id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3531 ChimeraX startup: unsupported locale setting chimerax-bug-report@… Greg Couch "{{{ The following bug report has been submitted: Platform: Linux-5.4.0-40-generic-x86_64-with-debian-bullseye-sid ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC) Description (Describe the actions that caused this problem to occur here) Log: Startup Errors --- error | Bundle 'ChimeraX-Registration' custom initialization failed warning | Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 342, in initialize api._api_caller.initialize(api, session, self) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/toolshed/__init__.py"", line 1599, in initialize return cls._get_func(api, ""initialize"")(session, bi) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/registration/__init__.py"", line 41, in initialize nag(session) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/registration/nag.py"", line 28, in nag if not check_registration(logger=session.logger): File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/registration/nag.py"", line 49, in check_registration return _check_expiration(param, logger) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/registration/nag.py"", line 130, in _check_expiration expires = _expiration_time(param) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/registration/nag.py"", line 162, in _expiration_time locale.setlocale(locale.LC_TIME, save) File ""/usr/lib/ucsf-chimerax/lib/python3.7/locale.py"", line 608, in setlocale return _setlocale(category, locale) locale.Error: unsupported locale setting UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/media/jitesh/Windows/Users/jites/Desktop/Dr. > Vikram/ERK1/ERK1_result.receptor.pdbqt"" Chain information for ERK1_result.receptor.pdbqt #1 --- Chain | Description A | No description available Opened ERK1_result.receptor.pdbqt containing 1 structures (3489 atoms, 3555 bonds) > ui tool show ViewDockX No suitable models found for ViewDockX > ui tool show ViewDockX No suitable models found for ViewDockX > open ""/media/jitesh/Windows/Users/jites/Desktop/Dr. > Vikram/ERK1/ERK1_result.pdbqt"" Summary of feedback from opening /media/jitesh/Windows/Users/jites/Desktop/Dr. Vikram/ERK1/ERK1_result.pdbqt --- warnings | Ignored bad PDB record found on line 2 REMARK VINA RESULT: -12.2 0.000 0.000 Ignored bad PDB record found on line 3 REMARK 7 active torsions: Ignored bad PDB record found on line 4 REMARK status: ('A' for Active; 'I' for Inactive) Ignored bad PDB record found on line 5 REMARK 1 A between atoms: C19_19 and C20_2 Ignored bad PDB record found on line 7 REMARK 2 A between atoms: C21_4 and N5_3 265 messages similar to the above omitted Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/open_command/dialog.py"", line 150, in _qt_safe if data_format is None else "" format "" + StringArg.unparse(data_format.nicknames[0]))) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/commands/run.py"", line 31, in run results = command.run(text, log=log) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/open_command/cmd.py"", line 101, in cmd_open Command(session, registry=registry).run(provider_cmd_text, log=log) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/open_command/cmd.py"", line 152, in provider_open name or model_name_from_path(fi.file_name)), provider_kw) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/open_command/cmd.py"", line 382, in collated_open return func(*func_args, **func_kw) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/viewdockx/__init__.py"", line 56, in open return opener(session, data, file_name, True, True) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/viewdockx/pdbqt.py"", line 6, in open_pdbqt _extract_metadata(session, f, structures) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/viewdockx/pdbqt.py"", line 34, in _extract_metadata structures[model_index].viewdockx_data = vina_values IndexError: list index out of range IndexError: list index out of range File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/viewdockx/pdbqt.py"", line 34, in _extract_metadata structures[model_index].viewdockx_data = vina_values See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 390.138 OpenGL renderer: GeForce MX130/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: Acer Model: Aspire A515-51G OS: Ubuntu 20.04 focal Architecture: 64bit ELF CPU: 4 Intel(R) Core(TM) i5-7200U CPU @ 2.50GHz Cache Size: 3072 KB Memory: total used free shared buff/cache available Mem: 7.7Gi 2.3Gi 837Mi 97Mi 4.5Gi 5.0Gi Swap: 2.0Gi 0B 2.0Gi Graphics: 00:02.0 VGA compatible controller [0300]: Intel Corporation HD Graphics 620 [8086:5916] (rev 02) Subsystem: Acer Incorporated [ALI] HD Graphics 620 [1025:1193] Kernel driver in use: i915 PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8 }}} " defect closed normal Core fixed all ChimeraX