id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2864 Model Panel: 'Close' sometimes closes parent tony.schaefer@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.17763 ChimeraX Version: 0.92 (2020-02-17) Description Trying to close a child model using the model panel sometimes also closes the parent model. I've attached a session with several models, each with a child model (a bild object). I've also attached a structure with metal coordination pseudobonds. Closing either the child bild or the pseudobond group causes the parent structure to close about 50% of the time. I expand the model's branch on the tree, select the child model (so that the child model is the only one highlighted), and press ""close"". The `close` command seems to only close the specified model and not its parent. Log: > cd ""C:\Users\Tony Schaefer/Desktop"" Current working directory is: C:\Users\Tony Schaefer\Desktop UCSF ChimeraX version: 0.92 (2020-02-17) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX Successfully installed 'ChimAARON-0.1-py3-none-any.whl' Looking in indexes: https://pypi.org/simple, https://cxtoolshed.rbvi.ucsf.edu/pypi/ Processing c:\users\tony schaefer\appdata\local\ucsf\chimerax\cache\0.92\installers\chimaaron-0.1-py3-none- any.whl Requirement already satisfied, skipping upgrade: scipy in d:\chimerax\bin\lib\site-packages (from ChimAARON==0.1) (1.4.1) Requirement already satisfied, skipping upgrade: numpy in d:\chimerax\bin\lib\site-packages (from ChimAARON==0.1) (1.17.4+mkl) Requirement already satisfied, skipping upgrade: ChimeraX-Core>=0.1 in d:\chimerax\bin\lib\site-packages (from ChimAARON==0.1) (0.92) Installing collected packages: ChimAARON Attempting uninstall: ChimAARON Found existing installation: ChimAARON 0.1 Uninstalling ChimAARON-0.1: Successfully uninstalled ChimAARON-0.1 Successfully installed ChimAARON-0.1 Lock 2431659382344 acquired on C:\Users\Tony Schaefer\AppData\Local\UCSF\ChimeraX\Cache\0.92\toolshed\bundle_info.cache.lock Lock 2431659382344 released on C:\Users\Tony Schaefer\AppData\Local\UCSF\ChimeraX\Cache\0.92\toolshed\bundle_info.cache.lock WARNING: You are using pip version 20.0.1; however, version 20.0.2 is available. You should consider upgrading via the 'D:\ChimeraX\bin\ChimeraX.exe -m pip install --upgrade pip' command. > toolshed show ""Browse AaronTools Libraries"" > tile > preset chimaaron ball-stick-endcap Preset implemented in Python; no expansion to individual ChimeraX commands available. > close #1 > close #2.1 > close #3 > close #4.1 > close #5 > close #6.1 > close #7 > close > tile > preset chimaaron ball-stick-endcap Preset implemented in Python; no expansion to individual ChimeraX commands available. Empty filename passed to function > save session ""C:/Users/Tony Schaefer/Desktop/closing_children.cxs"" > open ""C:/Users/Tony Schaefer/Desktop/closing_children.cxs"" opened ChimeraX session > close #1.1 > close #2.1 > close #3.1 > close #4.1 > close #5 > close #6 > close #7 > close > open ""C:\Users\Tony Schaefer\Desktop\closing_children.cxs"" opened ChimeraX session > close #1 > close #2.1 > close #3.1 > close #4.1 > close #5 > close #6.1 > close #7 > close > open ""C:\Users\Tony Schaefer\Desktop\closing_children.cxs"" opened ChimeraX session > close #1-7 > open ""C:\Users\Tony Schaefer\Desktop\Ac-Sub04.ts2.2.log"" coordsets true Opened C:\Users\Tony Schaefer\Desktop\Ac-Sub04.ts2.2.log as a log trajectory > close > open ""C:\Users\Tony Schaefer\Desktop\test.pdb"" Summary of feedback from opening C:\Users\Tony Schaefer\Desktop\test.pdb --- warning | Ignored bad PDB record found on line 31183 END > close > open ""C:\Users\Tony Schaefer\Desktop\Ac-Sub18.ts2.Cf1.4.log"" Opened C:\Users\Tony Schaefer\Desktop\Ac-Sub18.ts2.Cf1.4.log as a log file > close #1 > open ""C:/Users/Tony Schaefer/Desktop/test 2.pdb"" Summary of feedback from opening C:/Users/Tony Schaefer/Desktop/test 2.pdb --- warnings | Ignored bad PDB record found on line 71 END Cannot find consistent set of bond orders for ring system containing atom C21 in residue UNK /a:1 > close > open ""C:\Users\Tony Schaefer\Desktop\test 2.pdb"" Summary of feedback from opening C:\Users\Tony Schaefer\Desktop\test 2.pdb --- warnings | Ignored bad PDB record found on line 71 END Cannot find consistent set of bond orders for ring system containing atom C22 in residue UNK /a:1 > close > open ""C:\Users\Tony Schaefer\Desktop\test 2.pdb"" Summary of feedback from opening C:\Users\Tony Schaefer\Desktop\test 2.pdb --- warnings | Ignored bad PDB record found on line 71 END Cannot find consistent set of bond orders for ring system containing atom C18 in residue UNK /a:1 > close #1.1 > close > open ""C:\Users\Tony Schaefer\Desktop\closing_children.cxs"" opened ChimeraX session > close #1.1 > close #2.1 > close #3.1 > close #4 > close #5 > close #6.1 > close #7 > close > open ""C:\Users\Tony Schaefer\Desktop\closing_children.cxs"" opened ChimeraX session > close #1.1 > close #2.1 > close #3.1 > close #4.1 > close #5.1 > close #6.1 > close #7.1 OpenGL version: 3.3.0 NVIDIA 441.87 OpenGL renderer: GeForce RTX 2070/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation File attachment: closing_children.zip }}} [attachment:""closing_children.zip""] " defect closed normal General Controls fixed all ChimeraX