The following bug report has been submitted:
Platform: Linux-3.10.0-1127.13.1.el7.x86_64-x86_64-with-centos-7.8.2003-Core
ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC)
Description
Same error in this separate instance. Caused by having multiple ChimeraX instances running at the same time, perhaps?
Log:
UCSF ChimeraX version: 1.0 (2020-06-04)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 3io0 format mmcif fromDatabase pdb
3io0 title:
Crystal structure of EtuB from Clostridium kluyveri [more info...]
Chain information for 3io0 #1
---
Chain | Description
A | EtuB protein
3io0 mmCIF Assemblies
---
1| author_and_software_defined_assembly
> isolde add ligand HIS #1
> set selectionWidth 4
3io0 title:
Crystal structure of EtuB from Clostridium kluyveri [more info...]
Chain information for 3io0
---
Chain | Description
1.2/A | EtuB protein
3io0 mmCIF Assemblies
---
1| author_and_software_defined_assembly
place_ligand() was called with use_md_template=True, but no suitable template
was found. This command has been ignored.
Done loading forcefield
> select up
21 atoms, 21 bonds, 1 model selected
> delete ~sel
> select clear
> show
Traceback (most recent call last):
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
FileNotFoundError: [Errno 2] No such file or directory:
'/home/tic20/.config/ChimeraX/ui-1.tmp' -> '/home/tic20/.config/ChimeraX/ui-1'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/ui/gui.py", line
722, in resizeEvent
self.session.ui.settings.last_window_size = wh
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/settings.py", line 190, in __setattr__
ConfigFile.__setattr__(self, name, value)
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/configfile.py", line 365, in __setattr__
ConfigFile.save(self)
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/configfile.py", line 315, in save
self._config.write(f)
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/safesave.py", line 109, in __exit__
os.remove(self._tmp_filename)
FileNotFoundError: [Errno 2] No such file or directory:
'/home/tic20/.config/ChimeraX/ui-1.tmp'
FileNotFoundError: [Errno 2] No such file or directory:
'/home/tic20/.config/ChimeraX/ui-1.tmp'
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/safesave.py", line 109, in __exit__
os.remove(self._tmp_filename)
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 450.51.05
OpenGL renderer: TITAN Xp/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Dell Inc.
Model: Precision T5600
OS: CentOS Linux 7 Core
Architecture: 64bit ELF
CPU: 32 Intel(R) Xeon(R) CPU E5-2687W 0 @ 3.10GHz
Cache Size: 20480 KB
Memory:
total used free shared buff/cache available
Mem: 62G 4.3G 46G 88M 11G 57G
Swap: 4.9G 0B 4.9G
Graphics:
03:00.0 VGA compatible controller [0300]: NVIDIA Corporation GP102 [TITAN Xp] [10de:1b02] (rev a1)
Subsystem: NVIDIA Corporation Device [10de:11df]
Kernel driver in use: nvidia
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.8
Another case of saving the size of a resized window. It would make sense that this error is _possible_ with multiple ChimeraX instances open, but nonetheless how could you resize multiple instances simultaneously?