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#2543 closed defect (duplicate)

Clipper: No module named 'chimerax.core.graphics.clipping'

Reported by:	joel.mackay@…	Owned by:	Tristan Croll
Priority:	normal	Milestone:
Component:	Third Party	Version:
Keywords:		Cc:	Conrad Huang
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.17134
ChimeraX Version: 0.9 (2019-06-06)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 0.9 (2019-06-06)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> toolshed show ISOLDE

> set selectionWidth 4

Done loading forcefield  

> open 1a0m structureFactors true

Summary of feedback from opening 1a0m fetched from pdb  
---  
warning | No free flags detected in this dataset! Automatically generated a
new random set with 452 free from 9265 observed reflections. You should save
your data to a new MTZ file and use this for any future rebuilding/refinement.  
notes | Fetching compressed mmCIF 1a0m from
http://files.rcsb.org/download/1a0m.cif  
Fetching compressed 1a0m structure factors from
http://files.rcsb.org/download/1a0m-sf.cif  
Resolution: 1.0944213038232702  
  
1a0m title:  
1.1 angstrom crystal structure of A-conotoxin [TYR15]-epi [more info...]  
  
Chain information for 1a0m  
---  
Chain | Description  
1.3/A 1.3/B | α-conotoxin [TYR15]-epi  
  
Non-standard residues in 1a0m #1.3  
---  
NH2 — amino group  
  
  

> save "C:\\\Users\\\joel/Desktop/1a0m.mtz" #1

Writing data to: '/*/*/[FOBS, SIGFOBS]'  

> set bgColor white

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\joel\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\joel\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\joel\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\joel\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\joel\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\joel\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\joel\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\joel\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\joel\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\joel\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\joel\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\joel\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\joel\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\joel\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\joel\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 416.34
OpenGL renderer: GeForce GTX 1080/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Change History (2)

comment:1 by Eric Pettersen, 6 years ago

Cc:	Conrad Huang added
Component:	Unassigned → Third Party
Owner:	set to Tristan Croll
Platform:	→ all
Project:	→ ChimeraX
Status:	new → assigned
Summary:	ChimeraX bug report submission → Clipper: No module named 'chimerax.core.graphics.clipping'

comment:2 by Tristan Croll, 6 years ago

Resolution:	→ duplicate
Status:	assigned → closed

Discussed with Joel off-list.

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