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Opened 9 years ago
Closed 9 years ago
#404 closed defect (fixed)
ChimeraX fails to start if tool is missing
| Reported by: | Tom Goddard | Owned by: | Conrad Huang |
|---|---|---|---|
| Priority: | major | Milestone: | |
| Component: | Tool Shed | Version: | |
| Keywords: | Cc: | gregc@… | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
Trying to run any older version of ChimeraX fails because it does not find the "stl" tool which is apparently in some cache file and exists in newer ChimeraX versions.
$ ~/Desktop/ChimeraX\ old/ChimeraX\ July\ 20,\ 2016.app/Contents/MacOS/ChimeraX
ERROR: Traceback (most recent call last):
File "/Users/goddard/Desktop/ChimeraX old/ChimeraX July 20, 2016.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/toolshed/init.py", line 1262, in initialize
f = self._get_module().initialize
File "/Users/goddard/Desktop/ChimeraX old/ChimeraX July 20, 2016.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/toolshed/init.py", line 1287, in _get_module
m = importlib.import_module(self._module_name)
File "/Users/goddard/Desktop/ChimeraX old/ChimeraX July 20, 2016.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/importlib/init.py", line 126, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 986, in _gcd_import
File "<frozen importlib._bootstrap>", line 969, in _find_and_load
File "<frozen importlib._bootstrap>", line 956, in _find_and_load_unlocked
ImportError: No module named 'chimerax.stl'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/Users/goddard/Desktop/ChimeraX old/ChimeraX July 20, 2016.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/runpy.py", line 170, in _run_module_as_main
"main", mod_spec)
File "/Users/goddard/Desktop/ChimeraX old/ChimeraX July 20, 2016.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/runpy.py", line 85, in _run_code
exec(code, run_globals)
File "/Users/goddard/Desktop/ChimeraX old/ChimeraX July 20, 2016.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/ChimeraX_main.py", line 548, in <module>
raise SystemExit(init(sys.argv))
File "/Users/goddard/Desktop/ChimeraX old/ChimeraX July 20, 2016.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/ChimeraX_main.py", line 387, in init
sess.toolshed.bootstrap_bundles(sess)
File "/Users/goddard/Desktop/ChimeraX old/ChimeraX July 20, 2016.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/toolshed/init.py", line 498, in bootstrap_bundles
bi.initialize(session)
File "/Users/goddard/Desktop/ChimeraX old/ChimeraX July 20, 2016.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/toolshed/init.py", line 1265, in initialize
% self.name)
chimerax.core.toolshed.ToolshedError: no initialize function found for bundle "stl"
Fixed in 2c1b0ad. When bootstrapping, remove from session tools that fail to initialize.