![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Closed 4 years ago
#5046 closed defect (can't reproduce)
Crash with trashed stack
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.15.7-x86_64-i386-64bit
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [12014]
Path: /private/var/folders/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.2.5 (1.2.5.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [12014]
User ID: 501
Date/Time: 2021-08-10 15:00:09.435 +0100
OS Version: Mac OS X 10.15.7 (19H1030)
Report Version: 12
Bridge OS Version: 5.3 (18P4556)
Anonymous UUID: F1FBEFC9-0C10-FE44-14D5-F6A808F82B0E
Sleep/Wake UUID: 908CC66C-ACF6-44D7-84CE-416B77597D91
Time Awake Since Boot: 96000 seconds
Time Since Wake: 11000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain
Exception Type: EXC_BAD_ACCESS (SIGILL)
Exception Codes: KERN_MEMORY_ERROR at 0x0000000101fd95d0
Exception Note: EXC_CORPSE_NOTIFY
Termination Signal: Illegal instruction: 4
Termination Reason: Namespace SIGNAL, Code 0x4
Terminating Process: ChimeraX [12014]
VM Regions Near 0x101fd95d0:
shared memory 0000000101e33000-0000000101e34000 [ 4K] r--/r-- SM=SHM
--> mapped file 0000000101e34000-000000010206b000 [ 2268K] r-x/rwx SM=COW Object_id=aaca7f95
mapped file 000000010206b000-00000001020a5000 [ 232K] rw-/rwx SM=COW Object_id=a7442295
Thread 0 Crashed:: CrBrowserMain
0 ??? 0x0000000101fd95d0 0 + 4328363472
1 ChimeraX 000000000000000000 0 + 0
2 ??? 0x0000020000000200 0 + 2199023256064
3 ChimeraX 000000000000000000 0 + 0
4 ??? 0x0800000008000000 0 + 576460752437641216
5 ??? 0x0000040000000400 0 + 4398046512128
6 ChimeraX 000000000000000000 0 + 0
7 ??? 0x0000000101f62e90 0 + 4327878288
8 ??? 0x00007f83cce3c7f0 0 + 140204054923248
9 ChimeraX 000000000000000000 0 + 0
10 ChimeraX 000000000000000000 0 + 0
11 ChimeraX 000000000000000000 0 + 0
12 ChimeraX 000000000000000000 0 + 0
13 ChimeraX 000000000000000000 0 + 0
14 ??? 0x0000000101e96020 0 + 4327039008
15 ChimeraX 000000000000000000 0 + 0
16 ??? 0x00000000000c5600 0 + 808448
17 ??? 0x616d2061206e6920 0 + 7020302995668494624
18 ??? 0x0000000101eab9b0 0 + 4327127472
19 ChimeraX 000000000000000000 0 + 0
20 ChimeraX 000000000000000000 0 + 0
21 ChimeraX 000000000000000000 0 + 0
22 ??? 0x7274746120656e69 0 + 8247344778126388841
23 ??? 0x6e6174736e69206e 0 + 7953766456035450990
24 ??? 0x73202020200a6649 0 + 8295665835965048393
25 ??? 0x20726f7272696d20 0 + 2338053693895175456
26 ChimeraX 000000000000000000 0 + 0
27 ??? 0x00007f83ce199a60 0 + 140204075227744
28 ??? 0x0000000101ea9460 0 + 4327117920
29 ChimeraX 000000000000000000 0 + 0
30 ChimeraX 000000000000000000 0 + 0
31 ??? 0x00007f83cce6af70 0 + 140204055113584
32 ??? 0x6f74636166202020 0 + 8031153305484795936
33 ??? 0x3e20202020202020 0 + 4476613351956291616
34 ??? 0x00007f83ce1f6d80 0 + 140204075609472
35 ??? 0x0000000000000006 0 + 6
Thread 1:
0 ??? 0x00007fff71063882 0 + 140735089621122
1 ??? 0x0000000102f4527b 0 + 4344533627
2 ??? 0x00007fff71124109 0 + 140735090409737
3 ??? 0x00007fff7111fb8b 0 + 140735090391947
Thread 2:
0 ??? 0x00007fff71063882 0 + 140735089621122
1 ??? 0x0000000102f4527b 0 + 4344533627
2 ??? 0x00007fff71124109 0 + 140735090409737
3 ??? 0x00007fff7111fb8b 0 + 140735090391947
Thread 3:
0 ??? 0x00007fff71063882 0 + 140735089621122
1 ??? 0x0000000102f4527b 0 + 4344533627
2 ??? 0x00007fff71124109 0 + 140735090409737
3 ??? 0x00007fff7111fb8b 0 + 140735090391947
Thread 4:: ThreadPoolServiceThread
0 ??? 0x00007fff71069b96 0 + 140735089646486
1 ??? 0x000000011581bcc7 0 + 4655791303
2 ??? 0x00000001157a462b 0 + 4655302187
3 ??? 0x00000001157687cb 0 + 4655056843
4 ??? 0x00000001157afa94 0 + 4655348372
5 ??? 0x00000001157c3a7d 0 + 4655430269
6 ??? 0x000000011580ce07 0 + 4655730183
7 ??? 0x00007fff71124109 0 + 140735090409737
8 ??? 0x00007fff7111fb8b 0 + 140735090391947
Thread 5:: ThreadPoolBackgroundWorker
0 ??? 0x00007fff71060dfa 0 + 140735089610234
1 ??? 0x00007fff71061170 0 + 140735089611120
2 ??? 0x0000000115811492 0 + 4655748242
3 ??? 0x00000001157b9778 0 + 4655388536
4 ??? 0x00000001157ba150 0 + 4655391056
5 ??? 0x00000001157b9c44 0 + 4655389764
6 ??? 0x000000011580ce07 0 + 4655730183
7 ??? 0x00007fff71124109 0 + 140735090409737
8 ??? 0x00007fff7111fb8b 0 + 140735090391947
Thread 6:: Chrome_IOThread
0 ??? 0x00007fff71069b96 0 + 140735089646486
1 ??? 0x000000011581bcc7 0 + 4655791303
2 ??? 0x00000001157a462b 0 + 4655302187
3 ??? 0x00000001157687cb 0 + 4655056843
4 ??? 0x00000001196e8f06 0 + 4721643270
5 ??? 0x00000001157c3a7d 0 + 4655430269
6 ??? 0x000000011580ce07 0 + 4655730183
7 ??? 0x00007fff71124109 0 + 140735090409737
8 ??? 0x00007fff7111fb8b 0 + 140735090391947
Thread 7:: NetworkConfigWatcher
0 ??? 0x00007fff71060dfa 0 + 140735089610234
1 ??? 0x00007fff71061170 0 + 140735089611120
2 ??? 0x0000000115811492 0 + 4655748242
3 ??? 0x00000001158112cf 0 + 4655747791
4 ??? 0x00000001157391db 0 + 4654862811
5 ??? 0x00000001157a462b 0 + 4655302187
6 ??? 0x00000001157687cb 0 + 4655056843
7 ??? 0x00000001157c3a7d 0 + 4655430269
8 ??? 0x000000011580ce07 0 + 4655730183
9 ??? 0x00007fff71124109 0 + 140735090409737
10 ??? 0x00007fff7111fb8b 0 + 140735090391947
Thread 8:: CompositorTileWorker1
0 ??? 0x00007fff71063882 0 + 140735089621122
1 ??? 0x0000000115808e18 0 + 4655713816
2 ??? 0x0000000116ac05f8 0 + 4675339768
3 ??? 0x000000011580ce07 0 + 4655730183
4 ??? 0x00007fff71124109 0 + 140735090409737
5 ??? 0x00007fff7111fb8b 0 + 140735090391947
Thread 9:: Chrome_InProcGpuThread
0 ??? 0x00007fff71060dfa 0 + 140735089610234
1 ??? 0x00007fff71061170 0 + 140735089611120
2 ??? 0x0000000115811492 0 + 4655748242
3 ??? 0x000000011573920f 0 + 4654862863
4 ??? 0x00000001157a462b 0 + 4655302187
5 ??? 0x00000001157687cb 0 + 4655056843
6 ??? 0x00000001157c3a7d 0 + 4655430269
7 ??? 0x000000011580ce07 0 + 4655730183
8 ??? 0x00007fff71124109 0 + 140735090409737
9 ??? 0x00007fff7111fb8b 0 + 140735090391947
Thread 10:: Chrome_ChildIOThread
0 ??? 0x00007fff71069b96 0 + 140735089646486
1 ??? 0x000000011581bcc7 0 + 4655791303
2 ??? 0x00000001157a462b 0 + 4655302187
3 ??? 0x00000001157687cb 0 + 4655056843
4 ??? 0x00000001157c3a7d 0 + 4655430269
5 ??? 0x000000011580ce07 0 + 4655730183
6 ??? 0x00007fff71124109 0 + 140735090409737
7 ??? 0x00007fff7111fb8b 0 + 140735090391947
Thread 11:: VizCompositorThread
0 ??? 0x00007fff71060dfa 0 + 140735089610234
1 ??? 0x00007fff71061170 0 + 140735089611120
2 ??? 0x0000000115811492 0 + 4655748242
3 ??? 0x00000001158112cf 0 + 4655747791
4 ??? 0x00000001157391db 0 + 4654862811
5 ??? 0x00000001157a462b 0 + 4655302187
6 ??? 0x00000001157687cb 0 + 4655056843
7 ??? 0x00000001157c3a7d 0 + 4655430269
8 ??? 0x000000011580ce07 0 + 4655730183
9 ??? 0x00007fff71124109 0 + 140735090409737
10 ??? 0x00007fff7111fb8b 0 + 140735090391947
Thread 12:: NetworkConfigWatcher
0 ??? 0x00007fff71060dfa 0 + 140735089610234
1 ??? 0x00007fff71061170 0 + 140735089611120
2 ??? 0x0000000115811492 0 + 4655748242
3 ??? 0x00000001158112cf 0 + 4655747791
4 ??? 0x00000001157391db 0 + 4654862811
5 ??? 0x00000001157a462b 0 + 4655302187
6 ??? 0x00000001157687cb 0 + 4655056843
7 ??? 0x00000001157c3a7d 0 + 4655430269
8 ??? 0x000000011580ce07 0 + 4655730183
9 ??? 0x00007fff71124109 0 + 140735090409737
10 ??? 0x00007fff7111fb8b 0 + 140735090391947
Thread 13:: NetworkConfigWatcher
0 ??? 0x00007fff71060dfa 0 + 140735089610234
1 ??? 0x00007fff71061170 0 + 140735089611120
2 ??? 0x0000000115811492 0 + 4655748242
3 ??? 0x00000001158112cf 0 + 4655747791
4 ??? 0x00000001157391db 0 + 4654862811
5 ??? 0x00000001157a462b 0 + 4655302187
6 ??? 0x00000001157687cb 0 + 4655056843
7 ??? 0x00000001157c3a7d 0 + 4655430269
8 ??? 0x000000011580ce07 0 + 4655730183
9 ??? 0x00007fff71124109 0 + 140735090409737
10 ??? 0x00007fff7111fb8b 0 + 140735090391947
Thread 14:: ThreadPoolSingleThreadForegroundBlocking0
0 ??? 0x00007fff71060dfa 0 + 140735089610234
1 ??? 0x00007fff71061170 0 + 140735089611120
2 ??? 0x0000000115811492 0 + 4655748242
3 ??? 0x00000001158112cf 0 + 4655747791
4 ??? 0x00000001157b976a 0 + 4655388522
5 ??? 0x00000001157ba150 0 + 4655391056
6 ??? 0x00000001157b9d34 0 + 4655390004
7 ??? 0x000000011580ce07 0 + 4655730183
8 ??? 0x00007fff71124109 0 + 140735090409737
9 ??? 0x00007fff7111fb8b 0 + 140735090391947
Thread 15:: MemoryInfra
0 ??? 0x00007fff71060dfa 0 + 140735089610234
1 ??? 0x00007fff71061170 0 + 140735089611120
2 ??? 0x0000000115811492 0 + 4655748242
3 ??? 0x00000001158112cf 0 + 4655747791
4 ??? 0x00000001157391db 0 + 4654862811
5 ??? 0x00000001157a462b 0 + 4655302187
6 ??? 0x00000001157687cb 0 + 4655056843
7 ??? 0x00000001157c3a7d 0 + 4655430269
8 ??? 0x000000011580ce07 0 + 4655730183
9 ??? 0x00007fff71124109 0 + 140735090409737
10 ??? 0x00007fff7111fb8b 0 + 140735090391947
Thread 16:: NetworkConfigWatcher
0 ??? 0x00007fff71060dfa 0 + 140735089610234
1 ??? 0x00007fff71061170 0 + 140735089611120
2 ??? 0x0000000115811492 0 + 4655748242
3 ??? 0x00000001158112cf 0 + 4655747791
4 ??? 0x00000001157391db 0 + 4654862811
5 ??? 0x00000001157a462b 0 + 4655302187
6 ??? 0x00000001157687cb 0 + 4655056843
7 ??? 0x00000001157c3a7d 0 + 4655430269
8 ??? 0x000000011580ce07 0 + 4655730183
9 ??? 0x00007fff71124109 0 + 140735090409737
10 ??? 0x00007fff7111fb8b 0 + 140735090391947
Thread 17:: com.apple.NSEventThread
0 ??? 0x00007fff71060dfa 0 + 140735089610234
1 ??? 0x00007fff71061170 0 + 140735089611120
2 ??? 0x00007fff370189d5 0 + 140734116235733
3 ??? 0x00007fff370174a2 0 + 140734116230306
4 ??? 0x00007fff3701691e 0 + 140734116227358
5 ??? 0x00007fff3442a954 0 + 140734070171988
6 ??? 0x00007fff71124109 0 + 140735090409737
7 ??? 0x00007fff7111fb8b 0 + 140735090391947
Thread 18:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 ??? 0x00007fff71060dfa 0 + 140735089610234
1 ??? 0x00007fff71061170 0 + 140735089611120
2 ??? 0x0000000115811492 0 + 4655748242
3 ??? 0x00000001158112cf 0 + 4655747791
4 ??? 0x00000001157b976a 0 + 4655388522
5 ??? 0x00000001157b9e3d 0 + 4655390269
6 ??? 0x00000001157b9c74 0 + 4655389812
7 ??? 0x000000011580ce07 0 + 4655730183
8 ??? 0x00007fff71124109 0 + 140735090409737
9 ??? 0x00007fff7111fb8b 0 + 140735090391947
Thread 19:: ThreadPoolForegroundWorker
0 ??? 0x00007fff71060dfa 0 + 140735089610234
1 ??? 0x00007fff71061170 0 + 140735089611120
2 ??? 0x0000000115811492 0 + 4655748242
3 ??? 0x00000001157b9778 0 + 4655388536
4 ??? 0x00000001157ba150 0 + 4655391056
5 ??? 0x00000001157b9cd4 0 + 4655389908
6 ??? 0x000000011580ce07 0 + 4655730183
7 ??? 0x00007fff71124109 0 + 140735090409737
8 ??? 0x00007fff7111fb8b 0 + 140735090391947
Thread 20:
0 ??? 0x00007fff7111fb68 0 + 140735090391912
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000101fd95d0 rbx: 0x00007f83ccc012b0 rcx: 0x00007f83ccc01248 rdx: 0x00007f83ccc012b0
rdi: 0x000000000000000a rsi: 0x00007f83ccc01248 rbp: 0x00007f83ccc007e0 rsp: 0x00007f83ccc007d8
r8: 0x00007f83ccc012b0 r9: 0xfe9fc48dfa73d536 r10: 0x000060000338c530 r11: 0x000060000338c528
r12: 0xfe9fc48dfa73d536 r13: 0x0000000000000040 r14: 0x0000000000000000 r15: 0x000000011ffe79e0
rip: 0x0000000101fd95d0 rfl: 0x0000000000010202 cr2: 0x0000000101fd95d0
Logical CPU: 4
Error Code: 0x00000014 (no mapping for user instruction read)
Trap Number: 14
Binary Images:
0 - 0xffffffffffffffff +ChimeraX (???) /private/var/folders/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
0x10863e000 - 0x1086cff47 dyld (750.6) /usr/lib/dyld
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 19
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 77132
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=808K resident=0K(0%) swapped_out_or_unallocated=808K(100%)
Writable regions: Total=1.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.0G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 1
CG backing stores 992K 2
CG image 144K 11
CoreAnimation 96K 10
CoreGraphics 8K 1
CoreImage 24K 2
CoreUI image data 2468K 19
Foundation 4K 1
Kernel Alloc Once 8K 1
MALLOC 631.5M 571
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)
Mach message 24K 3
OpenGL GLSL 384K 5
STACK GUARD 80K 20
Stack 130.7M 21
Stack Guard 56.0M 1
VM_ALLOCATE 128.5M 72
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 216K 2
__DATA_CONST 20K 1
__LINKEDIT 224K 1
__TEXT 584K 1
dylib 2108K 26
dylib (reserved) 28K 4 reserved VM address space (unallocated)
mapped file 736.1M 450
shared memory 4176K 36
=========== ======= =======
TOTAL 1.8G 1274
TOTAL, minus reserved VM space 1.7G 1274
System Profile:
Network Service: Wi-Fi, AirPort, en0
bridge_os_version: Bridge OS 5.3 (18P4556)
Boot Volume File System Type: apfs
bridge_model: iBridge2,15
Memory Module: BANK 0/ChannelA-DIMM0, 4 GB, LPDDR4X, 3733 MHz, Micron, MT53E512M64D4NW-053
Memory Module: BANK 2/ChannelB-DIMM0, 4 GB, LPDDR4X, 3733 MHz, Micron, MT53E512M64D4NW-053
USB Device: USB 3.1 Bus
USB Device: Mobile SSD
USB Device: USB 3.1 Bus
USB Device: Apple T2 Bus
USB Device: Touch Bar Backlight
USB Device: Apple Internal Keyboard / Trackpad
USB Device: Headset
USB Device: Ambient Light Sensor
USB Device: FaceTime HD Camera (Built-in)
USB Device: Apple T2 Controller
Thunderbolt Bus: MacBook Air, Apple Inc., 85.0
Model: MacBookAir9,1, BootROM 1554.100.64.0.0 (iBridge: 18.16.14556.0.0,0), 4 processors, Quad-Core Intel Core i5, 1.1 GHz, 8 GB, SMC
Graphics: kHW_IntelIrisPlusGraphicsItem, Intel Iris Plus Graphics, spdisplays_builtin
AirPort: spairport_wireless_card_type_airport_extreme, wl0: Oct 27 2020 18:59:37 version 16.20.192.29.3.6.79 FWID 01-7151e6e3
Bluetooth: Version 7.0.6f8, 3 services, 27 devices, 1 incoming serial ports
Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-14.7.13
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: MacBookAir9,1
Processor Name: Quad-Core Intel Core i5
Processor Speed: 1.1 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 512 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
Boot ROM Version: 1554.100.64.0.0 (iBridge: 18.16.14556.0.0,0)
Software:
System Software Overview:
System Version: macOS 10.15.7 (19H1030)
Kernel Version: Darwin 19.6.0
Time since boot: 21:04
Graphics/Displays:
Intel Iris Plus Graphics:
Chipset Model: Intel Iris Plus Graphics
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x8a51
Revision ID: 0x0007
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.5.0
chardet: 3.0.4
ChimeraX-AddCharge: 1.0.1
ChimeraX-AddH: 2.1.6
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.13.2
ChimeraX-AtomicLibrary: 3.1.3
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.2.1
ChimeraX-CommandLine: 1.1.4
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.5
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.1.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.3
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.0.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.2.1
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0.1
ChimeraX-ModelPanel: 1.0.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.1
ChimeraX-OpenCommand: 1.5
ChimeraX-PDB: 2.4.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.1
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.3.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.7.6
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 5.0.9
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 2.0.1
matplotlib: 3.3.2
matplotlib-inline: 0.1.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.3
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.9
ParmEd: 3.2.0
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 21.0.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.18
psutil: 5.7.2
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pyzmq: 22.0.3
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
six: 1.15.0
snowballstemmer: 2.1.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 4 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash with trashed stack |
comment:2 by , 4 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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