id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 1848 Clipper not a supported wheel on this platform chimerax-bug-report@… Conrad Huang "{{{ The following bug report has been submitted: Platform: Linux-4.15.0-46-generic-x86_64-with-debian-stretch-sid ChimeraX Version: 0.8 (2018-11-28) Description (Describe the actions that caused this problem to occur here) Log: Startup Messages --- warning | Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/info.py"", line 414, in initialize api._api_caller.initialize(api, session, self) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py"", line 1198, in initialize return cls._get_func(api, ""initialize"")(session, bi) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/registration/__init__.py"", line 41, in initialize nag(session) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/registration/nag.py"", line 28, in nag if not check_registration(logger=session.logger): File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/registration/nag.py"", line 49, in check_registration return _check_expiration(param, logger) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/registration/nag.py"", line 131, in _check_expiration expires = datetime.strptime(param[""Expires""], TimeFormat) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/_strptime.py"", line 565, in _strptime_datetime tt, fraction = _strptime(data_string, format) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/_strptime.py"", line 362, in _strptime (data_string, format)) ValueError: time data 'Tue Apr 14 12:06:50 2020' does not match format '%a %b %d %H:%M:%S %Y' note | Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py"", line 338, in __init__ self.init_available_from_cache(logger) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py"", line 445, in init_available_from_cache abc.load_from_cache() File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/available.py"", line 61, in load_from_cache b = _build_bundle(d) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/available.py"", line 242, in _build_bundle keywords = _extract_extra_keywords(keywords) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/installed.py"", line 270, in _extract_extra_keywords all_kwds = [k.strip() for k in kwds.split(',')] AttributeError: 'list' object has no attribute 'split' UCSF ChimeraX version: 0.8 (2018-11-28) How to cite UCSF ChimeraX > toolshed show ""Remote Control"" xmlrpc server running at 127.0.0.1 on port 42184 > open /home/ricardo/tilipo33_publicação/dock_files/yasara/5dae.cif 5dae.cif title: Kazal type inhibitor from salivary glands of Aedes aegypti mosquito [more info...] Chain information for 5dae.cif #1 --- Chain | Description A B | AAEL006007-Pa 5dae.cif mmCIF Assemblies --- 1| author_and_software_defined_assembly 2| author_and_software_defined_assembly > style selAtoms stick Changed 927 atom styles > hide selAtoms ribbons > style selAtoms stick Changed 927 atom styles > show selAtoms > toolshed show ""Volume Viewer"" > open /home/ricardo/tilipo33_publicação/dock_files/yasara/5dae.pdb 5dae.pdb title: Kazal type inhibitor from salivary glands of aedes aegypti mosquito [more info...] Chain information for 5dae.pdb #2 --- Chain | Description A B | kazal domain-containing peptide > show selAtoms surfaces > hide #!2.1 models > hide #!2.2 models > hide #!2 models > show #!2 models > hide #!1.2 models > hide #!1.1 models > show #!2.1 models > show #!2.2 models > hide #!2.2 models > hide #!2.1 models > hide #!2 models > show #!1.1 models > hide #!1.1 models > show #!1 models > hide #!1 models > show #!1 models > show #!1.1 models > show #!1.2 models > hide #1.2 target m > hide #1.1 target m > close #1.1 > close #1.2 > close #2.1 > close #2.2 > show #!2 models > hide #!2 models > show #!2 models > select #1/A 473 atoms, 439 bonds selected > ~select #2 473 atoms, 439 bonds selected > select #1 927 atoms, 850 bonds selected > select #2 927 atoms, 850 bonds selected > ~select #1 927 atoms, 850 bonds selected > select #1 927 atoms, 850 bonds selected > select #2 927 atoms, 850 bonds selected > close #2 > view cofr false > view orient cofr false > toolshed show ""Cage Builder"" Downloading bundle ChimeraX_Clipper-0.4.0-cp37-cp37m-linux_x86_64.whl unloading module chimerax.clipper Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/ui/widgets/htmlview.py"", line 362, in download_finished session=self.session) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py"", line 548, in install_bundle results = self._pip_install(bundle, per_user=per_user, reinstall=reinstall) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py"", line 842, in _pip_install results = self._run_pip(command) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py"", line 869, in _run_pip raise RuntimeError(s) RuntimeError: ERROR: Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py"", line 338, in __init__ self.init_available_from_cache(logger) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py"", line 445, in init_available_from_cache abc.load_from_cache() File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/available.py"", line 61, in load_from_cache b = _build_bundle(d) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/available.py"", line 242, in _build_bundle keywords = _extract_extra_keywords(keywords) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/installed.py"", line 270, in _extract_extra_keywords all_kwds = [k.strip() for k in kwds.split(',')] AttributeError: 'list' object has no attribute 'split' ChimeraX_Clipper-0.4.0-cp37-cp37m-linux_x86_64.whl is not a supported wheel on this platform. You are using pip version 18.1, however version 19.0.3 is available. You should consider upgrading via the 'pip install --upgrade pip' command. RuntimeError: ERROR: Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py"", line 338, in __init__ self.init_available_from_cache(logger) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py"", line 445, in init_available_from_cache abc.load_from_cache() File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/available.py"", line 61, in load_from_cache b = _build_bundle(d) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/available.py"", line 242, in _build_bundle keywords = _extract_extra_keywords(keywords) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/installed.py"", line 270, in _extract_extra_keywords all_kwds = [k.strip() for k in kwds.split(',')] AttributeError: 'list' object has no attribute 'split' ChimeraX_Clipper-0.4.0-cp37-cp37m-linux_x86_64.whl is not a supported wheel on this platform. You are using pip version 18.1, however version 19.0.3 is available. You should consider upgrading via the 'pip install --upgrade pip' command. File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py"", line 869, in _run_pip raise RuntimeError(s) See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 384.130 OpenGL renderer: Quadro K4000/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation }}} " defect closed normal Tool Shed not a bug Tristan Croll all ChimeraX