![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 6 years ago
Last modified 6 years ago
#2372 feedback defect
Crash during script execution
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-17.7.0-x86_64-i386-64bit
ChimeraX Version: 0.91 (2019-08-30)
Description
Last time you used ChimeraX it crashed.
I executed a script (please find it in attachment). It crashed during execution.
Process: ChimeraX [9565]
Path: /Users/USER/*/ChimeraX_Daily-030919.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 0.91.0 (0.91.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [9565]
User ID: 1047
Date/Time: 2019-09-03 15:46:56.450 +0200
OS Version: Mac OS X 10.13.6 (17G8030)
Report Version: 12
Anonymous UUID: 6B85E5B3-F91F-35AD-E3C0-B9736BF666FC
Time Awake Since Boot: 48000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x00000000
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff55462b66 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff5562d080 pthread_kill + 333
2 libsystem_c.dylib 0x00007fff553706fe raise + 26
3 libsystem_platform.dylib 0x00007fff55620f5a _sigtramp + 26
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff553be1ae abort + 127
6 libGPUSupportMercury.dylib 0x00007fff45e2e0f1 gpusGenerateCrashLog + 168
7 com.apple.AMDRadeonX3000GLDriver 0x000000011c8b977f gpusKillClientExt + 9
8 libGPUSupportMercury.dylib 0x00007fff45e2f63a gpusSubmitDataBuffers + 540
9 com.apple.AMDRadeonX3000GLDriver 0x000000011c8de2f2 glrATI_Hwl_SubmitPacketsWithToken + 362
10 com.apple.AMDRadeonX3000GLDriver 0x000000011c891a7c glrReadFramebufferData + 2357
11 GLEngine 0x00007fff378b64f9 glReadPixels_Exec + 1032
12 libGL.dylib 0x00007fff36d00dc3 glReadPixels + 42
13 _ctypes.cpython-37m-darwin.so 0x000000010fbebe9f ffi_call_unix64 + 79
14 _ctypes.cpython-37m-darwin.so 0x000000010fbec6fa ffi_call + 858
15 _ctypes.cpython-37m-darwin.so 0x000000010fbe77f3 _ctypes_callproc + 787
16 _ctypes.cpython-37m-darwin.so 0x000000010fbe1553 PyCFuncPtr_call + 1043
17 org.python.python 0x000000010460a4f8 PyObject_Call + 136
18 org.python.python 0x000000010465a73e slot_tp_call + 190
19 org.python.python 0x000000010460a1ff _PyObject_FastCallKeywords + 559
20 org.python.python 0x00000001046d402a call_function + 714
21 org.python.python 0x00000001046cc67a _PyEval_EvalFrameDefault + 5562
22 org.python.python 0x00000001046d4c84 _PyEval_EvalCodeWithName + 2788
23 org.python.python 0x000000010460a396 _PyFunction_FastCallKeywords + 230
24 org.python.python 0x00000001046d4031 call_function + 721
25 org.python.python 0x00000001046cc67a _PyEval_EvalFrameDefault + 5562
26 org.python.python 0x00000001046d4c84 _PyEval_EvalCodeWithName + 2788
27 org.python.python 0x000000010460a396 _PyFunction_FastCallKeywords + 230
28 org.python.python 0x00000001046d4031 call_function + 721
29 org.python.python 0x00000001046cc660 _PyEval_EvalFrameDefault + 5536
30 org.python.python 0x00000001046d4c84 _PyEval_EvalCodeWithName + 2788
31 org.python.python 0x000000010460a396 _PyFunction_FastCallKeywords + 230
32 org.python.python 0x00000001046d4031 call_function + 721
33 org.python.python 0x00000001046cc7a9 _PyEval_EvalFrameDefault + 5865
34 org.python.python 0x00000001046d4c84 _PyEval_EvalCodeWithName + 2788
35 org.python.python 0x000000010460a396 _PyFunction_FastCallKeywords + 230
36 org.python.python 0x00000001046d4031 call_function + 721
37 org.python.python 0x00000001046cc67a _PyEval_EvalFrameDefault + 5562
38 org.python.python 0x000000010460a893 function_code_fastcall + 195
39 org.python.python 0x00000001046d4031 call_function + 721
40 org.python.python 0x00000001046cc660 _PyEval_EvalFrameDefault + 5536
41 org.python.python 0x000000010460a893 function_code_fastcall + 195
42 org.python.python 0x00000001046d4031 call_function + 721
43 org.python.python 0x00000001046cc660 _PyEval_EvalFrameDefault + 5536
44 org.python.python 0x00000001046d4c84 _PyEval_EvalCodeWithName + 2788
45 org.python.python 0x000000010460a396 _PyFunction_FastCallKeywords + 230
46 org.python.python 0x00000001046d4031 call_function + 721
47 org.python.python 0x00000001046cc660 _PyEval_EvalFrameDefault + 5536
48 org.python.python 0x000000010460a893 function_code_fastcall + 195
49 org.python.python 0x00000001046d4031 call_function + 721
50 org.python.python 0x00000001046cc660 _PyEval_EvalFrameDefault + 5536
51 org.python.python 0x00000001046d4c84 _PyEval_EvalCodeWithName + 2788
52 org.python.python 0x000000010460a396 _PyFunction_FastCallKeywords + 230
53 org.python.python 0x00000001046d4031 call_function + 721
54 org.python.python 0x00000001046cc70b _PyEval_EvalFrameDefault + 5707
55 org.python.python 0x00000001046d4c84 _PyEval_EvalCodeWithName + 2788
56 org.python.python 0x0000000104609e72 _PyFunction_FastCallDict + 450
57 org.python.python 0x00000001046cc9e5 _PyEval_EvalFrameDefault + 6437
58 org.python.python 0x00000001046d4c84 _PyEval_EvalCodeWithName + 2788
59 org.python.python 0x000000010460a396 _PyFunction_FastCallKeywords + 230
60 org.python.python 0x00000001046d4031 call_function + 721
61 org.python.python 0x00000001046cc7a9 _PyEval_EvalFrameDefault + 5865
62 org.python.python 0x00000001046d4c84 _PyEval_EvalCodeWithName + 2788
63 org.python.python 0x000000010460a396 _PyFunction_FastCallKeywords + 230
64 org.python.python 0x00000001046d4031 call_function + 721
65 org.python.python 0x00000001046cc70b _PyEval_EvalFrameDefault + 5707
66 org.python.python 0x00000001046d4c84 _PyEval_EvalCodeWithName + 2788
67 org.python.python 0x0000000104609e72 _PyFunction_FastCallDict + 450
68 org.python.python 0x00000001046cc9e5 _PyEval_EvalFrameDefault + 6437
69 org.python.python 0x00000001046d4c84 _PyEval_EvalCodeWithName + 2788
70 org.python.python 0x0000000104609e72 _PyFunction_FastCallDict + 450
71 org.python.python 0x00000001046cc9e5 _PyEval_EvalFrameDefault + 6437
72 org.python.python 0x00000001046d4c84 _PyEval_EvalCodeWithName + 2788
73 org.python.python 0x0000000104609e72 _PyFunction_FastCallDict + 450
74 org.python.python 0x00000001046cc9e5 _PyEval_EvalFrameDefault + 6437
75 org.python.python 0x00000001046d4c84 _PyEval_EvalCodeWithName + 2788
76 org.python.python 0x0000000104609e72 _PyFunction_FastCallDict + 450
77 org.python.python 0x000000010460b3b6 _PyObject_Call_Prepend + 150
78 org.python.python 0x000000010460a4f8 PyObject_Call + 136
79 org.python.python 0x00000001046cc9e5 _PyEval_EvalFrameDefault + 6437
80 org.python.python 0x00000001046d4c84 _PyEval_EvalCodeWithName + 2788
81 org.python.python 0x0000000104609e72 _PyFunction_FastCallDict + 450
82 org.python.python 0x00000001046cc9e5 _PyEval_EvalFrameDefault + 6437
83 org.python.python 0x00000001046d4c84 _PyEval_EvalCodeWithName + 2788
84 org.python.python 0x000000010460a396 _PyFunction_FastCallKeywords + 230
85 org.python.python 0x00000001046d4031 call_function + 721
86 org.python.python 0x00000001046cc660 _PyEval_EvalFrameDefault + 5536
87 org.python.python 0x00000001046d4c84 _PyEval_EvalCodeWithName + 2788
88 org.python.python 0x0000000104609e72 _PyFunction_FastCallDict + 450
89 org.python.python 0x000000010460b3b6 _PyObject_Call_Prepend + 150
90 org.python.python 0x000000010460a4f8 PyObject_Call + 136
91 QtCore.so 0x0000000112776f77 PyQtSlot::call(_object*, _object*) const + 39
92 QtCore.so 0x0000000112776e86 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
93 QtCore.so 0x0000000112777985 PyQtSlotProxy::unislot(void**) + 85
94 QtCore.so 0x00000001127778fa PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
95 QtCore 0x0000000112264b4d QMetaObject::activate(QObject*, int, int, void**) + 1773
96 QtCore 0x000000011226509c QMetaObject::activate(QObject*, int, int, void**) + 3132
97 QtWidgets 0x00000001116bd7d7 QWidgetLineControl::processKeyEvent(QKeyEvent*) + 551
98 QtWidgets 0x00000001116b4492 QLineEdit::keyPressEvent(QKeyEvent*) + 34
99 QtWidgets 0x00000001115af4af QWidget::event(QEvent*) + 527
100 QtWidgets 0x00000001116b37f7 QLineEdit::event(QEvent*) + 727
101 QtWidgets 0x00000001116782b0 QComboBox::keyPressEvent(QKeyEvent*) + 784
102 QtWidgets.so 0x000000011122423b meth_QComboBox_keyPressEvent(_object*, _object*) + 139
103 org.python.python 0x000000010460aedb _PyMethodDef_RawFastCallKeywords + 251
104 org.python.python 0x000000010460a3dc _PyCFunction_FastCallKeywords + 44
105 org.python.python 0x00000001046d3fc9 call_function + 617
106 org.python.python 0x00000001046cc67a _PyEval_EvalFrameDefault + 5562
107 org.python.python 0x00000001046d4c84 _PyEval_EvalCodeWithName + 2788
108 org.python.python 0x0000000104609e72 _PyFunction_FastCallDict + 450
109 org.python.python 0x000000010460b3b6 _PyObject_Call_Prepend + 150
110 org.python.python 0x000000010460a4f8 PyObject_Call + 136
111 sip.so 0x000000011263cf6e call_method + 76
112 sip.so 0x0000000112638d6b sip_api_call_procedure_method + 152
113 QtWidgets.so 0x00000001111279a7 sipQComboBox::keyPressEvent(QKeyEvent*) + 103
114 QtWidgets 0x00000001115af4af QWidget::event(QEvent*) + 527
115 QtWidgets 0x0000000111677c14 QComboBox::event(QEvent*) + 372
116 QtWidgets.so 0x0000000111126eb0 sipQComboBox::event(QEvent*) + 192
117 QtWidgets 0x00000001115736fd QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
118 QtWidgets 0x0000000111574c4c QApplication::notify(QObject*, QEvent*) + 924
119 QtWidgets.so 0x00000001111423ca sipQApplication::notify(QObject*, QEvent*) + 234
120 QtCore 0x0000000112233e44 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
121 QtWidgets 0x00000001115ce1f1 0x111563000 + 438769
122 QtWidgets 0x00000001115cd5d1 0x111563000 + 435665
123 QtWidgets 0x00000001115736fd QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
124 QtWidgets 0x0000000111574b02 QApplication::notify(QObject*, QEvent*) + 594
125 QtWidgets.so 0x00000001111423ca sipQApplication::notify(QObject*, QEvent*) + 234
126 QtCore 0x0000000112233e44 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
127 QtGui 0x0000000111b38b88 QGuiApplicationPrivate::processKeyEvent(QWindowSystemInterfacePrivate::KeyEvent*) + 152
128 QtGui 0x0000000111b1f6ab QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 219
129 QtGui 0x0000000111b1a2d5 QWindowSystemInterface::flushWindowSystemEvents(QFlags) + 581
130 libqcocoa.dylib 0x000000011bdf6e88 0x11bdca000 + 183944
131 libqcocoa.dylib 0x000000011bdf7058 0x11bdca000 + 184408
132 com.apple.AppKit 0x00007fff2b20d43d -[NSWindow(NSEventRouting) _reallySendEvent:isDelayedEvent:] + 5040
133 com.apple.AppKit 0x00007fff2b20bc70 -[NSWindow(NSEventRouting) sendEvent:] + 497
134 libqcocoa.dylib 0x000000011bdfa465 0x11bdca000 + 197733
135 com.apple.AppKit 0x00007fff2b06d236 -[NSApplication(NSEvent) sendEvent:] + 2462
136 libqcocoa.dylib 0x000000011be013ea 0x11bdca000 + 226282
137 com.apple.AppKit 0x00007fff2a8cd8b5 -[NSApplication run] + 812
138 libqcocoa.dylib 0x000000011bdfdccb 0x11bdca000 + 212171
139 QtCore 0x000000011222f50f QEventLoop::exec(QFlags) + 431
140 QtCore 0x0000000112234452 QCoreApplication::exec() + 130
141 QtWidgets.so 0x00000001112317d2 meth_QApplication_exec_(_object*, _object*) + 82
142 org.python.python 0x000000010460aedb _PyMethodDef_RawFastCallKeywords + 251
143 org.python.python 0x000000010460a3dc _PyCFunction_FastCallKeywords + 44
144 org.python.python 0x00000001046d3fc9 call_function + 617
145 org.python.python 0x00000001046cc67a _PyEval_EvalFrameDefault + 5562
146 org.python.python 0x000000010460a893 function_code_fastcall + 195
147 org.python.python 0x00000001046d4031 call_function + 721
148 org.python.python 0x00000001046cc67a _PyEval_EvalFrameDefault + 5562
149 org.python.python 0x00000001046d4c84 _PyEval_EvalCodeWithName + 2788
150 org.python.python 0x000000010460a396 _PyFunction_FastCallKeywords + 230
151 org.python.python 0x00000001046d4031 call_function + 721
152 org.python.python 0x00000001046cc70b _PyEval_EvalFrameDefault + 5707
153 org.python.python 0x00000001046d4c84 _PyEval_EvalCodeWithName + 2788
154 org.python.python 0x00000001046cb020 PyEval_EvalCode + 48
155 org.python.python 0x00000001046c8683 builtin_exec + 563
156 org.python.python 0x000000010460b08e _PyMethodDef_RawFastCallKeywords + 686
157 org.python.python 0x000000010460a3dc _PyCFunction_FastCallKeywords + 44
158 org.python.python 0x00000001046d3fc9 call_function + 617
159 org.python.python 0x00000001046cc70b _PyEval_EvalFrameDefault + 5707
160 org.python.python 0x00000001046d4c84 _PyEval_EvalCodeWithName + 2788
161 org.python.python 0x000000010460a396 _PyFunction_FastCallKeywords + 230
162 org.python.python 0x00000001046d4031 call_function + 721
163 org.python.python 0x00000001046cc70b _PyEval_EvalFrameDefault + 5707
164 org.python.python 0x00000001046d4c84 _PyEval_EvalCodeWithName + 2788
165 org.python.python 0x0000000104609e72 _PyFunction_FastCallDict + 450
166 org.python.python 0x00000001047290e3 pymain_run_module + 147
167 org.python.python 0x00000001047281a1 pymain_main + 5041
168 org.python.python 0x0000000104726de3 Py_Main + 51
169 edu.ucsf.cgl.ChimeraX 0x00000001045e2e01 main + 593
170 libdyld.dylib 0x00007fff55312015 start + 1
Thread 1:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff5545920a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff55458724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2d349c45 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff2d348f97 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff2d348607 CFRunLoopRunSpecific + 487
5 com.apple.AppKit 0x00007fff2aa15fc4 _NSEventThread + 184
6 libsystem_pthread.dylib 0x00007fff5562a661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff5562a50d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff55629bf9 thread_start + 13
Thread 2:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5545920a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff55458724 mach_msg + 60
2 QtWebEngineCore 0x00000001150be96d 0x112f17000 + 35289453
3 QtWebEngineCore 0x00000001150be86f 0x112f17000 + 35289199
4 QtWebEngineCore 0x000000011507269d 0x112f17000 + 34977437
5 QtWebEngineCore 0x000000011509b6c5 0x112f17000 + 35145413
6 QtWebEngineCore 0x00000001150edffc 0x112f17000 + 35483644
7 QtWebEngineCore 0x000000011512dd47 0x112f17000 + 35745095
8 libsystem_pthread.dylib 0x00007fff5562a661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5562a50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff55629bf9 thread_start + 13
Thread 3:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff55463bea kevent + 10
1 QtWebEngineCore 0x000000011537ffd9 0x112f17000 + 38178777
2 QtWebEngineCore 0x000000011537d2ed 0x112f17000 + 38167277
3 QtWebEngineCore 0x000000011513430c 0x112f17000 + 35771148
4 QtWebEngineCore 0x000000011509b6c5 0x112f17000 + 35145413
5 QtWebEngineCore 0x00000001150edffc 0x112f17000 + 35483644
6 QtWebEngineCore 0x000000011512dd47 0x112f17000 + 35745095
7 libsystem_pthread.dylib 0x00007fff5562a661 _pthread_body + 340
8 libsystem_pthread.dylib 0x00007fff5562a50d _pthread_start + 377
9 libsystem_pthread.dylib 0x00007fff55629bf9 thread_start + 13
Thread 4:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff55463bea kevent + 10
1 QtWebEngineCore 0x000000011537ffd9 0x112f17000 + 38178777
2 QtWebEngineCore 0x000000011537d2ed 0x112f17000 + 38167277
3 QtWebEngineCore 0x00000001151342f4 0x112f17000 + 35771124
4 QtWebEngineCore 0x000000011509b6c5 0x112f17000 + 35145413
5 QtWebEngineCore 0x00000001150dd0b4 0x112f17000 + 35414196
6 QtWebEngineCore 0x00000001150edffc 0x112f17000 + 35483644
7 QtWebEngineCore 0x000000011512dd47 0x112f17000 + 35745095
8 libsystem_pthread.dylib 0x00007fff5562a661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5562a50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff55629bf9 thread_start + 13
Thread 5:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff5545920a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff55458724 mach_msg + 60
2 QtWebEngineCore 0x00000001150be96d 0x112f17000 + 35289453
3 QtWebEngineCore 0x00000001150bea61 0x112f17000 + 35289697
4 QtWebEngineCore 0x00000001150d6368 0x112f17000 + 35386216
5 QtWebEngineCore 0x00000001150d6c9b 0x112f17000 + 35388571
6 QtWebEngineCore 0x00000001150d6904 0x112f17000 + 35387652
7 QtWebEngineCore 0x000000011512dd47 0x112f17000 + 35745095
8 libsystem_pthread.dylib 0x00007fff5562a661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5562a50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff55629bf9 thread_start + 13
Thread 6:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff5545920a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff55458724 mach_msg + 60
2 QtWebEngineCore 0x00000001150be96d 0x112f17000 + 35289453
3 QtWebEngineCore 0x00000001150bea61 0x112f17000 + 35289697
4 QtWebEngineCore 0x00000001150d6368 0x112f17000 + 35386216
5 QtWebEngineCore 0x00000001150d6c9b 0x112f17000 + 35388571
6 QtWebEngineCore 0x00000001150d6874 0x112f17000 + 35387508
7 QtWebEngineCore 0x000000011512dd47 0x112f17000 + 35745095
8 libsystem_pthread.dylib 0x00007fff5562a661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5562a50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff55629bf9 thread_start + 13
Thread 7:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff55463bea kevent + 10
1 QtWebEngineCore 0x000000011537ffd9 0x112f17000 + 38178777
2 QtWebEngineCore 0x000000011537d2ed 0x112f17000 + 38167277
3 QtWebEngineCore 0x00000001151342f4 0x112f17000 + 35771124
4 QtWebEngineCore 0x000000011509b6c5 0x112f17000 + 35145413
5 QtWebEngineCore 0x0000000114a01a74 0x112f17000 + 28224116
6 QtWebEngineCore 0x00000001150edffc 0x112f17000 + 35483644
7 QtWebEngineCore 0x000000011512dd47 0x112f17000 + 35745095
8 libsystem_pthread.dylib 0x00007fff5562a661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5562a50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff55629bf9 thread_start + 13
Thread 8:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff5545920a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff55458724 mach_msg + 60
2 QtWebEngineCore 0x00000001150be96d 0x112f17000 + 35289453
3 QtWebEngineCore 0x00000001150be86f 0x112f17000 + 35289199
4 QtWebEngineCore 0x00000001150d635a 0x112f17000 + 35386202
5 QtWebEngineCore 0x00000001150d69ff 0x112f17000 + 35387903
6 QtWebEngineCore 0x00000001150d68a4 0x112f17000 + 35387556
7 QtWebEngineCore 0x000000011512dd47 0x112f17000 + 35745095
8 libsystem_pthread.dylib 0x00007fff5562a661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5562a50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff55629bf9 thread_start + 13
Thread 9:: CompositorTileWorker1/72707
0 libsystem_kernel.dylib 0x00007fff55462a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5562b589 _pthread_cond_wait + 732
2 QtWebEngineCore 0x000000011512c5d8 0x112f17000 + 35739096
3 QtWebEngineCore 0x00000001160b4a68 0x112f17000 + 52025960
4 QtWebEngineCore 0x00000001150eccd4 0x112f17000 + 35478740
5 QtWebEngineCore 0x000000011512dd47 0x112f17000 + 35745095
6 libsystem_pthread.dylib 0x00007fff5562a661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff5562a50d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff55629bf9 thread_start + 13
Thread 10:: AudioThread
0 libsystem_kernel.dylib 0x00007fff5545920a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff55458724 mach_msg + 60
2 QtWebEngineCore 0x00000001150be96d 0x112f17000 + 35289453
3 QtWebEngineCore 0x00000001150be86f 0x112f17000 + 35289199
4 QtWebEngineCore 0x000000011507269d 0x112f17000 + 34977437
5 QtWebEngineCore 0x000000011509b6c5 0x112f17000 + 35145413
6 QtWebEngineCore 0x00000001150edffc 0x112f17000 + 35483644
7 QtWebEngineCore 0x000000011512dd47 0x112f17000 + 35745095
8 libsystem_pthread.dylib 0x00007fff5562a661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5562a50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff55629bf9 thread_start + 13
Thread 11:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5545920a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff55458724 mach_msg + 60
2 QtWebEngineCore 0x00000001150be96d 0x112f17000 + 35289453
3 QtWebEngineCore 0x00000001150be86f 0x112f17000 + 35289199
4 QtWebEngineCore 0x000000011507269d 0x112f17000 + 34977437
5 QtWebEngineCore 0x000000011509b6c5 0x112f17000 + 35145413
6 QtWebEngineCore 0x00000001150edffc 0x112f17000 + 35483644
7 QtWebEngineCore 0x000000011512dd47 0x112f17000 + 35745095
8 libsystem_pthread.dylib 0x00007fff5562a661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5562a50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff55629bf9 thread_start + 13
Thread 12:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff5545920a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff55458724 mach_msg + 60
2 QtWebEngineCore 0x00000001150be96d 0x112f17000 + 35289453
3 QtWebEngineCore 0x0000000115072692 0x112f17000 + 34977426
4 QtWebEngineCore 0x000000011509b6c5 0x112f17000 + 35145413
5 QtWebEngineCore 0x00000001150edffc 0x112f17000 + 35483644
6 QtWebEngineCore 0x000000011512dd47 0x112f17000 + 35745095
7 libsystem_pthread.dylib 0x00007fff5562a661 _pthread_body + 340
8 libsystem_pthread.dylib 0x00007fff5562a50d _pthread_start + 377
9 libsystem_pthread.dylib 0x00007fff55629bf9 thread_start + 13
Thread 13:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff55463bea kevent + 10
1 QtWebEngineCore 0x000000011537ffd9 0x112f17000 + 38178777
2 QtWebEngineCore 0x000000011537d2ed 0x112f17000 + 38167277
3 QtWebEngineCore 0x000000011513430c 0x112f17000 + 35771148
4 QtWebEngineCore 0x000000011509b6c5 0x112f17000 + 35145413
5 QtWebEngineCore 0x00000001150edffc 0x112f17000 + 35483644
6 QtWebEngineCore 0x000000011512dd47 0x112f17000 + 35745095
7 libsystem_pthread.dylib 0x00007fff5562a661 _pthread_body + 340
8 libsystem_pthread.dylib 0x00007fff5562a50d _pthread_start + 377
9 libsystem_pthread.dylib 0x00007fff55629bf9 thread_start + 13
Thread 14:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff5545920a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff55458724 mach_msg + 60
2 QtWebEngineCore 0x00000001150be96d 0x112f17000 + 35289453
3 QtWebEngineCore 0x00000001150be86f 0x112f17000 + 35289199
4 QtWebEngineCore 0x00000001150d635a 0x112f17000 + 35386202
5 QtWebEngineCore 0x00000001150d6c9b 0x112f17000 + 35388571
6 QtWebEngineCore 0x00000001150d6964 0x112f17000 + 35387748
7 QtWebEngineCore 0x000000011512dd47 0x112f17000 + 35745095
8 libsystem_pthread.dylib 0x00007fff5562a661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5562a50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff55629bf9 thread_start + 13
Thread 15:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff55462a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5562b589 _pthread_cond_wait + 732
2 QtCore 0x000000011207586b 0x11204b000 + 174187
3 QtCore 0x00000001120757cc QWaitCondition::wait(QMutex*, QDeadlineTimer) + 108
4 QtWidgets 0x000000011179e772 0x111563000 + 2340722
5 QtCore 0x000000011206d073 0x11204b000 + 139379
6 libsystem_pthread.dylib 0x00007fff5562a661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff5562a50d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff55629bf9 thread_start + 13
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5545920a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff55458724 mach_msg + 60
2 QtWebEngineCore 0x00000001150be96d 0x112f17000 + 35289453
3 QtWebEngineCore 0x00000001150be86f 0x112f17000 + 35289199
4 QtWebEngineCore 0x000000011507269d 0x112f17000 + 34977437
5 QtWebEngineCore 0x000000011509b6c5 0x112f17000 + 35145413
6 QtWebEngineCore 0x00000001150edffc 0x112f17000 + 35483644
7 QtWebEngineCore 0x000000011512dd47 0x112f17000 + 35745095
8 libsystem_pthread.dylib 0x00007fff5562a661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5562a50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff55629bf9 thread_start + 13
Thread 17:
0 libsystem_kernel.dylib 0x00007fff55462a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5562b589 _pthread_cond_wait + 732
2 libopenblasp-r0.3.7.dev.dylib 0x0000000105e85c0b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff5562a661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff5562a50d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff55629bf9 thread_start + 13
Thread 18:
0 libsystem_kernel.dylib 0x00007fff55462a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5562b589 _pthread_cond_wait + 732
2 libopenblasp-r0.3.7.dev.dylib 0x0000000105e85c0b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff5562a661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff5562a50d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff55629bf9 thread_start + 13
Thread 19:
0 libsystem_kernel.dylib 0x00007fff55462a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5562b589 _pthread_cond_wait + 732
2 libopenblasp-r0.3.7.dev.dylib 0x0000000105e85c0b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff5562a661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff5562a50d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff55629bf9 thread_start + 13
Thread 20:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5545920a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff55458724 mach_msg + 60
2 QtWebEngineCore 0x00000001150be96d 0x112f17000 + 35289453
3 QtWebEngineCore 0x00000001150bea61 0x112f17000 + 35289697
4 QtWebEngineCore 0x00000001150d6368 0x112f17000 + 35386216
5 QtWebEngineCore 0x00000001150d6c9b 0x112f17000 + 35388571
6 QtWebEngineCore 0x00000001150d6904 0x112f17000 + 35387652
7 QtWebEngineCore 0x000000011512dd47 0x112f17000 + 35745095
8 libsystem_pthread.dylib 0x00007fff5562a661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5562a50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff55629bf9 thread_start + 13
Thread 21:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5545920a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff55458724 mach_msg + 60
2 QtWebEngineCore 0x00000001150be96d 0x112f17000 + 35289453
3 QtWebEngineCore 0x00000001150bea61 0x112f17000 + 35289697
4 QtWebEngineCore 0x00000001150d6368 0x112f17000 + 35386216
5 QtWebEngineCore 0x00000001150d6c9b 0x112f17000 + 35388571
6 QtWebEngineCore 0x00000001150d6874 0x112f17000 + 35387508
7 QtWebEngineCore 0x000000011512dd47 0x112f17000 + 35745095
8 libsystem_pthread.dylib 0x00007fff5562a661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5562a50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff55629bf9 thread_start + 13
Thread 22:
0 libsystem_pthread.dylib 0x00007fff55629bdc start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00007fff8da34380 rcx: 0x0000000104a39a48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x0000000104a39a80 rsp: 0x0000000104a39a48
r8: 0x0000000104a39f48 r9: 0x0000000000000010 r10: 0x00007fff8da343c8 r11: 0x0000000000000206
r12: 0x0000000000000307 r13: 0x00007fa67c110800 r14: 0x0000000000000006 r15: 0x000000000000002d
rip: 0x00007fff55462b66 rfl: 0x0000000000000206 cr2: 0x00000001047d07f8
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff546e7000 - 0x7fff54ad83b7 libobjc.A.dylib (723) /usr/lib/libobjc.A.dylib
0x7fff54ad9000 - 0x7fff54adafff libodfde.dylib (24.50.1) /usr/lib/libodfde.dylib
0x7fff54aeb000 - 0x7fff54aeffff libpam.2.dylib (22) /usr/lib/libpam.2.dylib
0x7fff54af2000 - 0x7fff54b26fff libpcap.A.dylib (79.20.1) /usr/lib/libpcap.A.dylib
0x7fff54ba5000 - 0x7fff54bc1ffb libresolv.9.dylib (65) /usr/lib/libresolv.9.dylib
0x7fff54bc3000 - 0x7fff54bfcff3 libsandbox.1.dylib (765.70.1) /usr/lib/libsandbox.1.dylib
0x7fff54bfd000 - 0x7fff54c0ffff libsasl2.2.dylib (211) /usr/lib/libsasl2.2.dylib
0x7fff54c10000 - 0x7fff54c11ff3 libspindump.dylib (252) /usr/lib/libspindump.dylib
0x7fff54c12000 - 0x7fff54d9fff7 libsqlite3.dylib (274.8.1) /usr/lib/libsqlite3.dylib
0x7fff54dfb000 - 0x7fff54e4effb libssl.35.dylib (22.50.3) /usr/lib/libssl.35.dylib
0x7fff54f73000 - 0x7fff54fd3ff3 libusrtcp.dylib (1229.70.2) /usr/lib/libusrtcp.dylib
0x7fff54fd4000 - 0x7fff54fd7ffb libutil.dylib (51.20.1) /usr/lib/libutil.dylib
0x7fff54fd8000 - 0x7fff54fe5ff3 libxar.1.dylib (417.1) /usr/lib/libxar.1.dylib
0x7fff54fe9000 - 0x7fff550d0fff libxml2.2.dylib (31.14) /usr/lib/libxml2.2.dylib
0x7fff550d1000 - 0x7fff550f9fff libxslt.1.dylib (15.14) /usr/lib/libxslt.1.dylib
0x7fff550fa000 - 0x7fff5510cffb libz.1.dylib (70) /usr/lib/libz.1.dylib
0x7fff551a8000 - 0x7fff551acff7 libcache.dylib (80) /usr/lib/system/libcache.dylib
0x7fff551ad000 - 0x7fff551b7ff3 libcommonCrypto.dylib (60118.50.1) /usr/lib/system/libcommonCrypto.dylib
0x7fff551b8000 - 0x7fff551bffff libcompiler_rt.dylib (62) /usr/lib/system/libcompiler_rt.dylib
0x7fff551c0000 - 0x7fff551c9ffb libcopyfile.dylib (146.50.5) /usr/lib/system/libcopyfile.dylib
0x7fff551ca000 - 0x7fff5524fffb libcorecrypto.dylib (562.70.3) /usr/lib/system/libcorecrypto.dylib
0x7fff552d7000 - 0x7fff55310ff7 libdispatch.dylib (913.60.3) /usr/lib/system/libdispatch.dylib
0x7fff55311000 - 0x7fff5532eff7 libdyld.dylib (551.5) /usr/lib/system/libdyld.dylib
0x7fff5532f000 - 0x7fff5532fffb libkeymgr.dylib (28) /usr/lib/system/libkeymgr.dylib
0x7fff55330000 - 0x7fff5533cff3 libkxld.dylib (4570.71.46) /usr/lib/system/libkxld.dylib
0x7fff5533d000 - 0x7fff5533dff7 liblaunch.dylib (1205.70.12) /usr/lib/system/liblaunch.dylib
0x7fff5533e000 - 0x7fff55342ffb libmacho.dylib (906) /usr/lib/system/libmacho.dylib
0x7fff55343000 - 0x7fff55345ff3 libquarantine.dylib (86) /usr/lib/system/libquarantine.dylib
0x7fff55346000 - 0x7fff55347ff3 libremovefile.dylib (45) /usr/lib/system/libremovefile.dylib
0x7fff55348000 - 0x7fff5535ffff libsystem_asl.dylib (356.70.1) /usr/lib/system/libsystem_asl.dylib
0x7fff55360000 - 0x7fff55360fff libsystem_blocks.dylib (67) /usr/lib/system/libsystem_blocks.dylib
0x7fff55361000 - 0x7fff553eaff7 libsystem_c.dylib (1244.50.9) /usr/lib/system/libsystem_c.dylib
0x7fff553eb000 - 0x7fff553eeffb libsystem_configuration.dylib (963.50.9) /usr/lib/system/libsystem_configuration.dylib
0x7fff553ef000 - 0x7fff553f2ffb libsystem_coreservices.dylib (51) /usr/lib/system/libsystem_coreservices.dylib
0x7fff553f3000 - 0x7fff553f4fff libsystem_darwin.dylib (1244.50.9) /usr/lib/system/libsystem_darwin.dylib
0x7fff553f5000 - 0x7fff553fbff7 libsystem_dnssd.dylib (878.70.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff553fc000 - 0x7fff55445ff7 libsystem_info.dylib (517.30.1) /usr/lib/system/libsystem_info.dylib
0x7fff55446000 - 0x7fff5546cff7 libsystem_kernel.dylib (4570.71.46) /usr/lib/system/libsystem_kernel.dylib
0x7fff5546d000 - 0x7fff554b8fcb libsystem_m.dylib (3147.50.1) /usr/lib/system/libsystem_m.dylib
0x7fff554b9000 - 0x7fff554d8ff7 libsystem_malloc.dylib (140.50.7) /usr/lib/system/libsystem_malloc.dylib
0x7fff554d9000 - 0x7fff55609ff7 libsystem_network.dylib (1229.70.2) /usr/lib/system/libsystem_network.dylib
0x7fff5560a000 - 0x7fff55614ffb libsystem_networkextension.dylib (767.70.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff55615000 - 0x7fff5561eff3 libsystem_notify.dylib (172) /usr/lib/system/libsystem_notify.dylib
0x7fff5561f000 - 0x7fff55626ff7 libsystem_platform.dylib (161.50.1) /usr/lib/system/libsystem_platform.dylib
0x7fff55627000 - 0x7fff55632fff libsystem_pthread.dylib (301.50.1) /usr/lib/system/libsystem_pthread.dylib
0x7fff55633000 - 0x7fff55636fff libsystem_sandbox.dylib (765.70.1) /usr/lib/system/libsystem_sandbox.dylib
0x7fff55637000 - 0x7fff55638ff3 libsystem_secinit.dylib (30) /usr/lib/system/libsystem_secinit.dylib
0x7fff55639000 - 0x7fff55640ff7 libsystem_symptoms.dylib (820.60.3) /usr/lib/system/libsystem_symptoms.dylib
0x7fff55641000 - 0x7fff55654fff libsystem_trace.dylib (829.70.1) /usr/lib/system/libsystem_trace.dylib
0x7fff55656000 - 0x7fff5565bff7 libunwind.dylib (35.3) /usr/lib/system/libunwind.dylib
0x7fff5565c000 - 0x7fff55689ff7 libxpc.dylib (1205.70.12) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 41
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 28467
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=655.7M resident=0K(0%) swapped_out_or_unallocated=655.7M(100%)
Writable regions: Total=4.7G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=4.7G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 3
Activity Tracing 256K 2
CG backing stores 16.5M 7
CG image 188K 29
CoreAnimation 168K 31
CoreGraphics 8K 2
CoreImage 240K 59
CoreUI image data 3700K 42
CoreUI image file 216K 5
Foundation 28K 3
Image IO 16K 2
Kernel Alloc Once 8K 2
MALLOC 4.2G 670
MALLOC guard page 48K 13
MALLOC_LARGE (reserved) 9244K 3 reserved VM address space (unallocated)
Memory Tag 242 12K 2
Memory Tag 251 68K 3
OpenGL GLSL 512K 7
PROTECTED_MEMORY 4K 2
STACK GUARD 88K 23
Stack 139.2M 26
Stack Guard 56.0M 2
VM_ALLOCATE 342.6M 540
__DATA 46.4M 500
__FONT_DATA 4K 2
__GLSLBUILTINS 2588K 2
__LINKEDIT 214.0M 142
__TEXT 441.7M 472
__UNICODE 560K 2
mapped file 165.9M 95
shared memory 828K 19
=========== ======= =======
TOTAL 5.6G 2681
TOTAL, minus reserved VM space 5.6G 2681
Log:
> mousemode rightmode zoom
> toolshed show "side view"
UCSF ChimeraX version: 0.91 (2019-08-30)
© 2016-2019 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-1.68.23
OpenGL renderer: AMD Radeon HD 6770M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
File attachment: SAGA-intro.cxc
Attachments (1)
Change History (4)
by , 6 years ago
| Attachment: | SAGA-intro.cxc added |
|---|
comment:1 by , 6 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Graphics |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash during script execution |
comment:2 by , 6 years ago
| Status: | accepted → feedback |
|---|
Hi Gabor,
Thanks for reporting this problem. Do you have a session file to use with the script, that has the named views and so forth that the script refers to?
--Eric
Eric Pettersen
UCSF Computer Graphics Lab
comment:3 by , 6 years ago
This crash was in OpenGL routine glReadPixels() and certainly indicates a graphics driver bug. ChimeraX was using a lot of memory 5.6 Gbytes and Apple graphics drivers are often unstable when a lot of graphics memory is being used. There is nothing we can do to fix this. It would not happen on a machine with a stable graphics driver.
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