2) /usr/lib/libapple_nghttp2.dylib
0x7fff6df88000 - 0x7fff6dffaff7 libarchive.2.dylib (72.140.2) /usr/lib/libarchive.2.dylib
0x7fff6dffb000 - 0x7fff6e094fe5 libate.dylib (3.0.1) /usr/lib/libate.dylib
0x7fff6e098000 - 0x7fff6e098ff3 libauto.dylib (187) /usr/lib/libauto.dylib
0x7fff6e099000 - 0x7fff6e15dffe libboringssl.dylib (283.120.1) /usr/lib/libboringssl.dylib
0x7fff6e15e000 - 0x7fff6e16effb libbsm.0.dylib (60.100.1) /usr/lib/libbsm.0.dylib
0x7fff6e16f000 - 0x7fff6e17bfff libbz2.1.0.dylib (44) /usr/lib/libbz2.1.0.dylib
0x7fff6e17c000 - 0x7fff6e1cefff libc++.1.dylib (902.1) /usr/lib/libc++.1.dylib
0x7fff6e1cf000 - 0x7fff6e1e4ffb libc++abi.dylib (902) /usr/lib/libc++abi.dylib
0x7fff6e1e5000 - 0x7fff6e1e5fff libcharset.1.dylib (59) /usr/lib/libcharset.1.dylib
0x7fff6e1e6000 - 0x7fff6e1f7fff libcmph.dylib (8) /usr/lib/libcmph.dylib
0x7fff6e1f8000 - 0x7fff6e20ffd7 libcompression.dylib (87.1) /usr/lib/libcompression.dylib
0x7fff6e4e9000 - 0x7fff6e4ffff7 libcoretls.dylib (167) /usr/lib/libcoretls.dylib
0x7fff6e500000 - 0x7fff6e501fff libcoretls_cfhelpers.dylib (167) /usr/lib/libcoretls_cfhelpers.dylib
0x7fff6e9a4000 - 0x7fff6eaa8fef libcrypto.44.dylib (47.140.1) /usr/lib/libcrypto.44.dylib
0x7fff6eaab000 - 0x7fff6eab6fff libcsfde.dylib (551.0.1) /usr/lib/libcsfde.dylib
0x7fff6eabe000 - 0x7fff6eb1dff7 libcups.2.dylib (483.7) /usr/lib/libcups.2.dylib
0x7fff6eb1f000 - 0x7fff6eb84ff7 libcurl.4.dylib (118.120.5) /usr/lib/libcurl.4.dylib
0x7fff6ec27000 - 0x7fff6ec27fff libenergytrace.dylib (21) /usr/lib/libenergytrace.dylib
0x7fff6ec28000 - 0x7fff6ec40fff libexpat.1.dylib (19.60.2) /usr/lib/libexpat.1.dylib
0x7fff6ec41000 - 0x7fff6ec4dffb libexslt.0.dylib (16.12) /usr/lib/libexslt.0.dylib
0x7fff6ec4e000 - 0x7fff6ec50fff libfakelink.dylib (149.1) /usr/lib/libfakelink.dylib
0x7fff6ec51000 - 0x7fff6ec56f57 libffi.dylib (26) /usr/lib/libffi.dylib
0x7fff6ec5f000 - 0x7fff6ec64fff libgermantok.dylib (24) /usr/lib/libgermantok.dylib
0x7fff6ec65000 - 0x7fff6ec6eff7 libheimdal-asn1.dylib (564.140.7) /usr/lib/libheimdal-asn1.dylib
0x7fff6ec6f000 - 0x7fff6ed5ffff libiconv.2.dylib (59) /usr/lib/libiconv.2.dylib
0x7fff6ed60000 - 0x7fff6efb7fff libicucore.A.dylib (64260.0.1) /usr/lib/libicucore.A.dylib
0x7fff6efd1000 - 0x7fff6efd2fff liblangid.dylib (133) /usr/lib/liblangid.dylib
0x7fff6efd3000 - 0x7fff6efebff3 liblzma.5.dylib (16) /usr/lib/liblzma.5.dylib
0x7fff6f003000 - 0x7fff6f0aaff7 libmecab.dylib (883.11) /usr/lib/libmecab.dylib
0x7fff6f0ab000 - 0x7fff6f30dff1 libmecabra.dylib (883.11) /usr/lib/libmecabra.dylib
0x7fff6f67a000 - 0x7fff6f6a9fff libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib
0x7fff6f7d9000 - 0x7fff6fc55ff5 libnetwork.dylib (1880.120.4) /usr/lib/libnetwork.dylib
0x7fff6fc56000 - 0x7fff6fc6dfff libnetworkextension.dylib (1095.140.2) /usr/lib/libnetworkextension.dylib
0x7fff6fcf6000 - 0x7fff6fd29fde libobjc.A.dylib (787.1) /usr/lib/libobjc.A.dylib
0x7fff6fd2a000 - 0x7fff6fd2bff7 libodfde.dylib (26) /usr/lib/libodfde.dylib
0x7fff6fd3c000 - 0x7fff6fd40fff libpam.2.dylib (25.100.1) /usr/lib/libpam.2.dylib
0x7fff6fd43000 - 0x7fff6fd79fff libpcap.A.dylib (89.120.2) /usr/lib/libpcap.A.dylib
0x7fff6fdb9000 - 0x7fff6fdc7ff9 libperfcheck.dylib (37.100.2) /usr/lib/libperfcheck.dylib
0x7fff6fdc8000 - 0x7fff6fdcbff3 libpmenergy.dylib (214.120.2) /usr/lib/libpmenergy.dylib
0x7fff6fdcc000 - 0x7fff6fdcefff libpmsample.dylib (214.120.2) /usr/lib/libpmsample.dylib
0x7fff6fdfd000 - 0x7fff6fe15fff libresolv.9.dylib (67.40.1) /usr/lib/libresolv.9.dylib
0x7fff6fe17000 - 0x7fff6fe5bff7 libsandbox.1.dylib (1217.141.3) /usr/lib/libsandbox.1.dylib
0x7fff6fe5c000 - 0x7fff6fe6eff7 libsasl2.2.dylib (213.120.1) /usr/lib/libsasl2.2.dylib
0x7fff6fe6f000 - 0x7fff6fe70ff7 libspindump.dylib (281.3) /usr/lib/libspindump.dylib
0x7fff6fe71000 - 0x7fff7005bff7 libsqlite3.dylib (308.6) /usr/lib/libsqlite3.dylib
0x7fff7014f000 - 0x7fff7017cffb libssl.46.dylib (47.140.1) /usr/lib/libssl.46.dylib
0x7fff70251000 - 0x7fff702abff8 libusrtcp.dylib (1880.120.4) /usr/lib/libusrtcp.dylib
0x7fff702ac000 - 0x7fff702afffb libutil.dylib (57) /usr/lib/libutil.dylib
0x7fff702b0000 - 0x7fff702bdff7 libxar.1.dylib (425.2) /usr/lib/libxar.1.dylib
0x7fff702c3000 - 0x7fff703a5fff libxml2.2.dylib (33.9) /usr/lib/libxml2.2.dylib
0x7fff703a9000 - 0x7fff703d1fff libxslt.1.dylib (16.12) /usr/lib/libxslt.1.dylib
0x7fff703d2000 - 0x7fff703e4ff3 libz.1.dylib (76) /usr/lib/libz.1.dylib
0x7fff70c93000 - 0x7fff70c98ff3 libcache.dylib (83) /usr/lib/system/libcache.dylib
0x7fff70c99000 - 0x7fff70ca4fff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib
0x7fff70ca5000 - 0x7fff70cacfff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff70cad000 - 0x7fff70cb6ff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib
0x7fff70cb7000 - 0x7fff70d49fdb libcorecrypto.dylib (866.140.2) /usr/lib/system/libcorecrypto.dylib
0x7fff70e56000 - 0x7fff70e96ff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib
0x7fff70e97000 - 0x7fff70ecdfff libdyld.dylib (750.7) /usr/lib/system/libdyld.dylib
0x7fff70ece000 - 0x7fff70eceffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff70ecf000 - 0x7fff70edbff3 libkxld.dylib (6153.141.35) /usr/lib/system/libkxld.dylib
0x7fff70edc000 - 0x7fff70edcff7 liblaunch.dylib (1738.140.3) /usr/lib/system/liblaunch.dylib
0x7fff70edd000 - 0x7fff70ee2ff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib
0x7fff70ee3000 - 0x7fff70ee5ff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib
0x7fff70ee6000 - 0x7fff70ee7ff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib
0x7fff70ee8000 - 0x7fff70effff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib
0x7fff70f00000 - 0x7fff70f00ff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib
0x7fff70f01000 - 0x7fff70f88fff libsystem_c.dylib (1353.100.4) /usr/lib/system/libsystem_c.dylib
0x7fff70f89000 - 0x7fff70f8cffb libsystem_configuration.dylib (1061.141.2) /usr/lib/system/libsystem_configuration.dylib
0x7fff70f8d000 - 0x7fff70f90fff libsystem_coreservices.dylib (114.1) /usr/lib/system/libsystem_coreservices.dylib
0x7fff70f91000 - 0x7fff70f99fff libsystem_darwin.dylib (1353.100.4) /usr/lib/system/libsystem_darwin.dylib
0x7fff70f9a000 - 0x7fff70fa1fff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff70fa2000 - 0x7fff70fa3ffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff70fa4000 - 0x7fff70ff1ff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib
0x7fff70ff2000 - 0x7fff7101eff7 libsystem_kernel.dylib (6153.141.35) /usr/lib/system/libsystem_kernel.dylib
0x7fff7101f000 - 0x7fff71066fff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff71067000 - 0x7fff7108efff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib
0x7fff7108f000 - 0x7fff7109cffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff7109d000 - 0x7fff710a6ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff710a7000 - 0x7fff710affef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff710b0000 - 0x7fff710bafff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff710bb000 - 0x7fff710bfff3 libsystem_sandbox.dylib (1217.141.3) /usr/lib/system/libsystem_sandbox.dylib
0x7fff710c0000 - 0x7fff710c2fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff710c3000 - 0x7fff710caffb libsystem_symptoms.dylib (1238.120.2) /usr/lib/system/libsystem_symptoms.dylib
0x7fff710cb000 - 0x7fff710e1ff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib
0x7fff710e3000 - 0x7fff710e8ff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff710e9000 - 0x7fff7111effe libxpc.dylib (1738.140.3) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 22
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 60947
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%)
Writable regions: Total=6.3G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=6.3G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 640K 5
Activity Tracing 256K 1
CG backing stores 1204K 3
CG image 1888K 33
CoreAnimation 10.7M 125
CoreGraphics 8K 1
CoreImage 44K 5
CoreUI image data 3624K 32
Foundation 24K 2
Image IO 28K 3
Kernel Alloc Once 8K 1
MALLOC 5.6G 5646
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 24K 3
OpenGL GLSL 384K 5
STACK GUARD 76K 19
Stack 137.6M 20
Stack Guard 56.0M 1
VM_ALLOCATE 180.5M 180
__DATA 54.2M 552
__DATA_CONST 44K 4
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 481.5M 148
__OBJC_RO 32.3M 1
__OBJC_RW 1908K 2
__TEXT 564.4M 518
__UNICODE 564K 1
mapped file 419.6M 64
shared memory 2856K 28
=========== ======= =======
TOTAL 7.9G 7414
TOTAL, minus reserved VM space 7.6G 7414
===== Log before crash start =====
UCSF ChimeraX version: 1.3rc202111031842 (2021-11-03)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/Dounia/Desktop/Thesis/Experiments 2022/Dodecamer.cxs"
Opened Dimer1 as #2, grid size 432,432,432, pixel 0.656, shown at level
0.0679, step 1, values float32
Opened Hexamer as #5, grid size 504,504,504, pixel 0.984, shown at level
0.0784, step 1, values float32
Opened Octamer as #6, grid size 504,504,504, pixel 0.984, shown at level
0.0582, step 1, values float32
Opened Tetramer as #8, grid size 504,504,504, pixel 0.984, shown at level
0.0812, step 1, values float32
Opened Dimer2 as #1, grid size 432,432,432, pixel 0.656, shown at level
0.0679, step 1, values float32
Opened Dimer3 as #7, grid size 432,432,432, pixel 0.656, shown at level
0.0679, step 1, values float32
Opened Dimer4 as #9, grid size 432,432,432, pixel 0.656, shown at level
0.0679, step 1, values float32
Opened Dodecamer as #11, grid size 504,504,504, pixel 0.984, shown at level
0.0127, step 1, values float32
Opened Dimer5 as #10, grid size 432,432,432, pixel 0.656, shown at level
0.0679, step 1, values float32
Opened Dimer6 as #12, grid size 432,432,432, pixel 0.656, shown at level
0.0679, step 1, values float32
opened ChimeraX session
> show #!8 models
> hide #!10 models
> hide #!12 models
> hide #!2 models
> show #!2 models
> hide #!7 models
> hide #!9 models
> volume #8 color #e3c9ac89
> volume #8 level 0.09217
> color #1 #cccccc models transparency 0
> color #1 #bfbfbf models transparency 0
> color #2 #bfbfbf models transparency 0
> ui mousemode right zoom
> color #2 #bfbfbf models transparency 0
> color #2 #e3c9ac models transparency 0
> color #1 #e3c9ac models transparency 0
> volume #8 level 0.112
> volume #8 level 0.08667
> hide #!8 models
> show #!8 models
> volume #8 level 0.09217
> view
> ui tool show "Side View"
> volume #8 level 0.08625
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!1 models
> show #!2 models
> show #!1 models
> save fig2-4.png transparentBackground true pixelSize 0.05
> turn
> save fig2-41.png transparentBackground true pixelSize 0.05
> volume #8 color #e3c9ac19
> volume #8 color #e3c9ac00
> volume #8 color #e3c9ac
> volume #8 color #e3c9ac76
> volume #8 color #e3c9ac
> hide #!2 models
> hide #!1 models
> show #!1 models
> show #!2 models
> volume #8 color #e3c9ac80
> lighting soft
> hide #!8 models
> show #!8 models
> lighting flat
> lighting soft
> save fig2-42.png transparentBackground true pixelSize 0.05
> volume #2 level 0.08862
> volume #2 level 0.08918
> select #2
4 models selected
> surface dust #2 size 6.56
> ~select #2
Nothing selected
> volume #1 level 0.0892
> volume #8 level 0.1061
> volume #8 level 0.09132
> volume #8 level 0.09555
> volume #8 level 0.07948
> volume #2 level 0.08806
> volume #1 level 0.08416
> volume #8 color #e3c9acac
> volume #8 color #e3c9ac9a
> lighting flat
> save fig2-43.png transparentBackground true pixelSize 0.05
> lighting soft
> graphics silhouettes false
> graphics silhouettes true
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting shadows true
> lighting shadows false
> lighting soft
> save fig2-44.png transparentBackground true pixelSize 0.05
> color #1 #bbd5c9
> color #2 #bbd5c9
> color #8 #bbd5c9
> lighting flat
> hide #!8 models
> volume #2 level 0.09254
> volume #1 level 0.0925
> volume #1 level 0.09194
> show #!8 models
> volume #2 level 0.08526
> volume #1 level 853
> volume #1 level 0.0853
> lighting flat
> lighting soft
> lighting flat
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting shadows true
> lighting shadows false
> lighting flat
> graphics silhouettes false
> graphics silhouettes true
> save fig2-5.png transparentBackground true pixelSize 0.05
> color #8 #bbd5c9b6 models
> color #8 #bbd5c9d3 models
> color #8 #bbd5c9d0 models
> color #8 #bbd5c9ce models
> save fig2-51.png transparentBackground true pixelSize 0.05
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!8 models
> color #5 #d6b8d5 models transparency 0
> color #5 #d6b8f6 models transparency 0
> color #5 #d6b8e8 models transparency 0
> color #5 #f1b8e8 models transparency 0
> color #5 #ffb8e8 models transparency 0
> color #5 #ffb8e88c models
> color #5 #ffb8e899 models
> color #5 #ffcbe899 models
> color #5 #ffa5e899 models
> color #5 #ffbfe899 models
> color #5 #ffd5e899 models
> color #5 #ffd5fa99 models
> color #5 #ffd5ff99 models
> color #5 #f4b0fd99 models
> color #5 #fdb1f599 models
> color #5 #f4b3fd99 models
> color #5 #f5c1fd99 models
> color #5 #f7c3fd99 models
> color #2 #f7c2fd models transparency 0
> color #1 #f7c2fd models transparency 0
> show #!7 models
> color #7 #f7c2fd models transparency 0
> volume #5 level 0.01532
> volume #5 level 0.07414
> volume #7 level 0.0853
> lighting flat
> lighting soft
> lighting flat
> volume #5 level 0.08952
> volume #5 level 0.08914
> volume #5 color #f7c3fdc4
> volume #5 color #f7c3fdb7
> volume #5 color #f7c3fdb8
> save fig2-6.png transparentBackground true pixelSize 0.05
> show #!8 models
> volume #8 level 0.0891
> hide #!5 models
> hide #!7 models
> color #5 #f7c3fdb8 models
> color #5 #bbd5c9 models transparency 0
> color #2 #bbd5c9 models transparency 0
> color #1 #bbd5c9 models transparency 0
> show #!6 models
> color #2 #c2d2f5 models transparency 0
> color #7 #c2d2f5 models transparency 0
> show #!7 models
> color #1 #c2d2f5 models transparency 0
> hide #!8 models
> show #!9 models
> color #9 #c2d2f5 models transparency 0
> color #6 #c2d2f5aa models
> color #6 #c2d2f5c3 models
> volume #6 level 0.04933
> volume #6 level 0.06787
> volume #6 level 0.07393
> volume #6 level 0.06609
> volume #6 level 0.06894
> lighting flat
> lighting soft
> lighting simple
> lighting soft
> lighting flat
> volume #6 level 0.07108
> color #6 #c2d2f596 models
> color #6 #c2d2f5a5 models
> color #6 #c2d2f5b0 models
> save fig2-7.png transparentBackground true pixelSize 0.05
> volume #9 level 0.0853
> ui tool show "Fit in Map"
Fit map Dimer4 in map Hexamer using 69144 points
correlation = 0.9743, correlation about mean = 0.3731, overlap = 865
steps = 268, shift = 41.7, angle = 22.4 degrees
Position of Dimer4 (#9) relative to Hexamer (#5) coordinates:
Matrix rotation and translation
-0.69793620 -0.58766926 -0.40930416 492.44374762
0.32376423 -0.76870255 0.55160956 237.91769404
-0.63879713 0.25247024 0.72677163 235.08330075
Axis -0.30328281 0.23267177 0.92405811
Axis point 254.93972087 164.97072185 0.00000000
Rotation angle (degrees) 150.45092036
Shift along axis 123.23763456
Fit map Dimer1 in map Hexamer using 69228 points
correlation = 0.9731, correlation about mean = 0.356, overlap = 871.8
steps = 100, shift = 1.9, angle = 13.3 degrees
Position of Dimer1 (#2) relative to Hexamer (#5) coordinates:
Matrix rotation and translation
-0.85918963 -0.20302748 -0.46965202 456.23708288
-0.12789567 -0.80354492 0.58134176 302.55930904
-0.49541485 0.55954927 0.66443113 104.81364622
Axis -0.26459542 0.31280167 0.91221948
Axis point 240.14898137 138.66821714 0.00000000
Rotation angle (degrees) 177.63984789
Shift along axis 69.53586581
Fit map Dimer2 in map Hexamer using 69144 points
correlation = 0.9746, correlation about mean = 0.3739, overlap = 858.8
steps = 88, shift = 0.872, angle = 8.52 degrees
Position of Dimer2 (#1) relative to Hexamer (#5) coordinates:
Matrix rotation and translation
-0.73539522 -0.44516049 -0.51090704 488.78524590
0.08380255 -0.80790919 0.58331797 275.85717338
-0.67243662 0.38615394 0.63143814 195.59367536
Axis -0.33578758 0.27509897 0.90087028
Axis point 259.87996366 151.24477628 0.00000000
Rotation angle (degrees) 162.92732480
Shift along axis 87.96453792
Fit map Dimer3 in map Hexamer using 69144 points
correlation = 0.9743, correlation about mean = 0.3731, overlap = 865
steps = 72, shift = 0.301, angle = 0.771 degrees
Position of Dimer3 (#7) relative to Hexamer (#5) coordinates:
Matrix rotation and translation
-0.69790173 -0.58773338 -0.40927086 492.43534774
0.32371191 -0.76861381 0.55176391 237.89239215
-0.63886130 0.25259113 0.72667321 235.10376524
Axis -0.30330328 0.23276027 0.92402910
Axis point 254.94605712 164.94954991 0.00000000
Rotation angle (degrees) 150.44948000
Shift along axis 123.25736073
> save fig2-7.png transparentBackground true pixelSize 0.05
> volume #6 color #c2d2f5
> lighting soft
> lighting flat
> volume #6 color #c2d2f5aa
> volume #9 level 0.08082
> save fig2-8.png transparentBackground true pixelSize 0.05
> show #!6 models
> hide #!7 models
> hide #!1 models
> hide #!2 models
> save fig2-81.png transparentBackground true pixelSize 0.05
> volume #9 level 0.07802
> volume #6 level 0.07393
> show #!2 models
> hide #!2 models
> show #!1 models
> hide #!1 models
> hide #!6 models
> show #!5 models
> volume #5 level 0.06299
> volume #5 level 0.06261
> lighting soft
> volume #5 level 0.0776
Drag select of 5 Hexamer
> volume #5 level 0.08337
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3rc202111031842 (2021-11-03)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/Dounia/Downloads/cryosparc_P11_J1298_003_volume_map (1).mrc"
Opened cryosparc_P11_J1298_003_volume_map (1).mrc as #1, grid size
448,448,448, pixel 0.656, shown at level 0.0395, step 2, values float32
OpenGL version: 4.1 INTEL-14.7.18
OpenGL renderer: Intel(R) Iris(TM) Graphics 540
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro13,1
Processor Name: Dual-Core Intel Core i7
Processor Speed: 2,4 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
Boot ROM Version: 429.140.8.0.0
SMC Version (system): 2.36f102
Software:
System Software Overview:
System Version: macOS 10.15.7 (19H1323)
Kernel Version: Darwin 19.6.0
Time since boot: 1 day 7:44
Graphics/Displays:
Intel Iris Graphics 540:
Chipset Model: Intel Iris Graphics 540
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x1926
Revision ID: 0x000a
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.5.30
cftime: 1.5.1.1
charset-normalizer: 2.0.7
ChimeraX-AddCharge: 1.1.5
ChimeraX-AddH: 2.1.10
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.30.2
ChimeraX-AtomicLibrary: 4.1.5
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3rc202111031842
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.2
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.5.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.2.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.7.3
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.0
ParmEd: 3.2.0
parso: 0.8.2
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.22
psutil: 5.8.0
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.4
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.2
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.1.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 4 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset |
comment:2 by , 4 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Graphics hardware encountered an error and was reset → Graphics driver crash, macOS 10.15.7, Intel Iris Graphics 540 |
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Apple graphics driver crash.