id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3615 Can't rewrite settings Tristan Croll Eric Pettersen "{{{ The following bug report has been submitted: Platform: Linux-3.10.0-1127.13.1.el7.x86_64-x86_64-with-centos-7.8.2003-Core ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC) Description Same error in this separate instance. Caused by having multiple ChimeraX instances running at the same time, perhaps? Log: UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open 3io0 format mmcif fromDatabase pdb 3io0 title: Crystal structure of EtuB from Clostridium kluyveri [more info...] Chain information for 3io0 #1 --- Chain | Description A | EtuB protein 3io0 mmCIF Assemblies --- 1| author_and_software_defined_assembly > isolde add ligand HIS #1 > set selectionWidth 4 3io0 title: Crystal structure of EtuB from Clostridium kluyveri [more info...] Chain information for 3io0 --- Chain | Description 1.2/A | EtuB protein 3io0 mmCIF Assemblies --- 1| author_and_software_defined_assembly place_ligand() was called with use_md_template=True, but no suitable template was found. This command has been ignored. Done loading forcefield > select up 21 atoms, 21 bonds, 1 model selected > delete ~sel > select clear > show Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/safesave.py"", line 97, in __exit__ os.replace(self._tmp_filename, self.name) FileNotFoundError: [Errno 2] No such file or directory: '/home/tic20/.config/ChimeraX/ui-1.tmp' -> '/home/tic20/.config/ChimeraX/ui-1' During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/ui/gui.py"", line 722, in resizeEvent self.session.ui.settings.last_window_size = wh File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/settings.py"", line 190, in __setattr__ ConfigFile.__setattr__(self, name, value) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/configfile.py"", line 365, in __setattr__ ConfigFile.save(self) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/configfile.py"", line 315, in save self._config.write(f) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/safesave.py"", line 109, in __exit__ os.remove(self._tmp_filename) FileNotFoundError: [Errno 2] No such file or directory: '/home/tic20/.config/ChimeraX/ui-1.tmp' FileNotFoundError: [Errno 2] No such file or directory: '/home/tic20/.config/ChimeraX/ui-1.tmp' File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/safesave.py"", line 109, in __exit__ os.remove(self._tmp_filename) See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 450.51.05 OpenGL renderer: TITAN Xp/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: Dell Inc. Model: Precision T5600 OS: CentOS Linux 7 Core Architecture: 64bit ELF CPU: 32 Intel(R) Xeon(R) CPU E5-2687W 0 @ 3.10GHz Cache Size: 20480 KB Memory: total used free shared buff/cache available Mem: 62G 4.3G 46G 88M 11G 57G Swap: 4.9G 0B 4.9G Graphics: 03:00.0 VGA compatible controller [0300]: NVIDIA Corporation GP102 [TITAN Xp] [10de:1b02] (rev a1) Subsystem: NVIDIA Corporation Device [10de:11df] Kernel driver in use: nvidia PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8 }}} " defect closed normal Core can't reproduce Greg Couch all ChimeraX