MatchMaker: 'CategorizedOptionsPanel' object has no attribute 'currentIndex'

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-15.5-arm64-arm-64bit
ChimeraX Version: 1.10rc202506100450 (2025-06-10 04:50:02 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
UCSF ChimeraX version: 1.10rc202506100450 (2025-06-10)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/georgiawilson/Downloads/2mzw.cif format mmcif

2mzw.cif title:  
Staphylococcus aureus FusB:EF-GC3 complex [more info...]  
  
Chain information for 2mzw.cif #1  
---  
Chain | Description | UniProt  
A | Elongation factor G | W8UT26_STAAU 401-692  
B | Far1 | Q8GNY5_STAAU 1-213  
  
Non-standard residues in 2mzw.cif #1  
---  
ZN — zinc ion  
  

> split

Split 2mzw.cif (#1) into 2 models  
Chain information for 2mzw.cif A #1.1  
---  
Chain | Description  
A | No description available  
  
Chain information for 2mzw.cif B #1.2  
---  
Chain | Description  
B | No description available  
  

> select add #1.2

3579 atoms, 3611 bonds, 2 pseudobonds, 214 residues, 2 models selected  

> select subtract #1.2

Nothing selected  

> select add #1.2

3579 atoms, 3611 bonds, 2 pseudobonds, 214 residues, 2 models selected  

> set bgColor white

> color (#!1.2 & sel) cornflower blue

> select subtract #1.2

Nothing selected  

> select add #1.1

4471 atoms, 4515 bonds, 292 residues, 1 model selected  

> color sel forest green

> select subtract #1.1

Nothing selected  

> select #1.2: 155

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select #1.1: 155

Nothing selected  

> select #1.1: 525

15 atoms, 14 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel ball

Changed 15 atom styles  

> select #1.1: 526

14 atoms, 13 bonds, 1 residue, 1 model selected  

> style sel ball

Changed 14 atom styles  

> style sel ball

Changed 14 atom styles  

> style sel ball

Changed 14 atom styles  

> show sel atoms

> select #1.1: 524

20 atoms, 20 bonds, 1 residue, 1 model selected  

> style sel ball

Changed 20 atom styles  

> show sel atoms

> color sel byhetero

> select up

64 atoms, 64 bonds, 4 residues, 1 model selected  

> select #1.1: 524

20 atoms, 20 bonds, 1 residue, 1 model selected  

> select #1.1: 523-526

64 atoms, 64 bonds, 4 residues, 1 model selected  

> style sel ball

Changed 64 atom styles  

> show sel atoms

> color sel byhetero

> select #1.2: 183-187]

Expected an objects specifier or a keyword  

> select #1.2: 183-187

84 atoms, 84 bonds, 5 residues, 1 model selected  

> show sel atoms

> style sel ball

Changed 84 atom styles  

> color sel byhetero

> hbonds sel reveal true

10 hydrogen bonds found  

> interfaces select & ~solvent

Missing or invalid "atoms" argument: invalid atoms specifier  

> select #1.1: 523-526

64 atoms, 64 bonds, 4 residues, 1 model selected  

> hbonds sel reveal true

9 hydrogen bonds found  

> style sel ball

Changed 64 atom styles  

> select #1.1

4471 atoms, 4515 bonds, 9 pseudobonds, 292 residues, 2 models selected  

> style sel ball

Changed 4471 atom styles  

> color sel byhetero

> select subtract #1.1

Nothing selected  

> select add #1.1

4471 atoms, 4515 bonds, 9 pseudobonds, 292 residues, 2 models selected  

> ui mousemode right distance

[Repeated 1 time(s)]

> distance #1.1/A:523@OE2 #1.2/B:183@HE2

Distance between 2mzw.cif A #1.1/A GLU 523 OE2 and 2mzw.cif B #1.2/B LYS 183
HE2: 2.977Å  

> distance #1.1/A:523@OE2 #1.2/B:183@HB3

Distance between 2mzw.cif A #1.1/A GLU 523 OE2 and 2mzw.cif B #1.2/B LYS 183
HB3: 2.345Å  

> ~hbonds

> ui mousemode right distance

> ui mousemode right select

> select clear

Drag select of 19 residues, 5 atoms, 4 bonds  

> select add #1.2

3816 atoms, 3611 bonds, 2 pseudobonds, 231 residues, 3 models selected  

> select subtract #1.2

237 atoms, 17 residues, 1 model selected  

> select add #1.1

4471 atoms, 4515 bonds, 292 residues, 1 model selected  

> select subtract #1.1

Nothing selected  
Drag select of 4 residues  
Drag select of 3 residues  
Drag select of 1 atoms  

> ui mousemode right select

> ui mousemode right translate

> select add #1.2

3579 atoms, 3611 bonds, 2 pseudobonds, 214 residues, 2 models selected  

> select subtract #1.2

Nothing selected  

> select #1.1

4471 atoms, 4515 bonds, 292 residues, 1 model selected  

> select #1.1:564

10 atoms, 9 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel ball

Changed 10 atom styles  

> style sel ball

Changed 10 atom styles  

> select #1.1:565

22 atoms, 21 bonds, 1 residue, 1 model selected  

> select #1.2: 182

16 atoms, 15 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel ball

Changed 16 atom styles  

> color sel byhetero

> select #1.2: 182

16 atoms, 15 bonds, 1 residue, 1 model selected  

> select #1.1: 519

7 atoms, 6 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel ball

Changed 7 atom styles  

> hide sel cartoons

> select #1.1: 518

14 atoms, 13 bonds, 1 residue, 1 model selected  

> show sel atoms

> color sel byhetero

> select #1.2: 211

22 atoms, 21 bonds, 1 residue, 1 model selected  

> select #1.2: 211

22 atoms, 21 bonds, 1 residue, 1 model selected  

> show sel atoms

[Repeated 1 time(s)]

> color sel byhetero

> style sel ball

Changed 22 atom styles  

> show sel cartoons

> select #1.1: 518

14 atoms, 13 bonds, 1 residue, 1 model selected  

> show sel cartoons

[Repeated 1 time(s)]

> hide sel cartoons

> show sel cartoons

> hide sel cartoons

> show sel cartoons

> select #1.1: 519

7 atoms, 6 bonds, 1 residue, 1 model selected  

> show sel cartoons

> ui mousemode right distance

> distance #1.2/B:184@HZ3 #1.1/A:518@OG1

Distance between 2mzw.cif B #1.2/B LYS 184 HZ3 and 2mzw.cif A #1.1/A THR 518
OG1: 12.047Å  

> ~distance #1.2/B:184@HZ3 #1.1/A:518@OG1

> distance #1.1/A:518@OG1 #1.2/B:211@HD2

Distance between 2mzw.cif A #1.1/A THR 518 OG1 and 2mzw.cif B #1.2/B LYS 211
HD2: 4.406Å  

> ~distance #1.1/A:518@OG1 #1.2/B:211@HD2

> ui mousemode right translate

> select #1.1: 519

7 atoms, 6 bonds, 1 residue, 1 model selected  

> show sel atoms

> show sel cartoons

> hide sel cartoons

> select #1.2: 158

14 atoms, 13 bonds, 1 residue, 1 model selected  

> style sel ball

Changed 14 atom styles  

> color sel byhetero

> ui mousemode right distance

> distance #1.2/B:211@HD2 #1.1/A:519@O

Distance between 2mzw.cif B #1.2/B LYS 211 HD2 and 2mzw.cif A #1.1/A GLY 519
O: 6.737Å  

> ~distance #1.2/B:211@HD2 #1.1/A:519@O

> select add #1.2

3579 atoms, 3611 bonds, 2 pseudobonds, 214 residues, 2 models selected  

> select subtract #1.2

Nothing selected  

> distance #1.1/A:519@O #1.2/B:187@HB2

Distance between 2mzw.cif A #1.1/A GLY 519 O and 2mzw.cif B #1.2/B TYR 187
HB2: 3.319Å  

> distance #1.1/A:519@O #1.2/B:158@HG22

Distance between 2mzw.cif A #1.1/A GLY 519 O and 2mzw.cif B #1.2/B THR 158
HG22: 3.350Å  

> distance #1.1/A:525@OE1 #1.2/B:182@HG12

Distance between 2mzw.cif A #1.1/A GLU 525 OE1 and 2mzw.cif B #1.2/B VAL 182
HG12: 2.048Å  

> distance #1.1/A:525@OE1 #1.2/B:183@HG3

Distance between 2mzw.cif A #1.1/A GLU 525 OE1 and 2mzw.cif B #1.2/B LYS 183
HG3: 3.838Å  

> ~distance #1.1/A:525@OE1 #1.2/B:183@HG3

> distance #1.1/A:525@OE1 #1.2/B:182@HG23

Distance between 2mzw.cif A #1.1/A GLU 525 OE1 and 2mzw.cif B #1.2/B VAL 182
HG23: 4.269Å  

> ~distance #1.1/A:525@OE1 #1.2/B:182@HG23

> distance #1.1/A:525@OE1 #1.1/A:563@HZ1

Distance between 2mzw.cif A #1.1/A GLU 525 OE1 and LYS 563 HZ1: 3.831Å  

> ~distance #1.1/A:525@OE1 #1.1/A:563@HZ1

> distance #1.1/A:525@OE1 #1.2/B:183@HB2

Distance between 2mzw.cif A #1.1/A GLU 525 OE1 and 2mzw.cif B #1.2/B LYS 183
HB2: 3.354Å  

> ui mousemode right translate

> select #1.1: 653-662

145 atoms, 145 bonds, 10 residues, 1 model selected  

> select #1.1: 653-662

145 atoms, 145 bonds, 10 residues, 1 model selected  

> show sel atoms

> style sel ball

Changed 145 atom styles  

> select #1.2: 25-27

52 atoms, 51 bonds, 3 residues, 1 model selected  

> show sel cartoons

> show sel atoms

> style sel ball

Changed 52 atom styles  

> style sel ball

Changed 52 atom styles  

> style sel ball

Changed 52 atom styles  

> style sel ball

Changed 52 atom styles  

> color sel byhetero

> select #1.2: 25-27

52 atoms, 51 bonds, 3 residues, 1 model selected  

> hide sel atoms

> select #1.1: 653-662

145 atoms, 145 bonds, 10 residues, 1 model selected  

> hide sel atoms

> select #1.1: 661

14 atoms, 13 bonds, 1 residue, 1 model selected  

> select #1.1: 611

17 atoms, 16 bonds, 1 residue, 1 model selected  

> style sel ball

Changed 17 atom styles  

> style sel ball

Changed 17 atom styles  

> show sel atoms

> color sel byhetero

[Repeated 1 time(s)]

> select #1.1: 635\

Nothing selected  

> select #1.1: 635

14 atoms, 14 bonds, 1 residue, 1 model selected  

> show sel atoms

> hide sel atoms

> select #1.1: 610

15 atoms, 14 bonds, 1 residue, 1 model selected  

> show sel atoms

> select #1.2:32

14 atoms, 13 bonds, 1 residue, 1 model selected  

> show sel atoms

> color sel byhetero

> style sel ball

Changed 14 atom styles  

> hbonds sel reveal true

2 hydrogen bonds found  

> hbonds sel reveal true

2 hydrogen bonds found  

> hbonds sel reveal true

2 hydrogen bonds found  

> ~hbonds

> open /Users/georgiawilson/Downloads/Conformer3D_COMPOUND_CID_3000226.json

Failed opening file
/Users/georgiawilson/Downloads/Conformer3D_COMPOUND_CID_3000226.json:  
expected str, bytes or os.PathLike object, not NoneType  

> open /Users/georgiawilson/Downloads/Conformer3D_COMPOUND_CID_3000226.json

Failed opening file
/Users/georgiawilson/Downloads/Conformer3D_COMPOUND_CID_3000226.json:  
expected str, bytes or os.PathLike object, not NoneType  

> open /Users/georgiawilson/Downloads/4v5f.cif

Summary of feedback from opening /Users/georgiawilson/Downloads/4v5f.cif  
---  
notes | Fetching CCD 5MU from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/U/5MU/5MU.cif  
Fetching CCD FUA from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/A/FUA/FUA.cif  
Fetching CCD GDP from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/P/GDP/GDP.cif  
Fetching CCD MG from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/G/MG/MG.cif  
  
4v5f.cif title:  
The structure of the ribosome with elongation factor G trapped in the post-
translocational state [more info...]  
  
Chain information for 4v5f.cif #3  
---  
Chain | Description | UniProt  
AA CA | 16S ribosomal RNA |   
AB CB | 30S RIBOSOMAL PROTEIN S2 | RS2_THET8 1-256  
AC CC | 30S RIBOSOMAL PROTEIN S3 | RS3_THET8 1-239  
AD CD | 30S RIBOSOMAL PROTEIN S4 | RS4_THET8 1-209  
AE CE | 30S RIBOSOMAL PROTEIN S5 | RS5_THET8 1-162  
AF CF | 30S RIBOSOMAL PROTEIN S6 | RS6_THET8 1-101  
AG CG | 30S RIBOSOMAL PROTEIN S7 | RS7_THET8 1-156  
AH CH | 30S RIBOSOMAL PROTEIN S8 | RS8_THET8 1-138  
AI CI | 30S RIBOSOMAL PROTEIN S9 | RS9_THET8 1-128  
AJ CJ | 30S RIBOSOMAL PROTEIN S10 | RS10_THET8 1-105  
AK CK | 30S RIBOSOMAL PROTEIN S11 | RS11_THET8 1-129  
AL CL | 30S RIBOSOMAL PROTEIN S12 | RS12_THET8 4-135  
AM CM | 30S RIBOSOMAL PROTEIN S13 | RS13_THET8 1-126  
AN CN | 30S RIBOSOMAL PROTEIN S14 TYPE Z | RS14Z_THET8 1-61  
AO CO | 30S RIBOSOMAL PROTEIN S15 | RS15_THET8 1-89  
AP CP | 30S RIBOSOMAL PROTEIN S16 | RS16_THET8 1-88  
AQ CQ | 30S RIBOSOMAL PROTEIN S17 | RS17_THET8 1-105  
AR CR | 30S RIBOSOMAL PROTEIN S18 | RS18_THET8 1-88  
AS CS | 30S RIBOSOMAL PROTEIN S19 | RS19_THET8 1-93  
AT CT | 30S RIBOSOMAL PROTEIN S20 | RS20_THET8 1-106  
AU CU | 30S RIBOSOMAL PROTEIN THX | RSHX_THET8 1-27  
AV AW CV CW | E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) |   
AX CX | MRNA |   
AY CY | ELONGATION FACTOR G | EFG_THET8 1-691  
B0 D0 | 50S RIBOSOMAL PROTEIN L27 | RL27_THET8 1-85  
B1 D1 | 50S RIBOSOMAL PROTEIN L28 | RL28_THET8 1-98  
B2 D2 | 50S RIBOSOMAL PROTEIN L29 | RL29_THET8 1-72  
B3 D3 | 50S RIBOSOMAL PROTEIN L30 | RL30_THET8 1-60  
B4 D4 | 50S RIBOSOMAL PROTEIN L31 | RL31_THET8 1-71  
B5 D5 | 50S RIBOSOMAL PROTEIN L32 | RL32_THET8 1-60  
B6 D6 | 50S RIBOSOMAL PROTEIN L33 | RL33_THET8 1-54  
B7 D7 | 50S RIBOSOMAL PROTEIN L34 | RL34_THET8 1-49  
B8 D8 | 50S RIBOSOMAL PROTEIN L35 | RL35_THET8 1-65  
B9 D9 | 50S RIBOSOMAL PROTEIN L36 | RL36_THET8 1-37  
BA DA | 23S RIBOSOMAL RNA |   
BB DB | 5S RIBOSOMAL RNA |   
BC DC | 50S RIBOSOMAL PROTEIN L1 | RL1_THET8 1-229  
BD DD | 50S RIBOSOMAL PROTEIN L2 | RL2_THET8 1-276  
BE DE | 50S RIBOSOMAL PROTEIN L3 | RL3_THET8 1-206  
BF DF | 50S RIBOSOMAL PROTEIN L4 | RL4_THET8 1-210  
BG DG | 50S RIBOSOMAL PROTEIN L5 | RL5_THET8 1-182  
BH DH | 50S RIBOSOMAL PROTEIN L6 | RL6_THET8 1-180  
BJ DJ | 50S RIBOSOMAL PROTEIN L10 |   
BK DK | 50S RIBOSOMAL PROTEIN L11 | RL11_THET8 1-147  
BL BM Bl Bm DL DM Dl Dm | 50S RIBOSOMAL PROTEIN L12 |   
BN DN | 50S RIBOSOMAL PROTEIN L13 | RL13_THET8 1-140  
BO DO | 50S RIBOSOMAL PROTEIN L14 | RL14_THET8 1-122  
BP DP | 50S RIBOSOMAL PROTEIN L15 | RL15_THET8 1-150  
BQ DQ | 50S RIBOSOMAL PROTEIN L16 | RL16_THET8 1-141  
BR DR | 50S RIBOSOMAL PROTEIN L17 | RL17_THET8 1-118  
BS DS | 50S RIBOSOMAL PROTEIN L18 | RL18_THET8 1-112  
BT DT | 50S RIBOSOMAL PROTEIN L19 | RL19_THET8 1-146  
BU DU | 50S RIBOSOMAL PROTEIN L20 | RL20_THET8 1-118  
BV DV | 50S RIBOSOMAL PROTEIN L21 | RL21_THET8 1-101  
BW DW | 50S RIBOSOMAL PROTEIN L22 | RL22_THET8 1-113  
BX DX | 50S RIBOSOMAL PROTEIN L23 | RL23_THET8 1-96  
BY DY | 50S RIBOSOMAL PROTEIN L24 | RL24_THET8 1-110  
BZ DZ | 50S RIBOSOMAL PROTEIN L25 | RL25_THET8 1-206  
  
Non-standard residues in 4v5f.cif #3  
---  
FUA — fusidic acid  
GDP — guanosine-5'-diphosphate  
MG — magnesium ion  
ZN — zinc ion  
  
4v5f.cif mmCIF Assemblies  
---  
1| author_defined_assembly  
2| author_defined_assembly  
  

> hide #1.1 models

> hide #!2 models

> hide #2.1 models

> hide #!1.2 models

> show #!1.2 models

> select add #1.2

3579 atoms, 3611 bonds, 2 pseudobonds, 214 residues, 2 models selected  

> select subtract #1.2

Nothing selected  

> hide #!1.2 models

> show #!1.2 models

> select add #3

311552 atoms, 337496 bonds, 9583 pseudobonds, 23540 residues, 4 models
selected  

> select subtract #3

Nothing selected  

> select add #3

311552 atoms, 337496 bonds, 9583 pseudobonds, 23540 residues, 4 models
selected  

> select subtract #3

Nothing selected  

> select add #3

311552 atoms, 337496 bonds, 9583 pseudobonds, 23540 residues, 4 models
selected  

> split

Did not split 2mzw.cif A, has only one piece  
Did not split 2mzw.cif B, has only one piece  
Split 4v5f.cif (#3) into 124 models  
Chain information for 4v5f.cif AA #3.1  
---  
Chain | Description  
AA | No description available  
  
Chain information for 4v5f.cif AB #3.2  
---  
Chain | Description  
AB | No description available  
  
Chain information for 4v5f.cif AC #3.3  
---  
Chain | Description  
AC | No description available  
  
Chain information for 4v5f.cif AD #3.4  
---  
Chain | Description  
AD | No description available  
  
Chain information for 4v5f.cif AE #3.5  
---  
Chain | Description  
AE | No description available  
  
Chain information for 4v5f.cif AF #3.6  
---  
Chain | Description  
AF | No description available  
  
Chain information for 4v5f.cif AG #3.7  
---  
Chain | Description  
AG | No description available  
  
Chain information for 4v5f.cif AH #3.8  
---  
Chain | Description  
AH | No description available  
  
Chain information for 4v5f.cif AI #3.9  
---  
Chain | Description  
AI | No description available  
  
Chain information for 4v5f.cif AJ #3.10  
---  
Chain | Description  
AJ | No description available  
  
Chain information for 4v5f.cif AK #3.11  
---  
Chain | Description  
AK | No description available  
  
Chain information for 4v5f.cif AL #3.12  
---  
Chain | Description  
AL | No description available  
  
Chain information for 4v5f.cif AM #3.13  
---  
Chain | Description  
AM | No description available  
  
Chain information for 4v5f.cif AN #3.14  
---  
Chain | Description  
AN | No description available  
  
Chain information for 4v5f.cif AO #3.15  
---  
Chain | Description  
AO | No description available  
  
Chain information for 4v5f.cif AP #3.16  
---  
Chain | Description  
AP | No description available  
  
Chain information for 4v5f.cif AQ #3.17  
---  
Chain | Description  
AQ | No description available  
  
Chain information for 4v5f.cif AR #3.18  
---  
Chain | Description  
AR | No description available  
  
Chain information for 4v5f.cif AS #3.19  
---  
Chain | Description  
AS | No description available  
  
Chain information for 4v5f.cif AT #3.20  
---  
Chain | Description  
AT | No description available  
  
Chain information for 4v5f.cif AU #3.21  
---  
Chain | Description  
AU | No description available  
  
Chain information for 4v5f.cif AV #3.22  
---  
Chain | Description  
AV | No description available  
  
Chain information for 4v5f.cif AW #3.23  
---  
Chain | Description  
AW | No description available  
  
Chain information for 4v5f.cif AX #3.24  
---  
Chain | Description  
AX | No description available  
  
Chain information for 4v5f.cif AY #3.25  
---  
Chain | Description  
AY | No description available  
  
Chain information for 4v5f.cif B0 #3.26  
---  
Chain | Description  
B0 | No description available  
  
Chain information for 4v5f.cif B1 #3.27  
---  
Chain | Description  
B1 | No description available  
  
Chain information for 4v5f.cif B2 #3.28  
---  
Chain | Description  
B2 | No description available  
  
Chain information for 4v5f.cif B3 #3.29  
---  
Chain | Description  
B3 | No description available  
  
Chain information for 4v5f.cif B4 #3.30  
---  
Chain | Description  
B4 | No description available  
  
Chain information for 4v5f.cif B5 #3.31  
---  
Chain | Description  
B5 | No description available  
  
Chain information for 4v5f.cif B6 #3.32  
---  
Chain | Description  
B6 | No description available  
  
Chain information for 4v5f.cif B7 #3.33  
---  
Chain | Description  
B7 | No description available  
  
Chain information for 4v5f.cif B8 #3.34  
---  
Chain | Description  
B8 | No description available  
  
Chain information for 4v5f.cif B9 #3.35  
---  
Chain | Description  
B9 | No description available  
  
Chain information for 4v5f.cif BA #3.36  
---  
Chain | Description  
BA | No description available  
  
Chain information for 4v5f.cif BB #3.37  
---  
Chain | Description  
BB | No description available  
  
Chain information for 4v5f.cif BC #3.38  
---  
Chain | Description  
BC | No description available  
  
Chain information for 4v5f.cif BD #3.39  
---  
Chain | Description  
BD | No description available  
  
Chain information for 4v5f.cif BE #3.40  
---  
Chain | Description  
BE | No description available  
  
Chain information for 4v5f.cif BF #3.41  
---  
Chain | Description  
BF | No description available  
  
Chain information for 4v5f.cif BG #3.42  
---  
Chain | Description  
BG | No description available  
  
Chain information for 4v5f.cif BH #3.43  
---  
Chain | Description  
BH | No description available  
  
Chain information for 4v5f.cif BJ #3.44  
---  
Chain | Description  
BJ | No description available  
  
Chain information for 4v5f.cif BK #3.45  
---  
Chain | Description  
BK | No description available  
  
Chain information for 4v5f.cif BL #3.46  
---  
Chain | Description  
BL | No description available  
  
Chain information for 4v5f.cif BM #3.47  
---  
Chain | Description  
BM | No description available  
  
Chain information for 4v5f.cif BN #3.48  
---  
Chain | Description  
BN | No description available  
  
Chain information for 4v5f.cif BO #3.49  
---  
Chain | Description  
BO | No description available  
  
Chain information for 4v5f.cif BP #3.50  
---  
Chain | Description  
BP | No description available  
  
Chain information for 4v5f.cif BQ #3.51  
---  
Chain | Description  
BQ | No description available  
  
Chain information for 4v5f.cif BR #3.52  
---  
Chain | Description  
BR | No description available  
  
Chain information for 4v5f.cif BS #3.53  
---  
Chain | Description  
BS | No description available  
  
Chain information for 4v5f.cif BT #3.54  
---  
Chain | Description  
BT | No description available  
  
Chain information for 4v5f.cif BU #3.55  
---  
Chain | Description  
BU | No description available  
  
Chain information for 4v5f.cif BV #3.56  
---  
Chain | Description  
BV | No description available  
  
Chain information for 4v5f.cif BW #3.57  
---  
Chain | Description  
BW | No description available  
  
Chain information for 4v5f.cif BX #3.58  
---  
Chain | Description  
BX | No description available  
  
Chain information for 4v5f.cif BY #3.59  
---  
Chain | Description  
BY | No description available  
  
Chain information for 4v5f.cif BZ #3.60  
---  
Chain | Description  
BZ | No description available  
  
Chain information for 4v5f.cif Bl #3.61  
---  
Chain | Description  
Bl | No description available  
  
Chain information for 4v5f.cif Bm #3.62  
---  
Chain | Description  
Bm | No description available  
  
Chain information for 4v5f.cif CA #3.63  
---  
Chain | Description  
CA | No description available  
  
Chain information for 4v5f.cif CB #3.64  
---  
Chain | Description  
CB | No description available  
  
Chain information for 4v5f.cif CC #3.65  
---  
Chain | Description  
CC | No description available  
  
Chain information for 4v5f.cif CD #3.66  
---  
Chain | Description  
CD | No description available  
  
Chain information for 4v5f.cif CE #3.67  
---  
Chain | Description  
CE | No description available  
  
Chain information for 4v5f.cif CF #3.68  
---  
Chain | Description  
CF | No description available  
  
Chain information for 4v5f.cif CG #3.69  
---  
Chain | Description  
CG | No description available  
  
Chain information for 4v5f.cif CH #3.70  
---  
Chain | Description  
CH | No description available  
  
Chain information for 4v5f.cif CI #3.71  
---  
Chain | Description  
CI | No description available  
  
Chain information for 4v5f.cif CJ #3.72  
---  
Chain | Description  
CJ | No description available  
  
Chain information for 4v5f.cif CK #3.73  
---  
Chain | Description  
CK | No description available  
  
Chain information for 4v5f.cif CL #3.74  
---  
Chain | Description  
CL | No description available  
  
Chain information for 4v5f.cif CM #3.75  
---  
Chain | Description  
CM | No description available  
  
Chain information for 4v5f.cif CN #3.76  
---  
Chain | Description  
CN | No description available  
  
Chain information for 4v5f.cif CO #3.77  
---  
Chain | Description  
CO | No description available  
  
Chain information for 4v5f.cif CP #3.78  
---  
Chain | Description  
CP | No description available  
  
Chain information for 4v5f.cif CQ #3.79  
---  
Chain | Description  
CQ | No description available  
  
Chain information for 4v5f.cif CR #3.80  
---  
Chain | Description  
CR | No description available  
  
Chain information for 4v5f.cif CS #3.81  
---  
Chain | Description  
CS | No description available  
  
Chain information for 4v5f.cif CT #3.82  
---  
Chain | Description  
CT | No description available  
  
Chain information for 4v5f.cif CU #3.83  
---  
Chain | Description  
CU | No description available  
  
Chain information for 4v5f.cif CV #3.84  
---  
Chain | Description  
CV | No description available  
  
Chain information for 4v5f.cif CW #3.85  
---  
Chain | Description  
CW | No description available  
  
Chain information for 4v5f.cif CX #3.86  
---  
Chain | Description  
CX | No description available  
  
Chain information for 4v5f.cif CY #3.87  
---  
Chain | Description  
CY | No description available  
  
Chain information for 4v5f.cif D0 #3.88  
---  
Chain | Description  
D0 | No description available  
  
Chain information for 4v5f.cif D1 #3.89  
---  
Chain | Description  
D1 | No description available  
  
Chain information for 4v5f.cif D2 #3.90  
---  
Chain | Description  
D2 | No description available  
  
Chain information for 4v5f.cif D3 #3.91  
---  
Chain | Description  
D3 | No description available  
  
Chain information for 4v5f.cif D4 #3.92  
---  
Chain | Description  
D4 | No description available  
  
Chain information for 4v5f.cif D5 #3.93  
---  
Chain | Description  
D5 | No description available  
  
Chain information for 4v5f.cif D6 #3.94  
---  
Chain | Description  
D6 | No description available  
  
Chain information for 4v5f.cif D7 #3.95  
---  
Chain | Description  
D7 | No description available  
  
Chain information for 4v5f.cif D8 #3.96  
---  
Chain | Description  
D8 | No description available  
  
Chain information for 4v5f.cif D9 #3.97  
---  
Chain | Description  
D9 | No description available  
  
Chain information for 4v5f.cif DA #3.98  
---  
Chain | Description  
DA | No description available  
  
Chain information for 4v5f.cif DB #3.99  
---  
Chain | Description  
DB | No description available  
  
Chain information for 4v5f.cif DC #3.100  
---  
Chain | Description  
DC | No description available  
  
Chain information for 4v5f.cif DD #3.101  
---  
Chain | Description  
DD | No description available  
  
Chain information for 4v5f.cif DE #3.102  
---  
Chain | Description  
DE | No description available  
  
Chain information for 4v5f.cif DF #3.103  
---  
Chain | Description  
DF | No description available  
  
Chain information for 4v5f.cif DG #3.104  
---  
Chain | Description  
DG | No description available  
  
Chain information for 4v5f.cif DH #3.105  
---  
Chain | Description  
DH | No description available  
  
Chain information for 4v5f.cif DJ #3.106  
---  
Chain | Description  
DJ | No description available  
  
Chain information for 4v5f.cif DK #3.107  
---  
Chain | Description  
DK | No description available  
  
Chain information for 4v5f.cif DL #3.108  
---  
Chain | Description  
DL | No description available  
  
Chain information for 4v5f.cif DM #3.109  
---  
Chain | Description  
DM | No description available  
  
Chain information for 4v5f.cif DN #3.110  
---  
Chain | Description  
DN | No description available  
  
Chain information for 4v5f.cif DO #3.111  
---  
Chain | Description  
DO | No description available  
  
Chain information for 4v5f.cif DP #3.112  
---  
Chain | Description  
DP | No description available  
  
Chain information for 4v5f.cif DQ #3.113  
---  
Chain | Description  
DQ | No description available  
  
Chain information for 4v5f.cif DR #3.114  
---  
Chain | Description  
DR | No description available  
  
Chain information for 4v5f.cif DS #3.115  
---  
Chain | Description  
DS | No description available  
  
Chain information for 4v5f.cif DT #3.116  
---  
Chain | Description  
DT | No description available  
  
Chain information for 4v5f.cif DU #3.117  
---  
Chain | Description  
DU | No description available  
  
Chain information for 4v5f.cif DV #3.118  
---  
Chain | Description  
DV | No description available  
  
Chain information for 4v5f.cif DW #3.119  
---  
Chain | Description  
DW | No description available  
  
Chain information for 4v5f.cif DX #3.120  
---  
Chain | Description  
DX | No description available  
  
Chain information for 4v5f.cif DY #3.121  
---  
Chain | Description  
DY | No description available  
  
Chain information for 4v5f.cif DZ #3.122  
---  
Chain | Description  
DZ | No description available  
  
Chain information for 4v5f.cif Dl #3.123  
---  
Chain | Description  
Dl | No description available  
  
Chain information for 4v5f.cif Dm #3.124  
---  
Chain | Description  
Dm | No description available  
  

> split

Did not split 2mzw.cif A, has only one piece  
Did not split 2mzw.cif B, has only one piece  
Did not split 4v5f.cif AA, has only one piece  
Did not split 4v5f.cif AB, has only one piece  
Did not split 4v5f.cif AC, has only one piece  
Did not split 4v5f.cif AD, has only one piece  
Did not split 4v5f.cif AE, has only one piece  
Did not split 4v5f.cif AF, has only one piece  
Did not split 4v5f.cif AG, has only one piece  
Did not split 4v5f.cif AH, has only one piece  
Did not split 4v5f.cif AI, has only one piece  
Did not split 4v5f.cif AJ, has only one piece  
Did not split 4v5f.cif AK, has only one piece  
Did not split 4v5f.cif AL, has only one piece  
Did not split 4v5f.cif AM, has only one piece  
Did not split 4v5f.cif AN, has only one piece  
Did not split 4v5f.cif AO, has only one piece  
Did not split 4v5f.cif AP, has only one piece  
Did not split 4v5f.cif AQ, has only one piece  
Did not split 4v5f.cif AR, has only one piece  
Did not split 4v5f.cif AS, has only one piece  
Did not split 4v5f.cif AT, has only one piece  
Did not split 4v5f.cif AU, has only one piece  
Did not split 4v5f.cif AV, has only one piece  
Did not split 4v5f.cif AW, has only one piece  
Did not split 4v5f.cif AX, has only one piece  
Did not split 4v5f.cif AY, has only one piece  
Did not split 4v5f.cif B0, has only one piece  
Did not split 4v5f.cif B1, has only one piece  
Did not split 4v5f.cif B2, has only one piece  
Did not split 4v5f.cif B3, has only one piece  
Did not split 4v5f.cif B4, has only one piece  
Did not split 4v5f.cif B5, has only one piece  
Did not split 4v5f.cif B6, has only one piece  
Did not split 4v5f.cif B7, has only one piece  
Did not split 4v5f.cif B8, has only one piece  
Did not split 4v5f.cif B9, has only one piece  
Did not split 4v5f.cif BA, has only one piece  
Did not split 4v5f.cif BB, has only one piece  
Did not split 4v5f.cif BC, has only one piece  
Did not split 4v5f.cif BD, has only one piece  
Did not split 4v5f.cif BE, has only one piece  
Did not split 4v5f.cif BF, has only one piece  
Did not split 4v5f.cif BG, has only one piece  
Did not split 4v5f.cif BH, has only one piece  
Did not split 4v5f.cif BJ, has only one piece  
Did not split 4v5f.cif BK, has only one piece  
Did not split 4v5f.cif BL, has only one piece  
Did not split 4v5f.cif BM, has only one piece  
Did not split 4v5f.cif BN, has only one piece  
Did not split 4v5f.cif BO, has only one piece  
Did not split 4v5f.cif BP, has only one piece  
Did not split 4v5f.cif BQ, has only one piece  
Did not split 4v5f.cif BR, has only one piece  
Did not split 4v5f.cif BS, has only one piece  
Did not split 4v5f.cif BT, has only one piece  
Did not split 4v5f.cif BU, has only one piece  
Did not split 4v5f.cif BV, has only one piece  
Did not split 4v5f.cif BW, has only one piece  
Did not split 4v5f.cif BX, has only one piece  
Did not split 4v5f.cif BY, has only one piece  
Did not split 4v5f.cif BZ, has only one piece  
Did not split 4v5f.cif Bl, has only one piece  
Did not split 4v5f.cif Bm, has only one piece  
Did not split 4v5f.cif CA, has only one piece  
Did not split 4v5f.cif CB, has only one piece  
Did not split 4v5f.cif CC, has only one piece  
Did not split 4v5f.cif CD, has only one piece  
Did not split 4v5f.cif CE, has only one piece  
Did not split 4v5f.cif CF, has only one piece  
Did not split 4v5f.cif CG, has only one piece  
Did not split 4v5f.cif CH, has only one piece  
Did not split 4v5f.cif CI, has only one piece  
Did not split 4v5f.cif CJ, has only one piece  
Did not split 4v5f.cif CK, has only one piece  
Did not split 4v5f.cif CL, has only one piece  
Did not split 4v5f.cif CM, has only one piece  
Did not split 4v5f.cif CN, has only one piece  
Did not split 4v5f.cif CO, has only one piece  
Did not split 4v5f.cif CP, has only one piece  
Did not split 4v5f.cif CQ, has only one piece  
Did not split 4v5f.cif CR, has only one piece  
Did not split 4v5f.cif CS, has only one piece  
Did not split 4v5f.cif CT, has only one piece  
Did not split 4v5f.cif CU, has only one piece  
Did not split 4v5f.cif CV, has only one piece  
Did not split 4v5f.cif CW, has only one piece  
Did not split 4v5f.cif CX, has only one piece  
Did not split 4v5f.cif CY, has only one piece  
Did not split 4v5f.cif D0, has only one piece  
Did not split 4v5f.cif D1, has only one piece  
Did not split 4v5f.cif D2, has only one piece  
Did not split 4v5f.cif D3, has only one piece  
Did not split 4v5f.cif D4, has only one piece  
Did not split 4v5f.cif D5, has only one piece  
Did not split 4v5f.cif D6, has only one piece  
Did not split 4v5f.cif D7, has only one piece  
Did not split 4v5f.cif D8, has only one piece  
Did not split 4v5f.cif D9, has only one piece  
Did not split 4v5f.cif DA, has only one piece  
Did not split 4v5f.cif DB, has only one piece  
Did not split 4v5f.cif DC, has only one piece  
Did not split 4v5f.cif DD, has only one piece  
Did not split 4v5f.cif DE, has only one piece  
Did not split 4v5f.cif DF, has only one piece  
Did not split 4v5f.cif DG, has only one piece  
Did not split 4v5f.cif DH, has only one piece  
Did not split 4v5f.cif DJ, has only one piece  
Did not split 4v5f.cif DK, has only one piece  
Did not split 4v5f.cif DL, has only one piece  
Did not split 4v5f.cif DM, has only one piece  
Did not split 4v5f.cif DN, has only one piece  
Did not split 4v5f.cif DO, has only one piece  
Did not split 4v5f.cif DP, has only one piece  
Did not split 4v5f.cif DQ, has only one piece  
Did not split 4v5f.cif DR, has only one piece  
Did not split 4v5f.cif DS, has only one piece  
Did not split 4v5f.cif DT, has only one piece  
Did not split 4v5f.cif DU, has only one piece  
Did not split 4v5f.cif DV, has only one piece  
Did not split 4v5f.cif DW, has only one piece  
Did not split 4v5f.cif DX, has only one piece  
Did not split 4v5f.cif DY, has only one piece  
Did not split 4v5f.cif DZ, has only one piece  
Did not split 4v5f.cif Dl, has only one piece  
Did not split 4v5f.cif Dm, has only one piece  

> hide #!3 models

> show #!3 models

> hide #!3.1 models

> hide #3.2 models

> hide #3.3 models

> hide #!3.4 models

> hide #3.5 models

> hide #3.7 models

> hide #3.6 models

> hide #3.8 models

> hide #3.9 models

> hide #3.10 models

> hide #3.11 models

> hide #3.12 models

> hide #3.13 models

> hide #!3.14 models

> hide #3.15 models

> hide #3.16 models

> hide #3.17 models

> hide #3.18 models

> hide #3.19 models

> hide #3.20 models

> hide #3.21 models

> hide #!3.22 models

> hide #!3.23 models

> show #!3.23 models

> hide #3.24 models

> hide #!3.23 models

> hide #3.26 models

> hide #!3.25 models

> hide #3.27 models

> hide #3.28 models

> show #3.28 models

> hide #3.28 models

> hide #3.29 models

> hide #3.30 models

> hide #3.32 models

> hide #3.31 models

> hide #3.33 models

> hide #3.34 models

> hide #!3 models

> show #!3 models

> hide #3.35 models

> hide #!3.36 models

> hide #!3.37 models

> hide #3.39 models

> hide #3.38 models

> hide #3.41 models

> hide #3.40 models

> hide #3.42 models

> hide #3.43 models

> hide #3.44 models

> hide #3.45 models

> show #3.45 models

> hide #3.46 models

> hide #3.45 models

> hide #3.47 models

> hide #3.48 models

> hide #3.49 models

> hide #3.51 models

> hide #3.50 models

> hide #3.52 models

> hide #3.53 models

> hide #3.54 models

> hide #3.55 models

> hide #3.56 models

> hide #3.57 models

> hide #3.58 models

> hide #3.59 models

> hide #3.64 models

> hide #3.60 models

> hide #3.61 models

> hide #3.62 models

> hide #!3.63 models

> hide #3.65 models

> hide #!3.66 models

> hide #3.67 models

> hide #3.68 models

> hide #3.69 models

> hide #3.70 models

> show #3.70 models

> hide #3.70 models

> hide #3.71 models

> hide #3.72 models

> show #3.72 models

> hide #3.74 models

> hide #3.73 models

> hide #3.72 models

> hide #3.118 models

> hide #3.116 models

> hide #3.117 models

> show #3.116 models

> hide #3.115 models

> hide #3.116 models

> show #3.115 models

> hide #3.113 models

> hide #3.114 models

> hide #3.115 models

> hide #3.112 models

> hide #3.111 models

> hide #3.110 models

> hide #3.109 models

> hide #3.108 models

> hide #3.107 models

> hide #3.106 models

> hide #3.105 models

> hide #3.104 models

> hide #3.103 models

> show #3.103 models

> hide #3.102 models

> hide #3.103 models

> hide #!3.98 models

> hide #3.101 models

> hide #3.100 models

> show #3.100 models

> hide #!3.99 models

> hide #3.100 models

> hide #3.97 models

> hide #3.96 models

> hide #3.95 models

> hide #3.94 models

> hide #3.92 models

> hide #3.90 models

> hide #3.91 models

> hide #3.93 models

> hide #3.89 models

> hide #3.88 models

> hide #!3.87 models

> select add #3

311552 atoms, 337496 bonds, 9533 pseudobonds, 23540 residues, 143 models
selected  

> show sel & #3.75,77-83,86,119-124#!3.76,84-85 cartoons

[Repeated 1 time(s)]

> hide sel & #3.75,77-83,86,119-124#!3.76,84-85 surfaces

[Repeated 5 time(s)]

> show sel & #3.75,77-83,86,119-124#!3.76,84-85 cartoons

[Repeated 1 time(s)]

> hide sel & #3.75,77-83,86,119-124#!3.76,84-85 surfaces

> hide sel & #3.75,77-83,86,119-124#!3.76,84-85 atoms

> hide #!3 models

> show #!3 models

> select subtract #3

Nothing selected  

> select add #3

311552 atoms, 337496 bonds, 9533 pseudobonds, 23540 residues, 143 models
selected  

> hide #3.119 models

> show sel & #3.75,77-83,86,120-124#!3.76,84-85 atoms

> style sel & #3.75,77-83,86,120-124#!3.76,84-85 ball

Changed 12728 atom styles  

> hide #3.120 models

> hide #3.121 models

> hide #3.122 models

> hide #3.123 models

> hide #3.124 models

> show #3.122 models

> hide #3.122 models

> hide #3.86 models

> hide #!3.85 models

> hide #!3.84 models

> hide #3.83 models

> hide #3.82 models

> hide #3.81 models

> hide #3.79 models

> hide #3.80 models

> show #3.79 models

> hide #3.78 models

> hide #3.79 models

> hide #!3.76 models

> hide #3.75 models

> hide #3.77 models

> hide #!1.2 atoms

> select subtract #3

Nothing selected  

> select add #3

311552 atoms, 337496 bonds, 9533 pseudobonds, 23540 residues, 143 models
selected  

> select subtract #3

Nothing selected  

> ui tool show Matchmaker

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.10-rc2025.06.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 423, in _save  
for opt in self._get_actionable_options():  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10-rc2025.06.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 385, in
_get_actionable_options  
options = self.options_panel.options(self.options_panel.current_category())  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10-rc2025.06.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 251, in current_category  
return self._tabs_widget.tabText(self.currentIndex())  
^^^^^^^^^^^^^^^^^  
AttributeError: 'CategorizedOptionsPanel' object has no attribute
'currentIndex'  
  
AttributeError: 'CategorizedOptionsPanel' object has no attribute
'currentIndex'  
  
File
"/Applications/ChimeraX-1.10-rc2025.06.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 251, in current_category  
return self._tabs_widget.tabText(self.currentIndex())  
^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> select add #3

311552 atoms, 337496 bonds, 9533 pseudobonds, 23540 residues, 143 models
selected  

> select subtract #3

Nothing selected  

> show #3.27 models

> hide #3.27#!1.2 surfaces

[Repeated 1 time(s)]

> select add #3

311552 atoms, 337496 bonds, 9533 pseudobonds, 23540 residues, 143 models
selected  

> select subtract #3

Nothing selected  

> select add #3

311552 atoms, 337496 bonds, 9533 pseudobonds, 23540 residues, 143 models
selected  

> hide sel & #3.27 surfaces

[Repeated 1 time(s)]

> show sel & #3.27 cartoons

> hide sel & #3.27 surfaces

> style sel & #3.27 ball

Changed 732 atom styles  

> hide sel & #3.27 atoms

> hide #3.27 models

> show #3.26 models

> hide sel & #3.26 atoms

> show sel & #3.26 cartoons

> hide #3.26 models

> show #3.27 models

> hide #3.27 models

> show #3.28 models

> hide sel & #3.28 cartoons

> show sel & #3.28 atoms

> hide sel & #3.28 cartoons

> show sel & #3.28 cartoons

> hide sel & #3.28 atoms

> hide #3.28 models

> show #3.29 models

> hide sel & #3.29 atoms

> show sel & #3.29 cartoons

[Repeated 1 time(s)]

> hide sel & #3.29 cartoons

> show #3.28 models

> hide #3.28 models

> hide #3.29 models

> show #3.29 models

> show sel & #3.29 cartoons

> hide sel & #3.29 cartoons

> show #3.30 models

> hide #3.29 models

> hide #3.30 models

> show #3.31 models

> hide sel & #3.31 atoms

> show sel & #3.31 cartoons

> hide sel & #3.31 cartoons

> hide #3.31 models

> show #3.31 models

> show #!3.25 models

> hide sel & #3.31#!3.25 cartoons

> show sel & #3.31#!3.25 atoms

> hide sel & #3.31#!3.25 atoms

> hide sel & #3.31#!3.25 cartoons

> show sel & #3.31#!3.25 cartoons

> hide #!3.25 models

> hide #3.31 models

> show #3.28 models

> hide #3.28 models

> show #3.29 models

> show sel & #3.29 atoms

> hide sel & #3.29 atoms

> show sel & #3.29 cartoons

[Repeated 1 time(s)]

> hide #3.29 models

> show #3.89 models

> hide sel & #3.89 atoms

> show sel & #3.89 cartoons

> hide sel & #3.89 cartoons

> hide #3.89 models

> show #3.90 models

> hide #3.90 models

> show #3.92 models

> hide #3.92 models

> show #3.93 models

> hide #3.93 models

> show #3.94 models

> hide #3.94 models

> show #3.94 models

> hide #3.94 models

> show #3.95 models

> hide #3.95 models

> show #3.96 models

> show #3.97 models

> hide #3.96 models

> hide #3.97 models

> show #!3.98 models

> hide #!3.98 models

> show #!3.99 models

> hide #!3.99 models

> show #3.100 models

> hide sel & #3.100 atoms

> show sel & #3.100 cartoons

> ui tool show Matchmaker

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.10-rc2025.06.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 423, in _save  
for opt in self._get_actionable_options():  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10-rc2025.06.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 385, in
_get_actionable_options  
options = self.options_panel.options(self.options_panel.current_category())  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10-rc2025.06.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 251, in current_category  
return self._tabs_widget.tabText(self.currentIndex())  
^^^^^^^^^^^^^^^^^  
AttributeError: 'CategorizedOptionsPanel' object has no attribute
'currentIndex'  
  
AttributeError: 'CategorizedOptionsPanel' object has no attribute
'currentIndex'  
  
File
"/Applications/ChimeraX-1.10-rc2025.06.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 251, in current_category  
return self._tabs_widget.tabText(self.currentIndex())  
^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> ui tool show Matchmaker

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.10-rc2025.06.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 423, in _save  
for opt in self._get_actionable_options():  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10-rc2025.06.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 385, in
_get_actionable_options  
options = self.options_panel.options(self.options_panel.current_category())  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10-rc2025.06.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 251, in current_category  
return self._tabs_widget.tabText(self.currentIndex())  
^^^^^^^^^^^^^^^^^  
AttributeError: 'CategorizedOptionsPanel' object has no attribute
'currentIndex'  
  
AttributeError: 'CategorizedOptionsPanel' object has no attribute
'currentIndex'  
  
File
"/Applications/ChimeraX-1.10-rc2025.06.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 251, in current_category  
return self._tabs_widget.tabText(self.currentIndex())  
^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> ui tool show Matchmaker

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.10-rc2025.06.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 423, in _save  
for opt in self._get_actionable_options():  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10-rc2025.06.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 385, in
_get_actionable_options  
options = self.options_panel.options(self.options_panel.current_category())  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10-rc2025.06.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 251, in current_category  
return self._tabs_widget.tabText(self.currentIndex())  
^^^^^^^^^^^^^^^^^  
AttributeError: 'CategorizedOptionsPanel' object has no attribute
'currentIndex'  
  
AttributeError: 'CategorizedOptionsPanel' object has no attribute
'currentIndex'  
  
File
"/Applications/ChimeraX-1.10-rc2025.06.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 251, in current_category  
return self._tabs_widget.tabText(self.currentIndex())  
^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 Metal - 89.4
OpenGL renderer: Apple M3
OpenGL vendor: Apple

Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Air
      Model Identifier: Mac15,12
      Model Number: MXCR3B/A
      Chip: Apple M3
      Total Number of Cores: 8 (4 performance and 4 efficiency)
      Memory: 16 GB
      System Firmware Version: 11881.121.1
      OS Loader Version: 11881.121.1

Software:

    System Software Overview:

      System Version: macOS 15.5 (24F74)
      Kernel Version: Darwin 24.5.0
      Time since boot: 21 days, 11 hours, 4 minutes

Graphics/Displays:

    Apple M3:

      Chipset Model: Apple M3
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 10
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina Display
          Resolution: 2560 x 1664 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 3.0.0
    auditwheel: 6.4.0
    babel: 2.17.0
    beautifulsoup4: 4.13.3
    blockdiag: 3.0.0
    blosc2: 3.3.4
    build: 1.2.2.post1
    certifi: 2023.11.17
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.2
    ChimeraX-AddCharge: 1.5.19
    ChimeraX-AddH: 2.2.7
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.20.2
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Aniso: 1.1.4
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.60.7
    ChimeraX-AtomicLibrary: 14.1.18
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.5.1
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.10rc202506100450
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.1
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.6.2
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.1
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.10.1
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.19
    ChimeraX-ModelPanel: 1.5.1
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14.1
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.10
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.3
    ChimeraX-ProfileGrids: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.3
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.7
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.1
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.45.1
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.3.2
    coverage: 7.8.2
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.12
    debugpy: 1.8.14
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.0
    filelock: 3.18.0
    fonttools: 4.58.2
    funcparserlib: 2.0.0a0
    glfw: 2.9.0
    grako: 3.16.5
    h5py: 3.14.0
    html2text: 2024.2.26
    idna: 3.10
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.1.0
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.7
    jedi: 0.19.1
    Jinja2: 3.1.6
    jupyter_client: 8.6.3
    jupyter_core: 5.8.1
    jupyterlab_widgets: 3.0.15
    kiwisolver: 1.4.8
    line_profiler: 4.2.0
    lxml: 5.3.1
    lz4: 4.4.4
    MarkupSafe: 3.0.2
    matplotlib: 3.10.1
    matplotlib-inline: 0.1.7
    msgpack: 1.1.0
    ndindex: 1.10.0
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.11.0
    numpy: 1.26.4
    OpenMM: 8.2.0
    openvr: 1.26.701
    packaging: 24.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pickleshare: 0.7.5
    pillow: 10.4.0
    pip: 25.0.1
    pkginfo: 1.11.1
    platformdirs: 4.3.8
    pluggy: 1.6.0
    prompt_toolkit: 3.0.51
    psutil: 7.0.0
    ptyprocess: 0.7.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.32
    Pygments: 2.18.0
    pynmrstar: 3.3.5
    pynrrd: 1.0.0
    PyOpenGL: 3.1.9
    PyOpenGL-accelerate: 3.1.9
    pyopenxr: 1.1.4501
    pyparsing: 3.2.3
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.8.1
    PyQt6-Qt6: 6.8.2
    PyQt6-WebEngine-commercial: 6.8.0
    PyQt6-WebEngine-Qt6: 6.8.2
    PyQt6_sip: 13.10.0
    pytest: 8.4.0
    pytest-cov: 6.1.1
    python-dateutil: 2.9.0.post0
    pytz: 2025.2
    pyzmq: 26.4.0
    qtconsole: 5.5.2
    QtPy: 2.4.3
    qtshim: 1.1
    RandomWords: 0.4.0
    requests: 2.32.3
    roman-numerals-py: 3.1.0
    scipy: 1.14.0
    setuptools: 78.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 3.0.1
    sortedcontainers: 2.4.0
    soupsieve: 2.7
    Sphinx: 8.2.3
    sphinx-autodoc-typehints: 3.1.0
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.7.1
    tables: 3.10.2
    tcia_utils: 1.5.1
    tifffile: 2025.3.13
    tinyarray: 1.2.4
    tornado: 6.5.1
    traitlets: 5.14.3
    typing_extensions: 4.14.0
    tzdata: 2025.2
    urllib3: 2.4.0
    wcwidth: 0.2.13
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.14

[Eric Pettersen]

Fix: ​https://github.com/RBVI/ChimeraX/commit/cd4a5656a9535c105b080590220fc271c9bed355