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Opened 4 weeks ago
Closed 4 weeks ago
#19075 closed defect (duplicate)
ffmpeg: Permission denied
| Reported by: | Owned by: | Zach Pearson | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Build System | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.6.1-arm64-arm-64bit
ChimeraX Version: 1.10 (2025-06-26 08:57:52 UTC)
Description
Replace this text with list of actions that caused this problem to occur
Log:
UCSF ChimeraX version: 1.10 (2025-06-26)
© 2016-2025 Regents of the University of California. All rights reserved.
> open "/Users/reto G4/Dropbox/Mac
> (2)/Documents/Projects/Current_Projects/CDR2/CDR2_KLC/Structures/Structures/KLC_peptide_structures/CDR2_JIP1_TorsinA_SKIP.cxs"
> format session
Log from Thu Oct 2 14:10:14 2025UCSF ChimeraX version: 1.10 (2025-06-26)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/reto G4/Dropbox/Mac
> (2)/Documents/Projects/Current_Projects/CDR2/CDR2_KLC/Structures/AF3/AF3/CDR2_L_KLC1/CDR2(1-35)_KLC1(213-499)_fold_2025_04_30_19_18_BEST/fold_2025_04_30_19_18_model_0.cif"
Chain information for fold_2025_04_30_19_18_model_0.cif #1
---
Chain | Description
A | .
B | .
Computing secondary structure
> open "/Users/reto G4/Dropbox/Mac
> (2)/Documents/Projects/Current_Projects/CDR2/CDR2_KLC/Structures/Structures/KLC_peptide_structures/3zfw_mKLC2_SKIP.cif"
3zfw_mKLC2_SKIP.cif title:
Crystal structure of the TPR domain of kinesin light chain 2 in complex with a
tryptophan-acidic cargo peptide [more info...]
Chain information for 3zfw_mKLC2_SKIP.cif #2
---
Chain | Description | UniProt
A B | KINESIN LIGHT CHAIN 2 | Q91YS4_MOUSE 218-480
X Y | PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2 | PKHM2_HUMAN 203-212
3zfw_mKLC2_SKIP.cif mmCIF Assemblies
---
1| author_and_software_defined_assembly
2| author_and_software_defined_assembly
> ui tool show Matchmaker
> matchmaker #!2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_2025_04_30_19_18_model_0.cif, chain B (#1) with
3zfw_mKLC2_SKIP.cif, chain A (#2), sequence alignment score = 1220.3
RMSD between 220 pruned atom pairs is 0.659 angstroms; (across all 226 pairs:
1.048)
> show atoms
> open "/Users/reto G4/Dropbox/Mac
> (2)/Documents/Projects/Current_Projects/CDR2/CDR2_KLC/Structures/Structures/KLC_peptide_structures/6fv0_mKLC1_TorsinA.cif"
6fv0_mKLC1_TorsinA.cif title:
Crystal structure of the TPR domain of KLC1 in complex with the C-terminal
peptide of torsinA [more info...]
Chain information for 6fv0_mKLC1_TorsinA.cif #3
---
Chain | Description | UniProt
A | Kinesin light chain 1,Torsin-1A | Q5UE59_MOUSE 205-670, TOR1A_MOUSE 701-712
F | nanobody |
Non-standard residues in 6fv0_mKLC1_TorsinA.cif #3
---
PEG — di(hydroxyethyl)ether
2 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> ui tool show Matchmaker
> matchmaker #!2-3 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_2025_04_30_19_18_model_0.cif, chain B (#1) with
3zfw_mKLC2_SKIP.cif, chain A (#2), sequence alignment score = 1220.3
RMSD between 220 pruned atom pairs is 0.659 angstroms; (across all 226 pairs:
1.048)
Matchmaker fold_2025_04_30_19_18_model_0.cif, chain B (#1) with
6fv0_mKLC1_TorsinA.cif, chain A (#3), sequence alignment score = 1433.5
RMSD between 140 pruned atom pairs is 0.947 angstroms; (across all 259 pairs:
5.910)
> select #2/A
1794 atoms, 1824 bonds, 1 pseudobond, 226 residues, 2 models selected
> select #2/B
1786 atoms, 1816 bonds, 1 pseudobond, 225 residues, 2 models selected
> hide sel atoms
> hide sel cartoons
> select
9469 atoms, 9539 bonds, 4 pseudobonds, 1269 residues, 7 models selected
> hide sel atoms
> select clear
> select #3/A
2209 atoms, 2207 bonds, 2 pseudobonds, 307 residues, 2 models selected
Alignment identifier is 3/A
> select #3/A:703
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #3/A:703
11 atoms, 11 bonds, 1 residue, 1 model selected
> show sel atoms
> select #3/A:709
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #3/A:709
12 atoms, 12 bonds, 1 residue, 1 model selected
> show sel atoms
> select #3/A:708
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #3/A:708
12 atoms, 12 bonds, 1 residue, 1 model selected
> show sel atoms
[Repeated 1 time(s)]
> hide sel atoms
> select #3/A:709
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #3/A:709
12 atoms, 12 bonds, 1 residue, 1 model selected
> color sel byhetero
[Repeated 2 time(s)]
> style sel stick
Changed 12 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 0 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 0 atom styles
> color sel byhetero
> select #2/Y
81 atoms, 82 bonds, 10 residues, 1 model selected
> hide sel cartoons
> select #2/X
88 atoms, 89 bonds, 11 residues, 1 model selected
Alignment identifier is 2/X
> select #2/X:207
14 atoms, 15 bonds, 1 residue, 1 model selected
> select #2/X:207
14 atoms, 15 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1/A
293 atoms, 298 bonds, 35 residues, 1 model selected
Alignment identifier is 1/A
> select #1/A:10
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #1/A:10
11 atoms, 11 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1/A:19
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #1/A:19
12 atoms, 12 bonds, 1 residue, 1 model selected
> show sel atoms
> select clear
> select #2/A
1794 atoms, 1824 bonds, 1 pseudobond, 226 residues, 2 models selected
> color (#!2 & sel) light gray
> set bgColor white
> lighting simple
> lighting soft
> graphics silhouettes true
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting shadows true
> lighting shadows false
> select #3/A
2209 atoms, 2207 bonds, 2 pseudobonds, 307 residues, 2 models selected
Alignment identifier is 3/A
> select clear
> select #3/A:214-495
2067 atoms, 2100 bonds, 1 pseudobond, 259 residues, 2 models selected
> color (#!3 & sel) light gray
> hide #!2 models
> hide #1 models
> lighting simple
> lighting soft
> graphics silhouettes false
> graphics silhouettes true
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting shadows true
> lighting shadows false
> select clear
> select #3/F
927 atoms, 893 bonds, 168 residues, 1 model selected
> hide sel cartoons
[Repeated 1 time(s)]
> show sel cartoons
> hide sel cartoons
> ~label
> select clear
[Repeated 3 time(s)]
> hide #!3 cartoons
> show #!3 cartoons
> select #3/F
927 atoms, 893 bonds, 168 residues, 1 model selected
> hide sel cartoons
> select #3/A
2209 atoms, 2207 bonds, 2 pseudobonds, 307 residues, 2 models selected
Alignment identifier is 3/A
> select clear
[Repeated 1 time(s)]
> select #3/A:703
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #3/A:703-709
67 atoms, 69 bonds, 7 residues, 1 model selected
> select #3/A
2209 atoms, 2207 bonds, 2 pseudobonds, 307 residues, 2 models selected
> hide missing
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> hide missing bonds
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> ui tool show "Model Loops"
Populating font family aliases took 95 ms. Replace uses of missing font family
"Times" with one that exists to avoid this cost.
> delete missing
Missing or invalid "atoms" argument: invalid atoms specifier
> select clear
> hide sel
[Repeated 1 time(s)]
> show #!2 models
> hide #!3 models
> show #1 models
> hide #!2 models
> select #1/B
2291 atoms, 2330 bonds, 287 residues, 1 model selected
> color sel light gray
> graphics silhouettes false
> graphics silhouettes true
> lighting simple
> lighting soft
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting shadows true
> lighting shadows false
> select clear
> show #!2 models
> hide #1 models
> show #1 models
> hide #!2 models
> select #1/A
293 atoms, 298 bonds, 35 residues, 1 model selected
Alignment identifier is 1/A
> select #1/A:26
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1/A:26-35
74 atoms, 73 bonds, 10 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> show #!2 models
> show #!3 models
> hide #!3 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> show #!2 models
> hide #1 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> show #1 models
> hide #!2 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> select #1/A
293 atoms, 298 bonds, 35 residues, 1 model selected
Destroying pre-existing alignment with identifier 1/A
Alignment identifier is 1/A
> select #1/A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:1-8
62 atoms, 61 bonds, 8 residues, 1 model selected
> hide sel cartoons
> select #1/A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:1-25
219 atoms, 224 bonds, 25 residues, 1 model selected
> ui tool show "Color Actions"
> color sel purple
> color sel orchid
> color sel purple
> select clear
> show #!2 models
> show #!3 models
> hide #1 models
> show #1 models
> hide #!3 models
> select #1/A
293 atoms, 298 bonds, 35 residues, 1 model selected
> ui tool show "Color Actions"
> color sel dark orchid
> color sel pale violet red
> color sel orchid
[Repeated 1 time(s)]
> color sel purple
> color sel thistle
> color sel purple
[Repeated 1 time(s)]
> select clear
> select #3/A
2209 atoms, 2207 bonds, 2 pseudobonds, 307 residues, 2 models selected
> show #!3 models
> hide #!2 models
> hide #1 models
Alignment identifier is 3/A
> select #3/A:702
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #3/A:702-712
99 atoms, 101 bonds, 11 residues, 1 model selected
> color sel light sea green
> color sel orange
> color sel forest green
> select clear
> show #!2 models
> show #1 models
> hide #1 models
> hide #!3 models
> select #2/X
88 atoms, 89 bonds, 11 residues, 1 model selected
> color sel medium blue
> select clear
> show #!3 models
> show #1 models
> ui tool show "Side View"
> hide #!2 models
> hide #1 models
> show #!2 models
> hide #!3 models
> show #!3 models
> hide #!2 models
> show #!2 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> hide sel
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> show #!3 models
> hide #!3 models
> hide #!2 models
> show #!2 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #1 models
> select #1/B
2291 atoms, 2330 bonds, 287 residues, 1 model selected
Alignment identifier is 1/B
> select #1/B:232
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1/B:232-236
37 atoms, 37 bonds, 5 residues, 1 model selected
> hide #!2 models
> show #!2 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> select #1/B:224
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #1/B:224-231
58 atoms, 57 bonds, 8 residues, 1 model selected
> select #1/B:214
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/B:214-224
98 atoms, 100 bonds, 11 residues, 1 model selected
> select #1/B:185
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #1/B:185-287
831 atoms, 846 bonds, 103 residues, 1 model selected
> select #1/B:184
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1/B:184-225
359 atoms, 366 bonds, 42 residues, 1 model selected
> select #1/B:228
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1/B:228
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1/B:214
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/B:214-223
92 atoms, 94 bonds, 10 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> select #1/B:224
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #1/B:224-234
82 atoms, 82 bonds, 11 residues, 1 model selected
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide sel cartoons
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #1 models
> show #1 models
> hide #!2 models
> show #!2 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #!2 models
> show #!2 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> select #1/B:244
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #1/B:244-248
36 atoms, 35 bonds, 5 residues, 1 model selected
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> select #1/B:249
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/B:249-254
42 atoms, 42 bonds, 6 residues, 1 model selected
> select #1/B:243
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #1/B:235-243
73 atoms, 76 bonds, 9 residues, 1 model selected
> select #1/B:235
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #1/B:235-238
29 atoms, 29 bonds, 4 residues, 1 model selected
> hide sel cartoons
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> select #1/B:259
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #1/B:259-262
29 atoms, 29 bonds, 4 residues, 1 model selected
> hide #1 models
> show #1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> select #1/B:287
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1/B:275-287
103 atoms, 102 bonds, 13 residues, 1 model selected
> select #1/B:285
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #1/B:285-287
21 atoms, 20 bonds, 3 residues, 1 model selected
> select #1/B:283
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1/B:283-287
39 atoms, 38 bonds, 5 residues, 1 model selected
> hide sel cartoons
> hide #1 models
> show #1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> color sel byhetero
[Repeated 1 time(s)]
> select
9469 atoms, 9539 bonds, 4 pseudobonds, 1269 residues, 5 models selected
> color sel & #1#!2 byhetero
[Repeated 1 time(s)]
> select clear
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!2 models
> hide #!3 models
> show #!3 models
> show #!2 models
> hide #!2 models
> hide #!3 models
> show #!2 models
> hide #1 models
> show #!3 models
> hide #!2 models
> show #!2 models
> hide #!3 models
> show #1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> show #!3 models
> hide #!3 models
> hide #!2 models
> show #!2 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> select #1/B:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/B:1-22
178 atoms, 181 bonds, 22 residues, 1 model selected
> select #1/B:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/B:1-39
311 atoms, 316 bonds, 39 residues, 1 model selected
> select #1/B:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/B:1-38
301 atoms, 305 bonds, 38 residues, 1 model selected
> hide sel cartoons
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #1 models
> show #1 models
> hide #1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> select #3/A
2209 atoms, 2207 bonds, 2 pseudobonds, 307 residues, 2 models selected
Alignment identifier is 3/A
> select clear
[Repeated 2 time(s)]
> select #3/A:214-247
267 atoms, 270 bonds, 34 residues, 1 model selected
> select clear
> select #3/A:214-250
289 atoms, 293 bonds, 37 residues, 1 model selected
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide sel cartoons
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> show #1 models
> hide #!2 models
> hide #!3 models
> show #!2 models
> hide #1 models
> show #1 models
> hide #1 models
> show #!3 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> show #1 models
> hide #!2 models
> hide #!3 models
> show #!2 models
> hide #1 models
> show #!3 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> show #1 models
> hide #!2 models
> hide #!3 models
> show #!3 models
> show #!2 models
> hide #!3 models
> hide #!2 models
> show #!2 models
> show #!3 models
> hide #!2 models
> hide #!3 models
> show #!2 models
> hide #1 models
> show #!3 models
> hide #!2 models
> show #!2 models
> hide #!3 models
> show #1 models
> hide #!2 models
> open "/Users/reto G4/Dropbox/Mac
> (2)/Documents/Projects/Current_Projects/CDR2/CDR2_KLC/Structures/Structures/KLC_peptide_structures/6FUZ_mKLC1_JIP1.cif"
6FUZ_mKLC1_JIP1.cif title:
Crystal structure of the TPR domain of KLC1 in complex with the C-terminal
peptide of JIP1 [more info...]
Chain information for 6FUZ_mKLC1_JIP1.cif #4
---
Chain | Description | UniProt
A | Kinesin light chain 1,Kinesin light chain 1,C-Jun-amino-terminal kinase-interacting protein 1 | Q5UE59_MOUSE 201-670
N | nanobody |
Non-standard residues in 6FUZ_mKLC1_JIP1.cif #4
---
GOL — glycerol (glycerin; propane-1,2,3-triol)
> close #4
> show #!2 models
> show #!3 models
> save "/Users/reto G4/Dropbox/Mac
> (2)/Documents/Projects/Current_Projects/CDR2/CDR2_KLC/Structures/Structures/KLC_peptide_structures/CDR2_TorsinA_SKIP.cxs"
> open "/Users/reto G4/Dropbox/Mac
> (2)/Documents/Projects/Current_Projects/CDR2/CDR2_KLC/Structures/Structures/KLC_peptide_structures/6FUZ_mKLC1_JIP1.cif"
6FUZ_mKLC1_JIP1.cif title:
Crystal structure of the TPR domain of KLC1 in complex with the C-terminal
peptide of JIP1 [more info...]
Chain information for 6FUZ_mKLC1_JIP1.cif #4
---
Chain | Description | UniProt
A | Kinesin light chain 1,Kinesin light chain 1,C-Jun-amino-terminal kinase-interacting protein 1 | Q5UE59_MOUSE 201-670
N | nanobody |
Non-standard residues in 6FUZ_mKLC1_JIP1.cif #4
---
GOL — glycerol (glycerin; propane-1,2,3-triol)
> ui tool show Matchmaker
> matchmaker #!2-4 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_2025_04_30_19_18_model_0.cif, chain B (#1) with
3zfw_mKLC2_SKIP.cif, chain A (#2), sequence alignment score = 1220.3
RMSD between 220 pruned atom pairs is 0.659 angstroms; (across all 226 pairs:
1.048)
Matchmaker fold_2025_04_30_19_18_model_0.cif, chain B (#1) with
6fv0_mKLC1_TorsinA.cif, chain A (#3), sequence alignment score = 1433.5
RMSD between 140 pruned atom pairs is 0.947 angstroms; (across all 259 pairs:
5.910)
Matchmaker fold_2025_04_30_19_18_model_0.cif, chain B (#1) with
6FUZ_mKLC1_JIP1.cif, chain A (#4), sequence alignment score = 1447.9
RMSD between 117 pruned atom pairs is 0.889 angstroms; (across all 259 pairs:
6.059)
> hide #!3 models
> hide #!2 models
> hide #1 models
> ~label
> select #4/A:397
11 atoms, 11 bonds, 1 residue, 1 model selected
> delete sel
[Repeated 1 time(s)]
> hide sel
> select clear
> hide sel
> select #4/N
873 atoms, 886 bonds, 119 residues, 1 model selected
> hide sel cartoons
> hide sel atoms
> select #4/A:399@CG
1 atom, 1 residue, 1 model selected
> hide sel atoms
> hide sel
> hide sel atoms
[Repeated 6 time(s)]
> hide sel
> select #4/A
2147 atoms, 2174 bonds, 2 pseudobonds, 274 residues, 2 models selected
Alignment identifier is 4/A
> select #4/A:399
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #4/A:399
9 atoms, 8 bonds, 1 residue, 1 model selected
> hide sel atoms
> select clear
[Repeated 1 time(s)]
> select #4/A:214-495
2071 atoms, 2104 bonds, 1 pseudobond, 259 residues, 2 models selected
> select clear
> select #4/A:214-495
2071 atoms, 2104 bonds, 1 pseudobond, 259 residues, 2 models selected
> color (#!4 & sel) light gray
> lighting simple
> lighting shadows true
> lighting shadows false
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> lighting simple
> lighting soft
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting shadows true
> lighting shadows false
> select #4/A:704
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #4/A:704-711
69 atoms, 70 bonds, 8 residues, 1 model selected
> show #!3 models
> hide #!3 models
> show #!2 models
> hide #!2 models
> show #1 models
> hide #1 models
> color sel orange
> color sel orange red
> select #4/A:709
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #4/A:709
12 atoms, 12 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel byhetero
> select clear
> show #!3 models
> hide #!4 models
> show #!4 models
> show #!2 models
> show #1 models
> hide #!3 models
> hide #!2 models
> hide #1 models
> show #!3 models
> hide #!4 models
> show #!2 models
> hide #!3 models
> show #1 models
> hide #!2 models
> show #!2 models
> show #!3 models
> show #!4 models
> hide #!3 models
> hide #!2 models
> hide #1 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> select clear
> select #4/A:214-248
275 atoms, 278 bonds, 35 residues, 1 model selected
> hide #!4 models
> show #!4 models
> select clear
> select #4/A:214-250
293 atoms, 297 bonds, 37 residues, 1 model selected
> hide #!4 models
> show #!4 models
> hide #!3 models
> show #!3 models
> hide sel cartoons
> show #1 models
> hide #!3 models
> hide #!4 models
> select #1/A:18
14 atoms, 15 bonds, 1 residue, 1 model selected
> show sel atoms
> select clear
> show #!2 models
> show #!3 models
> show #!4 models
> hide #!2 models
> hide #!3 models
> hide #!4 models
> show #!2 models
> show #!3 models
> hide #!3 models
> hide #!2 models
> show #!2 models
> show #!3 models
> show #!4 models
> hide #!2 models
> hide #!3 models
> hide #!4 models
> show #!2 models
> hide #1 models
> show #!3 models
> hide #!2 models
> hide #!3 models
> show #!4 models
> show #!3 models
> show #!2 models
> show #1 models
> save "/Users/reto G4/Dropbox/Mac
> (2)/Documents/Projects/Current_Projects/CDR2/CDR2_KLC/Structures/Structures/KLC_peptide_structures/CDR2_JIP1_TorsinA_SKIP.cxs"
——— End of log from Thu Oct 2 14:10:14 2025 ———
> view name session-start
opened ChimeraX session
> close #3
> close #2
> close #1
> movie record
> wait 50
> turn x 60 150
> turn x -60 150
> wait 50
> movie stop
> movie encode horizontal_oscillate.mp4 fps 30 quality high
Expected ',' or a keyword
> turn y angle 90 frames 100
> movie record
> wait 50
> turn x angle 60 frames 150
> turn x angle -60 frames 150
> wait 50
> movie stop
> movie encode horizontal_oscillate.mp4 fps 30 quality high
Expected ',' or a keyword
> movie record
> wait 50
> turn x angle 60 frames 150
> turn x angle -60 frames 150
> wait 50
> movie stop
> movie encode horizontal_oscillate.mp4 fps 30
Expected ',' or a keyword
> movie record
> wait 50
> turn x angle 60 frames 150
> turn x angle -60 frames 150
> wait 50
> movie stop
> movie encode horizontal_oscillate.gif fps 30
Expected ',' or a keyword
> movie encode horizontal_oscillate.mp4 fps 30 codec h264
Expected ',' or a keyword
> movie encode horizontal_oscillate.mp4 fps 30 codec h264
Expected ',' or a keyword
> movie encode horizontal_oscillate.mp4 fps 30 codec h264
Expected ',' or a keyword
> movie encode horizontal_oscillate.mp4 fps 30 codec h264
Expected ',' or a keyword
> movie encode horizontal_oscillate.mp4 fps 30 codec h264
Expected ',' or a keyword
> movie encode horizontal_oscillate.mp4 fps 30 codec h264
Expected ',' or a keyword
> movie record
> wait 50
> turn x angle 60 frames 150
> turn x angle -60 frames 150
> wait 50
> movie stop
> movie encode output horizontal_oscillate.mp4 framerate 30
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/cmd_line/tool.py", line 319, in execute
cmd.run(cmd_text)
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3221, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/movie/moviecmd.py", line 202, in movie_encode
encode_op(session, output[-1], format, quality, qscale, bitrate,
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/movie/moviecmd.py", line 260, in encode_op
movie.start_encoding(output, f['ffmpeg_name'], output_size, f['ffmpeg_codec'],
"yuv420p", f['size_restriction'],
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/movie/movie.py", line 324, in start_encoding
self.encoder.run(Status_Reporter())
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/movie/encode.py", line 232, in run
p = Popen(self.arg_list, stdin=DEVNULL, stdout=PIPE, stderr=PIPE)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/subprocess.py",
line 1026, in __init__
self._execute_child(args, executable, preexec_fn, close_fds,
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/subprocess.py",
line 1950, in _execute_child
raise child_exception_type(errno_num, err_msg, err_filename)
PermissionError: [Errno 13] Permission denied:
'/Applications/ChimeraX-1.10.app/Contents/bin/ffmpeg'
PermissionError: [Errno 13] Permission denied:
'/Applications/ChimeraX-1.10.app/Contents/bin/ffmpeg'
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/subprocess.py",
line 1950, in _execute_child
raise child_exception_type(errno_num, err_msg, err_filename)
See log for complete Python traceback.
OpenGL version: 4.1 Metal - 89.4
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro18,1
Model Number: MK193PO/A
Chip: Apple M1 Pro
Total Number of Cores: 10 (8 performance and 2 efficiency)
Memory: 16 GB
System Firmware Version: 11881.140.96
OS Loader Version: 11881.140.96
Software:
System Software Overview:
System Version: macOS 15.6.1 (24G90)
Kernel Version: Darwin 24.6.0
Time since boot: 22 days, 9 hours, 48 minutes
Graphics/Displays:
Apple M1 Pro:
Chipset Model: Apple M1 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 16
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3456 x 2234 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 1.0.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.4.0
babel: 2.17.0
beautifulsoup4: 4.13.3
blockdiag: 3.0.0
blosc2: 3.5.0
build: 1.2.2.post1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.2
ChimeraX-AddCharge: 1.5.19
ChimeraX-AddH: 2.2.7
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.20.2
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Aniso: 1.1.4
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.60.7
ChimeraX-AtomicLibrary: 14.1.18
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.5.1
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.10
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.1
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.6.2
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.2.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.10.1
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.19
ChimeraX-ModelPanel: 1.5.1
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14.1
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.10
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.3
ChimeraX-ProfileGrids: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.7
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.1
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.45.2
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.2
coverage: 7.9.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.12
debugpy: 1.8.14
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.0
filelock: 3.18.0
fonttools: 4.58.4
funcparserlib: 2.0.0a0
glfw: 2.9.0
grako: 3.16.5
h5py: 3.14.0
html2text: 2024.2.26
idna: 3.10
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.1.0
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.7
jedi: 0.19.1
Jinja2: 3.1.6
jupyter_client: 8.6.3
jupyter_core: 5.8.1
jupyterlab_widgets: 3.0.15
kiwisolver: 1.4.8
line_profiler: 4.2.0
lxml: 5.3.1
lz4: 4.4.4
MarkupSafe: 3.0.2
matplotlib: 3.10.1
matplotlib-inline: 0.1.7
msgpack: 1.1.0
ndindex: 1.10.0
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.11.0
numpy: 1.26.4
OpenMM: 8.2.0
openvr: 1.26.701
packaging: 24.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.4.0
pip: 25.0.1
pkginfo: 1.11.1
platformdirs: 4.3.8
pluggy: 1.6.0
prompt_toolkit: 3.0.51
psutil: 7.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.32
Pygments: 2.18.0
pynmrstar: 3.3.5
pynrrd: 1.0.0
PyOpenGL: 3.1.9
PyOpenGL-accelerate: 3.1.9
pyopenxr: 1.1.4501
pyparsing: 3.2.3
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.8.1
PyQt6-Qt6: 6.8.2
PyQt6-WebEngine-commercial: 6.8.0
PyQt6-WebEngine-Qt6: 6.8.2
PyQt6_sip: 13.10.0
pytest: 8.4.1
pytest-cov: 6.2.1
python-dateutil: 2.9.0.post0
pytz: 2025.2
pyzmq: 27.0.0
qtconsole: 5.5.2
QtPy: 2.4.3
qtshim: 1.1
RandomWords: 0.4.0
requests: 2.32.3
roman-numerals-py: 3.1.0
scipy: 1.14.0
setuptools: 78.1.0
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.7
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.1.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.7.1
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2025.3.13
tinyarray: 1.2.4
tornado: 6.5.1
traitlets: 5.14.3
typing_extensions: 4.14.0
tzdata: 2025.2
urllib3: 2.5.0
wcwidth: 0.2.13
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.14
Change History (2)
comment:1 by , 4 weeks ago
| Component: | Unassigned → Build System |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → ffmpeg: Permission denied |
comment:2 by , 4 weeks ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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