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Opened 6 years ago
Closed 6 years ago
#2544 closed defect (duplicate)
Wrong version of Clipper installed
| Reported by: | Owned by: | Tristan Croll | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Third Party | Version: | |
| Keywords: | Cc: | Conrad Huang | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Linux-3.10.0-693.2.2.el7.x86_64-x86_64-with-centos-7.6.1810-Core ChimeraX Version: 0.9 (2019-06-06) Description Any scrolling with an active map. Note that I'm an absolute novice with ChimeraX and may have done something wrong! Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 0.9 (2019-06-06) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX Downloading bundle ChimeraX_ISOLDE-1.0b3-cp37-cp37m-linux_x86_64.whl Downloading bundle ChimeraX_ISOLDE-1.0b3-cp37-cp37m-linux_x86_64.whl Looking in indexes: https://pypi.org/simple, https://cxtoolshed.rbvi.ucsf.edu/pypi/ Processing /home/UNIMELB/cmorton2/Downloads/ChimeraX_ISOLDE-1.0b3-cp37-cp37m-linux_x86_64.whl Requirement already satisfied, skipping upgrade: ChimeraX-Atomic>=0.7 in /opt/UCSF/ChimeraX/lib/python3.7/site-packages (from ChimeraX-ISOLDE==1.0b3) (1.0) Collecting ChimeraX-Clipper>=0.9.4 (from ChimeraX-ISOLDE==1.0b3) Downloading https://cxtoolshed.rbvi.ucsf.edu/media/chimeraxclipper/releases/0.9.10/ChimeraX_Clipper-0.9.10-cp37-cp37m-linux_x86_64.whl (26.7MB) Requirement already satisfied, skipping upgrade: ChimeraX-Core==0.9 in /opt/UCSF/ChimeraX/lib/python3.7/site-packages (from ChimeraX-ISOLDE==1.0b3) (0.9) Installing collected packages: ChimeraX-Clipper, ChimeraX-ISOLDE chimerax-clipper 0.9.10 has requirement ChimeraX-Core==0.91, but you'll have chimerax-core 0.9 which is incompatible. Could not install packages due to an EnvironmentError: [Errno 13] Permission denied: '/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/clipper' Consider using the `--user` option or check the permissions. You are using pip version 19.0.3, however version 19.3.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. QXcbConnection: XCB error: 3 (BadWindow), sequence: 4553, resource id: 31966523, major code: 40 (TranslateCoords), minor code: 0 Bundle installation canceled QXcbConnection: XCB error: 3 (BadWindow), sequence: 6311, resource id: 31969141, major code: 40 (TranslateCoords), minor code: 0 Downloading bundle ChimeraX_ISOLDE-1.0b3-cp37-cp37m-linux_x86_64.whl Successfully installed ChimeraX-Clipper-0.9.10 ChimeraX-ISOLDE-1.0b3 Installed ChimeraX-Clipper (0.9.10) Installed ChimeraX-ISOLDE (1.0b3) 'clip' is a prefix of an existing command 'clipper' QXcbConnection: XCB error: 3 (BadWindow), sequence: 7085, resource id: 31980409, major code: 40 (TranslateCoords), minor code: 0 > toolshed show ISOLDE > set selectionWidth 4 Done loading forcefield > open /home/UNIMELB/cmorton2/work/bio21/malaria/proteasome/cryoem/20SBTZ/CurrentBest/Pf20S_4BO2_HV_SS_21_real_space_refined.pdb Chain information for Pf20S_4BO2_HV_SS_21_real_space_refined.pdb #1 --- Chain | Description A O | No description available B P | No description available C Q | No description available D R | No description available E S | No description available F T | No description available G U | No description available H V | No description available I W | No description available J X | No description available K Y | No description available L Z | No description available M a | No description available N b | No description available Chain information for Pf20S_4BO2_HV_SS_21_real_space_refined.pdb --- Chain | Description 1.3/A 1.3/O | No description available 1.3/B 1.3/P | No description available 1.3/C 1.3/Q | No description available 1.3/D 1.3/R | No description available 1.3/E 1.3/S | No description available 1.3/F 1.3/T | No description available 1.3/G 1.3/U | No description available 1.3/H 1.3/V | No description available 1.3/I 1.3/W | No description available 1.3/J 1.3/X | No description available 1.3/K 1.3/Y | No description available 1.3/L 1.3/Z | No description available 1.3/M 1.3/a | No description available 1.3/N 1.3/b | No description available QXcbConnection: XCB error: 3 (BadWindow), sequence: 14999, resource id: 32174328, major code: 40 (TranslateCoords), minor code: 0 > open /home/UNIMELB/cmorton2/work/bio21/malaria/proteasome/cryoem/20SBTZ/maps/Corrected_sharpened_map.ccp4 Unrecognized file suffix '.ccp4' Unrecognized file suffix '.ccp4' QXcbConnection: XCB error: 3 (BadWindow), sequence: 16140, resource id: 32176694, major code: 40 (TranslateCoords), minor code: 0 > open /home/UNIMELB/cmorton2/work/bio21/malaria/proteasome/cryoem/20SBTZ/maps/sharpened_map_coeffs.mtz Must specify a structure model to associate with crystallographic data Must specify a structure model to associate with crystallographic data QXcbConnection: XCB error: 3 (BadWindow), sequence: 26229, resource id: 32184405, major code: 40 (TranslateCoords), minor code: 0 Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. > volume selMaps hide > volume selMaps hide > volume selMaps show Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 457, in _wheel_event f.wheel(MouseEvent(event)) File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File "/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 418.43 OpenGL renderer: GeForce GTX 1080/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation
Change History (2)
comment:1 by , 6 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Third Party |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
comment:2 by , 6 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
| Summary: | ChimeraX bug report submission → Wrong version of Clipper installed |
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This is caused by a bug in the 0.9 release version of ChimeraX causing it to auto-install the wrong version of the required Clipper plugin when installing ISOLDE. I'd strongly recommend instead installing the most recent daily build of ChimeraX, which will let you install the latest version of ISOLDE (currently at version 1.0b3.dev6).