Context Navigation

← Previous Ticket
Next Ticket →

#2494 closed defect (fixed)

More 2D labels issues

Reported by:	ubaumann@…	Owned by:	Tom Goddard
Priority:	moderate	Milestone:
Component:	Graphics	Version:
Keywords:		Cc:
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description

The following bug report has been submitted:
Platform: Darwin-18.7.0-x86_64-i386-64bit
ChimeraX Version: 0.91 (2019-10-10)
Description
right click to shift labels

Log:
UCSF ChimeraX version: 0.91 (2019-10-10)
© 2016-2019 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX

open /Users/ubaumann/Documents/Papers/RTX-review/Piccies/1KAP-
colored_crimson3.cxs

opened ChimeraX session

select clear

show :ZN

select :185,189,195,223,225

50 atoms, 49 bonds, 1 model selected

show (sel-residues & sidechain) target ab

style sel ball

Changed 50 atom styles

color sel byhetero

select clear

save session /Users/ubaumann/Documents/Papers/RTX-review/Piccies/1KAP-
colored_crimson4.cxs

save image /Users/ubaumann/Documents/Papers/RTX-review/Piccies/1KAP-
colored_crimson4a.tif width 6400 height 3987 supersample 3

turn

save image /Users/ubaumann/Documents/Papers/RTX-review/Piccies/1KAP-
colored_crimson4b.tif width 2432 height 1515 supersample 3

2dlabels text N

ui mousemode rightMode "move label"

2dlabels #3.1 xpos 0.429 ypos 0.147

close #3.1

2dlabels text N size 64

2dlabels text N size 48

close #3.1

Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 464, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 392, in
_dispatch_mouse_event
f(MouseEvent(event, modifiers=modifiers))
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/label/movelabel.py", line 48, in mouse_drag
label2d(ses, [lbl], xpos = xpos, ypos = ypos)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/label/label2d.py", line 32, in label2d
return [_update_label(session, l, kw) for l in labels]
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/label/label2d.py", line 32, in <listcomp>
return [_update_label(session, l, kw) for l in labels]
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/label/label2d.py", line 125, in _update_label
l.update_drawing()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/label/label2d.py", line 499, in update_drawing
d.display = self.visibility
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/graphics/drawing.py", line 243, in setattr
super(Drawing, self).setattr(key, value)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/models.py", line 272, in _set_display
Drawing.set_display(self, display)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/graphics/drawing.py", line 337, in set_display
dp = self.display_positions
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/graphics/drawing.py", line 350, in
get_display_positions
dp = ones((len(self._positions),), bool)
TypeError: object of type 'NoneType' has no len()

TypeError: object of type 'NoneType' has no len()

File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/graphics/drawing.py", line 350, in
get_display_positions
dp = ones((len(self._positions),), bool)

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

Expected 'all' or a 2d label name or a label models specifier or a keyword

2dlabels #3.2 xpos 0.425 ypos 0.133

2dlabels text C size 48

2dlabels #3.1 xpos 0.470 ypos 0.121

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

Expected 'all' or a 2d label name or a label models specifier or a keyword

2dlabels #3.2 xpos 0.428 ypos 0.145

2dlabels text Protease size 48

2dlabels #3.3 xpos 0.377 ypos 0.826

2dlabels text Intermediate/N-Cap size 48

2dlabels #3.4 xpos 0.619 ypos 0.455

2dlabels text "RTX repeats" size 48

2dlabels #3.5 xpos 0.631 ypos 0.303

2dlabels text C-cap size 48

2dlabels #3.6 xpos 0.631 ypos 0.164

save image /Users/ubaumann/Documents/Papers/RTX-review/Piccies/1KAP-
colored_crimson4b.tif width 6400 height 3987 supersample 4

turn

2dlabels text C-cap size 48

close #3.7

turn

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

TypeError: object of type 'NoneType' has no len()

See log for complete Python traceback.

Expected 'all' or a 2d label name or a label models specifier or a keyword

2dlabels #3.2 xpos 0.402 ypos 0.163

2dlabels #3.1 xpos 0.430 ypos 0.148

2dlabels #3.2 xpos 0.395 ypos 0.147

2dlabels #3.1 xpos 0.423 ypos 0.128

2dlabels #3.6 xpos 0.591 ypos 0.152

2dlabels #3.5 xpos 0.576 ypos 0.311

2dlabels #3.4 xpos 0.611 ypos 0.462

2dlabels #3.3 xpos 0.620 ypos 0.755

2dlabels #3.4 xpos 0.609 ypos 0.449

save image /Users/ubaumann/Documents/Papers/RTX-review/Piccies/1KAP-
colored_crimson4a.tif width 2432 height 1515 supersample 4

OpenGL version: 4.1 ATI-2.11.20
OpenGL renderer: AMD Radeon Pro 560 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

Change History (1)

comment:1 by Tom Goddard, 6 years ago

Resolution:	→ fixed
Status:	assigned → closed

Fixed.

Same bug as in #2493, trying to move a 2d label after closing a label. The ghost of the closed label caused the error.

Note: See TracTickets for help on using tickets.

Download in other formats: