The following bug report has been submitted:
Platform: Windows-10-10.0.18362
ChimeraX Version: 1.2.dev202103272340 (2021-03-27 23:40:01 UTC)
Description
opening an old session file that used to work. Got up to 7.3 GB of files opened before it crashed.
Log:
UCSF ChimeraX version: 1.2.dev202103272340 (2021-03-27)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
Unable to load numpy_formathandler accelerator from OpenGL_accelerate
> open X:/TOXOPLASMA/CONOID_HEIGHT/protruded-eman/TPE-11-axy150u8.hdf
Opened TPE-11-axy150u8.hdf as #1, grid size 1024,1024,450, pixel 14.2, shown
at step 1, values uint8
> volume #1 region 0,0,0,1023,1023,449 step 4
> volume #1 region 0,0,0,1023,1023,449 step 4
> close session
> open X:/TOXOPLASMA/CONOID_HEIGHT/protruded-eman/TPE-11-axy150u8.hdf
Opened TPE-11-axy150u8.hdf as #1, grid size 1024,1024,450, pixel 14.2, shown
at step 1, values uint8
> volume #1 region 0,0,0,1023,1023,449 step 4
> volume #1 region 0,0,0,1023,1023,449 step 4
> volume #1 step 2
> volume #1 level 81
> volume #1 change image level 73,0 level 86,0.8 level 159,1
> vr nearClipDistance 0.4
started SteamVR rendering
> surface dust #1 size 200
> color height #1 center 0,0,0 axis z palette rainbow
> close session
> open X:/TOXOPLASMA/CONOID_HEIGHT/protruded-eman/TPE-11-axy150u8.hdf
Opened TPE-11-axy150u8.hdf as #101, grid size 1024,1024,450, pixel 14.2, shown
at step 1, values uint8
Fetching compressed palette rainbowvr from
http://www.colourlovers.com/api/palettes?keywords=rainbowvr&format=json&numResults=100
Could not find palette rainbowvr at COLOURlovers.com using keyword search
> close session
> vr false
> open X:/TOXOPLASMA/CONOID_HEIGHT/protruded-eman/TPE-11-axy150u8.hdf
Opened TPE-11-axy150u8.hdf as #1, grid size 1024,1024,450, pixel 14.2, shown
at step 1, values uint8
> volume #1 region 0,0,0,1023,1023,449 step 4
> volume #1 region 0,0,0,1023,1023,449 step 4
> volume #1 step 2
> volume #1 level 81
> volume #1 change image level 73,0 level 86,0.8 level 159,1
> color height #1 center 0,0,0 axis z palette rainbow
> surface dust #1 size 200
> surface dust #1 size 300
> vr nearClipDistance 0.4
started SteamVR rendering
> ui mousemode right "resize markers"
VR mode mark point
VR mode link markers
> vr false
> vr true
started SteamVR rendering
VR mode mark point
> marker #2 position 8354,6618,3708 color white radius 100
> marker #2 position 5740,6614,4625 color white radius 100
> marker link #2:2,1 color #aa00ff radius 20
> marker #2 position 8309,7018,3304 color white radius 100
> marker #2 position 5758,7490,4342 color white radius 100
> marker #2 position 5769,7499,4381 color white radius 100
> marker link #2:5,3 color #aa00ff radius 20
> marker #2 position 8321,6102,3650 color white radius 100
> marker #2 position 6187,5571,4619 color white radius 100
> marker link #2:7,6 color #aa00ff radius 20
> marker #2 position 8315,5470,3125 color white radius 100
> marker #2 position 6114,4279,3844 color white radius 100
> marker link #2:9,8 color #aa00ff radius 20
> marker #2 position 6875,6236,1824 color white radius 100
> marker #2 position 5388,6059,2343 color white radius 100
> marker link #2:11,10 color #aa00ff radius 20
> marker #2 position 7613,8052,2096 color white radius 100
> marker #2 position 6034,8969,2888 color white radius 100
> marker link #2:13,12 color #aa00ff radius 20
> marker #2 position 7206,5441,1951 color white radius 100
> marker #2 position 5476,4985,2474 color white radius 100
> marker link #2:15,14 color #aa00ff radius 20
> vr false
> hide #!1 models
> select #2
15 atoms, 7 bonds, 15 residues, 1 model selected
> ~select #2
Nothing selected
> show #!1 models
> save X:/TOXOPLASMA/CONOID_HEIGHT/protruded-eman/TPE-11-markers-1.cxs
> hide #!1 models
> close session
> open X:/TOXOPLASMA/CONOID_HEIGHT/protruded-eman/TPE-18-axy150u8.hdf
Opened TPE-18-axy150u8.hdf as #1, grid size 1024,1024,500, pixel 14.2, shown
at step 1, values uint8
> volume #1 region 0,0,0,1023,1023,499 step 4
> volume #1 region 0,0,0,1023,1023,499 step 4
> volume #1 step 2
> volume #1 level 73
> volume #1 change image level 61.01,0 level 77.99,0.8 level 173,1
> color height #1 center 0,0,0 axis z palette rainbow
> surface dust #1 size 300
> vr true
started SteamVR rendering
> marker #2 position 8387,4129,2280 color white radius 100
> marker #2 position 7550,6378,2569 color white radius 100
> marker link #2:17,16 color #aa00ff radius 20
> marker #2 position 7903,3912,2433 color white radius 100
> marker #2 position 6750,6187,2462 color white radius 100
> marker link #2:19,18 color #aa00ff radius 20
> marker #2 position 7526,3744,2693 color white radius 100
> marker #2 position 6052,5879,2637 color white radius 100
> marker link #2:21,20 color #aa00ff radius 20
> marker #2 position 7176,3525,3121 color white radius 100
> marker #2 position 5728,5541,3494 color white radius 100
> marker link #2:23,22 color #aa00ff radius 20
> marker #2 position 7131,3449,3727 color white radius 100
> marker #2 position 5825,5509,4012 color white radius 100
> marker link #2:25,24 color #aa00ff radius 20
> marker #2 position 9987,4969,3333 color white radius 100
> marker #2 position 9465,7273,3669 color white radius 100
> marker link #2:27,26 color #aa00ff radius 20
> marker #2 position 9111,4492,2775 color white radius 100
> marker #2 position 9234,7291,2436 color white radius 100
> marker link #2:29,28 color #aa00ff radius 20
> marker #2 position 9761,4819,4040 color white radius 100
> marker #2 position 9026,7144,4848 color white radius 100
> marker link #2:31,30 color #aa00ff radius 20
> vr false
> hide #!1 models
> select #2
16 atoms, 8 bonds, 16 residues, 1 model selected
> ~select #2
Nothing selected
> show #!1 models
> save X:/TOXOPLASMA/CONOID_HEIGHT/protruded-eman/TPE-18-markers-1.cxs
> close session
> open X:/TOXOPLASMA/CONOID_HEIGHT/protruded-eman/TPE-27-axy150u8.hdf
Opened TPE-27-axy150u8.hdf as #1, grid size 1024,1024,300, pixel 14.2, shown
at step 1, values uint8
> volume #1 region 0,0,0,1023,1023,299 step 4
> volume #1 region 0,0,0,1023,1023,299 step 4
> volume #1 step 2
> volume #1 level 79
> volume #1 change image level 69,0 level 84,0.8 level 133,1
> volume #1 level 78
> volume #1 level 77
> color height #1 center 0,0,0 axis z palette rainbow
> surface dust #1 size 300
> volume #1 level 76
> volume #1 level 77
> vr true
started SteamVR rendering
> marker #2 position 5563,8048,1569 color white radius 100
> marker #2 position 7521,6291,1484 color white radius 100
> marker link #2:33,32 color #aa00ff radius 20
> marker #2 position 5901,8536,1589 color white radius 100
> marker #2 position 8118,6982,1407 color white radius 100
> marker link #2:35,34 color #aa00ff radius 20
> marker #2 position 6288,9106,1750 color white radius 100
> marker #2 position 8602,7852,1634 color white radius 100
> marker link #2:37,36 color #aa00ff radius 20
> marker #2 position 6474,9501,2036 color white radius 100
> marker #2 position 9206,8655,1794 color white radius 100
> marker link #2:39,38 color #aa00ff radius 20
> marker #2 position 4982,7424,1652 color white radius 100
> marker #2 position 6991,5429,1559 color white radius 100
> marker link #2:41,40 color #aa00ff radius 20
> marker #2 position 4596,7062,2124 color white radius 100
> marker #2 position 6268,4803,1794 color white radius 100
> marker link #2:43,42 color #aa00ff radius 20
> marker #2 position 5324,6753,3030 color white radius 100
> marker #2 position 6642,5131,3108 color white radius 100
> marker link #2:45,44 color #aa00ff radius 20
> marker #2 position 5960,7155,3093 color white radius 100
> marker #2 position 7547,5540,3205 color white radius 100
> marker link #2:47,46 color #aa00ff radius 20
> marker #2 position 6414,7731,3017 color white radius 100
> marker #2 position 8421,6326,3174 color white radius 100
> marker link #2:49,48 color #aa00ff radius 20
> marker #2 position 6720,8490,2880 color white radius 100
> marker #2 position 8951,7628,2957 color white radius 100
> marker link #2:51,50 color #aa00ff radius 20
> marker #2 position 6738,9180,2827 color white radius 100
> marker #2 position 9364,8694,2599 color white radius 100
> marker link #2:53,52 color #aa00ff radius 20
> hide #!1 models
> marker #2 position 9515,7259,3251 color white radius 100
VR mode delete markers
> marker delete #2:54
> vr false
> show #!1 models
> save X:/TOXOPLASMA/CONOID_HEIGHT/protruded-eman/TPE-27-markers-1.cxs
> close session
> open X:/TOXOPLASMA/CONOID_HEIGHT/protruded-eman/TPE-32-axy150u8.hdf
Opened TPE-32-axy150u8.hdf as #1, grid size 1024,1024,300, pixel 14.2, shown
at step 1, values uint8
> volume #1 region 0,0,0,1023,1023,299 step 4
> volume #1 region 0,0,0,1023,1023,299 step 4
> volume #1 step 2
> volume #1 level 95
> volume #1 change image level 81.99,0 level 107,0.8 level 235,1
> volume #1 level 94
> color height #1 center 0,0,0 axis z palette rainbow
> surface dust #1 size 300
> vr true
started SteamVR rendering
> marker #2 position 6693,6835,1065 color white radius 100
> marker #2 position 9457,7741,1128 color white radius 100
> marker link #2:56,55 color #aa00ff radius 20
> marker #2 position 6377,7293,1094 color white radius 100
> marker #2 position 9100,8556,1167 color white radius 100
> marker link #2:58,57 color #aa00ff radius 20
> marker #2 position 6129,7718,1199 color white radius 100
> marker #2 position 8741,9318,1132 color white radius 100
> marker link #2:60,59 color #aa00ff radius 20
> marker #2 position 5741,8102,1380 color white radius 100
> marker #2 position 8191,9961,1449 color white radius 100
> marker link #2:62,61 color #aa00ff radius 20
> marker #2 position 6865,6228,1136 color white radius 100
> marker #2 position 9583,7036,1135 color white radius 100
> marker link #2:64,63 color #aa00ff radius 20
> marker #2 position 7074,5377,1177 color white radius 100
> marker #2 position 9659,6089,1343 color white radius 100
> marker link #2:66,65 color #aa00ff radius 20
> marker #2 position 6702,6913,2644 color white radius 100
> marker #2 position 9483,8672,2829 color white radius 100
> marker link #2:68,67 color #aa00ff radius 20
> marker #2 position 6999,6141,2552 color white radius 100
> marker #2 position 9834,8027,3027 color white radius 100
> marker link #2:70,69 color #aa00ff radius 20
> marker #2 position 7179,5428,2481 color white radius 100
> marker #2 position 1.033e+04,6798,2944 color white radius 100
> marker link #2:72,71 color #aa00ff radius 20
> marker #2 position 6335,7475,2544 color white radius 100
> marker #2 position 8966,9644,2954 color white radius 100
> marker link #2:74,73 color #aa00ff radius 20
> marker #2 position 5742,8274,2431 color white radius 100
> marker #2 position 8503,1.045e+04,2650 color white radius 100
> marker link #2:76,75 color #aa00ff radius 20
> marker #2 position 5479,8643,2136 color white radius 100
> marker #2 position 8238,1.071e+04,2096 color white radius 100
> marker link #2:78,77 color #aa00ff radius 20
> marker #2 position 7442,4841,2208 color white radius 100
> marker #2 position 1.039e+04,6031,2569 color white radius 100
> marker link #2:80,79 color #aa00ff radius 20
> vr false
> hide #!1 models
> vr true
started SteamVR rendering
> vr false
> show #!1 models
> hide #!1 models
> select #2
26 atoms, 13 bonds, 26 residues, 1 model selected
> select #1
3 models selected
> select #1
3 models selected
> show #!1 models
> select #1
3 models selected
> select clear
> save X:/TOXOPLASMA/CONOID_HEIGHT/protruded-eman/TPE-2732-markers-1.cxs
> close session
> open X:\7-10-2019\TOXOPLASMA\session08.cxs format session
Opened toxo29-r-56.hdf as #1, grid size 927,959,305, pixel 14.2, shown at step
1, values float32
Opened tomo_conoid_bin4_1_erase.mrc as #2, grid size 927,959,305, pixel
14.2,14.2,14.2, shown at level 1.7, step 1, values float32
Opened tomo_submit_erase1.mrc as #3, grid size 927,959,305, pixel
14.2,14.2,14.2, shown at level 0.7, step 1, values float32
Opened tomo_apr_bin4_2.hdf as #4, grid size 927,959,305, pixel 14.2, shown at
level 3.5, step 1, values float32
Opened tomo_MS_bin4_1_erase.mrc as #5, grid size 927,959,305, pixel
14.2,14.2,14.2, shown at level 1, step 1, values float32
Opened tomo_masksecrV_erase.mrc as #6, grid size 927,959,305, pixel
14.2,14.2,14.2, shown at level 0.8, step 1, values float32
Opened tomo_ppr_bin4_1_erase.mrc as #7, grid size 927,959,305, pixel
14.2,14.2,14.2, shown at level 1.2, step 1, values float32
Opened tomo_memb_bin4_1_erase.mrc as #8, grid size 927,959,305, pixel
14.2,14.2,14.2, shown at level 0.5, step 1, values float32
Opened tomo_intraconoid_erase.mrc as #9, grid size 927,959,305, pixel
14.2,14.2,14.2, shown at level 0.37, step 1, values float32
opened ChimeraX session
Error processing trigger "graphics update":
Could not allocate 1034 Mbyte array of size 927,959,305 and type float32.
An error occurred in drawing the scene. Redrawing graphics is now stopped to
avoid a continuous stream of error messages. To restart graphics use the
command "graphics restart" after changing the settings that caused the error.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.dev202103272340\bin\lib\site-
packages\chimerax\core\updateloop.py", line 73, in draw_new_frame
view.draw(check_for_changes = False)
File "C:\Program Files\ChimeraX 1.2.dev202103272340\bin\lib\site-
packages\chimerax\graphics\view.py", line 165, in draw
self._draw_scene(camera, drawings)
File "C:\Program Files\ChimeraX 1.2.dev202103272340\bin\lib\site-
packages\chimerax\graphics\view.py", line 233, in _draw_scene
draw_opaque(r, opaque_drawings)
File "C:\Program Files\ChimeraX 1.2.dev202103272340\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 1498, in draw_opaque
_draw_multiple(drawings, renderer, Drawing.OPAQUE_DRAW_PASS)
File "C:\Program Files\ChimeraX 1.2.dev202103272340\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 1511, in _draw_multiple
d.draw(renderer, draw_pass)
File "C:\Program Files\ChimeraX 1.2.dev202103272340\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 751, in draw
self.draw_self(renderer, draw_pass)
File "C:\Program Files\ChimeraX 1.2.dev202103272340\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 758, in draw_self
self._draw_geometry(renderer, opaque_only = any_transp)
File "C:\Program Files\ChimeraX 1.2.dev202103272340\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 785, in _draw_geometry
ds.activate_bindings(renderer)
File "C:\Program Files\ChimeraX 1.2.dev202103272340\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 1858, in activate_bindings
self.update_buffers()
File "C:\Program Files\ChimeraX 1.2.dev202103272340\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 1846, in update_buffers
b.update_buffer_data(data)
File "C:\Program Files\ChimeraX 1.2.dev202103272340\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 2632, in update_buffer_data
GL.glBufferData(btype, size, d, GL.GL_STATIC_DRAW)
File "src/latebind.pyx", line 51, in OpenGL_accelerate.latebind.Curry.__call__
File "C:\Program Files\ChimeraX 1.2.dev202103272340\bin\lib\site-
packages\OpenGL\GL\VERSION\GL_1_5.py", line 89, in glBufferData
return baseOperation( target, size, data, usage )
File "src/latebind.pyx", line 39, in
OpenGL_accelerate.latebind.LateBind.__call__
File "src/wrapper.pyx", line 318, in
OpenGL_accelerate.wrapper.Wrapper.__call__
File "src/wrapper.pyx", line 311, in
OpenGL_accelerate.wrapper.Wrapper.__call__
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1285,
description = b'out of memory',
baseOperation = glBufferData,
pyArgs = (
34963,
74132256,
array([[ 0, 4, 2],
[ 3, 4, 0],
[ 1, 2, 4],
.....,
GL_STATIC_DRAW,
),
cArgs = (
34963,
74132256,
array([[ 0, 4, 2],
[ 3, 4, 0],
[ 1, 2, 4],
.....,
GL_STATIC_DRAW,
),
cArguments = (
34963,
74132256,
array([[ 0, 4, 2],
[ 3, 4, 0],
[ 1, 2, 4],
.....,
GL_STATIC_DRAW,
)
)
OpenGL version: 3.3.0 NVIDIA 456.71
OpenGL renderer: GeForce GTX 1080/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: ASUS
Model: All Series
OS: Microsoft Windows 10 Pro (Build 18363)
Memory: 17,086,476,288
MaxProcessMemory: 137,438,953,344
CPU: 16 Intel(R) Core(TM) i7-6900K CPU @ 3.20GHz
OSLanguage: en-US
Locale: ('en_US', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.4.1
chardet: 3.0.4
ChimeraX-AddCharge: 1.0
ChimeraX-AddH: 2.1.4
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.12
ChimeraX-AtomicLibrary: 3.0
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.2.1
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.dev202103272340
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.1
ChimeraX-Log: 1.1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.0.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.5
ChimeraX-PDB: 2.3.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.3
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0.1
ChimeraX-ToolshedUtils: 1.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.7.1
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 1.1.1
matplotlib: 3.3.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.3
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.9
ParmEd: 3.2.0
parso: 0.7.1
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 21.0.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.18
psutil: 5.7.2
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pywin32: 228
pyzmq: 22.0.3
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
six: 1.15.0
snowballstemmer: 2.1.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.3.0
WMI: 1.5.1
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
By "Got up to 7.3 GB of files..." do you mean Task Manager reported ChimeraX memory use of 7.3 Gbytes? That would at least mean it is not in 32-bit mode which could only go up to 4 Gbytes. Still there should be no "out of memory" error on a system 16 Gbytes physical memory when only 7.3 Gbytes are being used and 128 Gbytes of swap is available.
Same problem as #4461.