id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 16301 Session save: SphereModel not in MapEraser's get_class() chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.22631 ChimeraX Version: 1.9rc202411041924 (2024-11-04 19:24:57 UTC) Description Replace this text with list of actions that caused this problem to occur Log: UCSF ChimeraX version: 1.9rc202411041924 (2024-11-04) © 2016-2024 Regents of the University of California. All rights reserved. > open ""D:/GHSR/A&M/结构/ligand1 Anamorelin/ligand1.cxs"" Opened cryosparc_P309_J105_003_volume_map_sharp.mrc as #1, grid size 256,256,256, pixel 0.73, shown at level 0.265, step 1, values float32 Log from Wed Nov 13 15:54:35 2024 Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9rc202411041924 (2024-11-04) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""D:/GHSR/A&M/结构/ligand1 > Anamorelin/cryosparc_P309_J105_003_volume_map_sharp.mrc"" Opened cryosparc_P309_J105_003_volume_map_sharp.mrc as #1, grid size 256,256,256, pixel 0.73, shown at level 0.201, step 1, values float32 > open ""D:/GHSR/A&M/结构/ligand1 Anamorelin/GSHR-Ananmorelin-J105-coot-7.pdb"" Chain information for GSHR-Ananmorelin-J105-coot-7.pdb #2 --- Chain | Description A | No description available B | No description available G | No description available N | No description available R | No description available > set bgColor black > set bgColor white > hide #!1 models > show #!1 models > hide #!1 models > volume #1 level 0.3676 > volume #1 level 0.312 > hide #!1 models > hide surfaces > select add #2 16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 2 models selected > hide sel surfaces [Repeated 1 time(s)] > hide sel cartoons > hide sel surfaces > hide sel cartoons > hide sel atoms > show sel atoms > hide sel cartoons > show sel cartoons [Repeated 1 time(s)] > hide sel cartoons > hide sel surfaces > show #!1 models > hide #!1 models > hide sel surfaces > show sel surfaces > hide sel surfaces [Repeated 2 time(s)] > show sel surfaces > hide sel surfaces > hide sel cartoons > hide sel atoms > show sel cartoons > select /R:37-334 4607 atoms, 4670 bonds, 1 pseudobond, 283 residues, 2 models selected > select /R:37-334 4607 atoms, 4670 bonds, 1 pseudobond, 283 residues, 2 models selected > color (#!2 & sel) #4f3c89ff > color (#!2 & sel) #ccaed2ff > color (#!2 & sel) #7a4069ff > select /G:6-62 887 atoms, 893 bonds, 57 residues, 1 model selected > select /G:6-62 887 atoms, 893 bonds, 57 residues, 1 model selected > select /G:6-62 887 atoms, 893 bonds, 57 residues, 1 model selected > select /G:6-62 887 atoms, 893 bonds, 57 residues, 1 model selected > select /N:1-128 1915 atoms, 1935 bonds, 128 residues, 1 model selected > select /N:1-128 1915 atoms, 1935 bonds, 128 residues, 1 model selected > select /R:37-334 4607 atoms, 4670 bonds, 1 pseudobond, 283 residues, 2 models selected > select /N:1-128 1915 atoms, 1935 bonds, 128 residues, 1 model selected > show #!1 models > volume #1 level 0.2327 > surface dust #1 size 7.3 > select ::name=""LIG"" 40 atoms, 43 bonds, 1 residue, 1 model selected > hide #!1 models > select ::name=""LIG"" 40 atoms, 43 bonds, 1 residue, 1 model selected > show sel atoms > select ::name=""CLR"" 148 atoms, 154 bonds, 2 residues, 1 model selected > show sel atoms > select /B:3-340 5108 atoms, 5155 bonds, 338 residues, 1 model selected > color (#!2 & sel) #77aa44ff > color (#!2 & sel) #996666ff > color (#!2 & sel) #966d8aff > color (#!2 & sel) #4f3c89ff > color (#!2 & sel) #44ff33ff > color (#!2 & sel) #966d8aff > color (#!2 & sel) #ffffffff > color (#!2 & sel) #4f3c89ff > color (#!2 & sel) #44ff33ff > color (#!2 & sel) #966d8aff > select /R:37-334 4607 atoms, 4670 bonds, 1 pseudobond, 283 residues, 2 models selected > select /N:1-128 1915 atoms, 1935 bonds, 128 residues, 1 model selected > select /G:6-62 887 atoms, 893 bonds, 57 residues, 1 model selected > color (#!2 & sel) #ccaed2ff > color (#!2 & sel) #ccccaaff > color (#!2 & sel) #9999ccff > color (#!2 & sel) #99c0c2ff > color (#!2 & sel) #9999ccff > color (#!2 & sel) #66bb99ff > color (#!2 & sel) #6b9794ff > select /G:6-62 887 atoms, 893 bonds, 57 residues, 1 model selected > select /G:6-62 887 atoms, 893 bonds, 57 residues, 1 model selected > select /B:3-340 5108 atoms, 5155 bonds, 338 residues, 1 model selected > select /R:37-334 4607 atoms, 4670 bonds, 1 pseudobond, 283 residues, 2 models selected > select /N:1-128 1915 atoms, 1935 bonds, 128 residues, 1 model selected > color (#!2 & sel) #7a4069ff > color (#!2 & sel) #77aa44ff > color (#!2 & sel) #ddeeccff > color (#!2 & sel) #deceacff > color (#!2 & sel) #6b9794ff > color (#!2 & sel) #66bb99ff > color (#!2 & sel) #7788ccff > color (#!2 & sel) #78c2c4ff > select add #2 16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 3 models selected > select subtract #2 5 models selected > select /R:37-334 4607 atoms, 4670 bonds, 1 pseudobond, 283 residues, 2 models selected > select /G:6-62 887 atoms, 893 bonds, 57 residues, 1 model selected > ui tool show ""Color Actions"" > color sel medium slate blue > color sel medium purple > color sel slate blue [Repeated 1 time(s)] > color sel rebecca purple > color sel slate blue > color sel medium purple > color sel slate blue > select /G:6-62 887 atoms, 893 bonds, 57 residues, 1 model selected > select /N:1-128 1915 atoms, 1935 bonds, 128 residues, 1 model selected > select /A:15-394 3756 atoms, 3788 bonds, 2 pseudobonds, 228 residues, 2 models selected > ui tool show ""Color Actions"" > color sel salmon > color sel chocolate > color (#!2 & sel) #50a9b5ff > color (#!2 & sel) #5500aaff > color (#!2 & sel) #ee55aaff > color (#!2 & sel) #e5a69aff > select /B:3-340 5108 atoms, 5155 bonds, 338 residues, 1 model selected > color (#!2 & sel) #93212dff > color (#!2 & sel) #993322ff > color (#!2 & sel) #339977ff > color (#!2 & sel) #397979ff > select /G:6-62 887 atoms, 893 bonds, 57 residues, 1 model selected > select /G:6-62 887 atoms, 893 bonds, 57 residues, 1 model selected > select /G:6-62 887 atoms, 893 bonds, 57 residues, 1 model selected > color (#!2 & sel) #7a4069ff > color (#!2 & sel) #77aa44ff > color (#!2 & sel) #bbffffff > color (#!2 & sel) #bff7ffff > color (#!2 & sel) #bff7f6ff > select /G:6-62 887 atoms, 893 bonds, 57 residues, 1 model selected > select /N:1-128 1915 atoms, 1935 bonds, 128 residues, 1 model selected > color (#!2 & sel) #78c2c4ff > color (#!2 & sel) #7788ccff > color (#!2 & sel) #aaaa88ff > color (#!2 & sel) #aa83afff > show sel surfaces [Repeated 1 time(s)] > select add #2 16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 3 models selected > select subtract #2 5 models selected > select add #2 16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 2 models selected > show sel surfaces > hide sel surfaces > select /G:6-62 887 atoms, 893 bonds, 57 residues, 1 model selected > color (#!2 & sel) #bff7f6ff > color (#!2 & sel) #bbffffff > color (#!2 & sel) #9933bbff > color (#!2 & sel) #93bca4ff > color (#!2 & sel) #9933bbff > color (#!2 & sel) #aaffffff > color (#!2 & sel) #aaffeeff > color (#!2 & sel) #afe0e5ff > select add #2 16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 3 models selected > select subtract #2 5 models selected > show surfaces [Repeated 1 time(s)] > hide surfaces > select /G:6-62 887 atoms, 893 bonds, 57 residues, 1 model selected > select /G:6-62 887 atoms, 893 bonds, 57 residues, 1 model selected > select /N:1-128 1915 atoms, 1935 bonds, 128 residues, 1 model selected > select /R:37-334 4607 atoms, 4670 bonds, 1 pseudobond, 283 residues, 2 models selected > color (#!2 & sel) #966d8aff > color (#!2 & sel) #996666ff > color (#!2 & sel) #55dd55ff > color (#!2 & sel) #5d5182ff > color (#!2 & sel) #55dd55ff > color (#!2 & sel) #5d5182ff > color (#!2 & sel) #55dd55ff > color (#!2 & sel) #110011ff > color (#!2 & sel) #010011ff > color (#!2 & sel) #0a0011ff > color (#!2 & sel) #650011ff > color (#!2 & sel) #650911ff > color (#!2 & sel) #655a11ff > color (#!2 & sel) #655a01ff > color (#!2 & sel) #655a0fff > color (#!2 & sel) #655a9eff > select add #2 16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 3 models selected > select subtract #2 5 models selected > color zone #1 near dist 3.5 Invalid ""near"" argument: invalid atoms specifier > color zone #1 near all distance 3.5 > show #!1 models > color zone #1 near all distance 3.6 > surface dust #1 size30 Expected a keyword > surface dust #1 size 30 > surface dust #1 size 40 > surface dust #1 size 50 > surface dust #1 size 20 > volume #1 level 0.2961 > volume #1 level 0.28 > volume #1 level 0.27 > hide #!2 models > volume #1 level 0.275 > color zone #1 near all distance 3.8 > color zone #1 near all distance 4 > color zone #1 near all distance 4.5 > color zone #1 near all distance 4.7 > color zone #1 near all distance 4.9 > color zone #1 near all distance 5 > color zone #1 near all distance 5.2 > color zone #1 near all distance 5.5 > volume #1 level 0.28 > volume #1 level 0.285 > volume #1 level 0.29 > volume #1 level 0.295 > volume #1 level 0.3 > volume #1 level 0.28 > show #!2 models > hide #!1 models > select /R:37-334 4607 atoms, 4670 bonds, 1 pseudobond, 283 residues, 2 models selected > select /N:1-128 1915 atoms, 1935 bonds, 128 residues, 1 model selected > select /G:6-62 887 atoms, 893 bonds, 57 residues, 1 model selected > color (#!2 & sel) #397979ff > select /B:3-340 5108 atoms, 5155 bonds, 338 residues, 1 model selected > color (#!2 & sel) #afe0e5ff > select add #2 16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 3 models selected > select subtract #2 5 models selected > show #!1 models > hide #!1 models > show #!1 models > color zone #1 near all distance 5.5 > color zone #1 near all distance 6 > color zone #1 near all distance 6.5 > color zone #1 near all distance 7 > color zone #1 near all distance 8 > hide #!1 models > select /B 5108 atoms, 5155 bonds, 338 residues, 1 model selected > color (#!2 & sel) #afe0e6ff > color (#!2 & sel) #afe017ff > color (#!2 & sel) #afe002ff > color (#!2 & sel) #afe018ff > color (#!2 & sel) #afe0f5ff > color (#!2 & sel) #afe018ff > color (#!2 & sel) #afe002ff > color (#!2 & sel) #afe019ff > color (#!2 & sel) #afe0faff > color (#!2 & sel) #afe019ff > color (#!2 & sel) #afe002ff > color (#!2 & sel) #afe01aff > color (#!2 & sel) #afe002ff > color (#!2 & sel) #afe016ff > color (#!2 & sel) #afe0e1ff > color (#!2 & sel) #afe016ff > color (#!2 & sel) #afe002ff > color (#!2 & sel) #afe019ff > color (#!2 & sel) #afe0faff > color (#!2 & sel) #af16faff > color (#!2 & sel) #afdcfaff > color (#!2 & sel) #af16faff > color (#!2 & sel) #af02faff > color (#!2 & sel) #af15faff > color (#!2 & sel) #afd2faff > color (#!2 & sel) #afe0faff > color (#!2 & sel) #af16faff > color (#!2 & sel) #af02faff > color (#!2 & sel) #af14faff > color (#!2 & sel) #afc8faff > color (#!2 & sel) #afd2faff > color (#!2 & sel) #afc8faff > color (#!2 & sel) #af14faff > color (#!2 & sel) #afd2faff > select add #2 16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 3 models selected > select subtract #2 5 models selected > select /R 4755 atoms, 4824 bonds, 1 pseudobond, 285 residues, 2 models selected > select /G 887 atoms, 893 bonds, 57 residues, 1 model selected > color (#!2 & sel) #397979ff > color (#!2 & sel) #390c79ff > color (#!2 & sel) #390179ff > color (#!2 & sel) #390b79ff > color (#!2 & sel) #396e79ff > color (#!2 & sel) #390b79ff > color (#!2 & sel) #390179ff > color (#!2 & sel) #390c79ff > color (#!2 & sel) #397979ff > color (#!2 & sel) #39790cff > color (#!2 & sel) #397901ff > color (#!2 & sel) #39790fff > color (#!2 & sel) #397996ff > color (#!2 & sel) #39790fff > color (#!2 & sel) #397901ff > color (#!2 & sel) #397979ff > color (#!2 & sel) #39790cff > color (#!2 & sel) #397901ff > color (#!2 & sel) #39790dff > color (#!2 & sel) #397982ff > color (#!2 & sel) #39790dff > color (#!2 & sel) #397901ff > color (#!2 & sel) #39790bff > color (#!2 & sel) #39796eff > color (#!2 & sel) #39790bff > color (#!2 & sel) #397901ff > color (#!2 & sel) #39790cff > color (#!2 & sel) #397979ff > color (#!2 & sel) #067979ff > color (#!2 & sel) #437979ff > color (#!2 & sel) #067979ff > color (#!2 & sel) #047979ff > color (#!2 & sel) #287979ff > select add #2 16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 3 models selected > select subtract #2 5 models selected > color #2 #afd2faff > undo > show #!1 models > color zone #1 near all distance 8 > hide #!1 models > select ::name=""LIG"" 40 atoms, 43 bonds, 1 residue, 1 model selected > color sel #f6f6f6ff > color sel #f3f3f3ff > color sel #b886c8ff > color sel #f3f3f3ff > color sel #9a9a9aff > color sel #9c9c9cff > color sel #f3f3f3ff > color sel #edf5f9ff > color sel white > color sel hot pink > show #!1 models > color zone #1 near all distance 8 > show sel surfaces > hide #!1 models > select add #2 16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 3 models selected > select subtract #2 6 models selected > select ::name=""LIG"" 40 atoms, 43 bonds, 1 residue, 1 model selected > hide sel surfaces > show sel cartoons > show sel atoms > hide sel cartoons > hide sel atoms > show sel atoms > ui tool show ""Color Actions"" > color sel orchid > color sel medium orchid [Repeated 1 time(s)] > select ::name=""CLR"" 148 atoms, 154 bonds, 2 residues, 1 model selected > color sel light gray > color zone #1 near all distance 8 > show #!1 models > select add #2 16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 2 models selected > select subtract #2 6 models selected > select add #2 16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 2 models selected > color zone #1 near all distance 8 > select subtract #2 6 models selected > volume #1 level 0.26 > volume #1 level 0.298 > volume #1 level 0.28 > color zone #1 near all distance 9 > select add #2 16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 2 models selected > hide #!1 models > color zone #1 near all distance 8 > show #!1 models > surface dust #1 size 30 > surface dust #1 size 50 > surface dust #1 size 80 > surface dust #1 size 26 > select subtract #2 6 models selected > hide #!1 models > select ::name=""CLR"" 148 atoms, 154 bonds, 2 residues, 1 model selected > color sel dark gray > color sel gray > color zone #1 near all distance 8 > show #!1 models > hide #!1 models > color sel light gray > color sel dark gray > color zone #1 near all distance 8 > show #!1 models > select add #2 16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 2 models selected > select subtract #2 6 models selected > hide #!1 models > select ::name=""LIG"" 40 atoms, 43 bonds, 1 residue, 1 model selected > color zone #1 near all distance 8 > show #!1 models > hide #!1 models > show #!1 models > select ::name=""LIG"" 40 atoms, 43 bonds, 1 residue, 1 model selected > hide #!2 models > select ::name=""LIG"" 40 atoms, 43 bonds, 1 residue, 1 model selected > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > show sel surfaces > hide #!2 models > show #!2 models > hide #!2 models > select ::name=""LIG"" 40 atoms, 43 bonds, 1 residue, 1 model selected > show #!2 models > select ::name=""CLR"" 148 atoms, 154 bonds, 2 residues, 1 model selected > hide #!1 models > delete H > show #!1 models > hide #!1 models > color zone #1 near all distance 8 > show #!1 models > hide #!1 models > delete O > color zone #1 near all distance 8 > show #!1 models > color zone #1 near all distance 7 [Repeated 1 time(s)] > color zone #1 near all distance 12 > color zone #1 near all distance 8 > hide #!1 models > hide sel surfaces > select add #2 6737 atoms, 6914 bonds, 3 pseudobonds, 1037 residues, 2 models selected > hide sel surfaces > select subtract #2 6 models selected > show #!1 models > hide #!2 models > select add #1 2 models selected > select subtract #1 Nothing selected > show #!2 models > hide #!1 models > show #!1 models > hide #!2 models > color zone #1 near #2 all dist 8 Expected a keyword > color zone #1 near #2 distance 8 > show #!2 models > hide #!1 models > show #!1 models > hide #!2 models > select add #1 2 models selected > hide #!1 models > select subtract #1 Nothing selected > show #!2 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > volume #1 level 0.169 > volume #1 level 0.1214 > volume #1 level 0.1532 > volume #1 level 0.05009 > volume #1 level 0.25 > hide #!2 models > volume #1 level 0.255 > volume #1 level 0.26 > volume #1 level 0.27 > volume #1 level 0.265 > color zone #1 near #2 distance 9 > surface dust #1 size50 Expected a keyword > surface dust #1 size 50 > volume #1 level 0.266 > volume #1 level 0.264 > volume #1 level 0.265 > color zone #1 near #2 distance 12 > color #1 #afd2faff > select /R 1946 atoms, 2015 bonds, 1 pseudobond, 285 residues, 2 models selected > show #!2 models > hide #!1 models > color (#!2 & sel) #655a9eff > select ::name=""CLR"" 54 atoms, 60 bonds, 2 residues, 1 model selected > color sel dark gray > select /A:15-394 1528 atoms, 1560 bonds, 2 pseudobonds, 228 residues, 2 models selected > color (#!2 & sel) #e5a69aff > select /B:3-340 2092 atoms, 2139 bonds, 338 residues, 1 model selected > color (#!2 & sel) #afd2faff > select /R:37-334 1892 atoms, 1955 bonds, 1 pseudobond, 283 residues, 2 models selected > select /N:1-128 781 atoms, 801 bonds, 128 residues, 1 model selected > color (#!2 & sel) #aa83afff > select /B:3-340 2092 atoms, 2139 bonds, 338 residues, 1 model selected > select /G:6-62 353 atoms, 359 bonds, 57 residues, 1 model selected > color (#!2 & sel) #655a9eff > color (#!2 & sel) #397979ff > select add #2 6737 atoms, 6914 bonds, 3 pseudobonds, 1037 residues, 3 models selected > select subtract #2 6 models selected > select ::name=""LIG"" 37 atoms, 40 bonds, 1 residue, 1 model selected > ui tool show ""Color Actions"" > color sel pale violet red > color sel orchid ""Unable to open monitor interface to \\\\\\\\.\\\DISPLAY2:"" ""操作成功完成。"" [Repeated 1 time(s)] ""Unable to get device information for 20550:"" ""操作成功完成。"" [Repeated 5 time(s)] ""Unable to open monitor interface to \\\\\\\\.\\\DISPLAY2:"" ""操作成功完成。"" > select add #2 6737 atoms, 6914 bonds, 3 pseudobonds, 1037 residues, 3 models selected > show #!1 models > color zone #1 near #2 distance 12 > hide #!1 models > select subtract #2 6 models selected > select ::name=""LIG"" 37 atoms, 40 bonds, 1 residue, 1 model selected > color (#!2 & sel) #f6f6f6ff > color (#!2 & sel) #e3e3e3ff > color (#!2 & sel) #c869acff > color (#!2 & sel) #f3f3f3ff > color (#!2 & sel) #c8ddddff > color (#!2 & sel) #003c87ff > color (#!2 & sel) #ddddddff > color (#!2 & sel) #ffffffff > color (#!2 & sel) #fdfdfdff > color (#!2 & sel) #edf5f9ff > color (#!2 & sel) #363a3bff > color (#!2 & sel) #edf5f9ff > show #!1 models > hide #!1 models > ui tool show ""Color Actions"" > color sel pale violet red > color zone #1 near #2 distance 12 > show #!1 models > hide #!1 models > ui tool show ""Color Actions"" > color sel pale violet red > show #!1 models > save ""D:/GHSR/A&M/结构/ligand1 Anamorelin/ligand1.cxs"" ——— End of log from Wed Nov 13 15:54:35 2024 ——— opened ChimeraX session > hide #!1 models > select add #2 6737 atoms, 6914 bonds, 3 pseudobonds, 1037 residues, 2 models selected > select subtract #2 6 models selected > select /R 1946 atoms, 2015 bonds, 1 pseudobond, 285 residues, 2 models selected > color (#!2 & sel) #655a9eff > color (#!2 & sel) #665555ff > color (#!2 & sel) #776666ff > color (#!2 & sel) #655a9eff > color (#!2 & sel) #665555ff > color (#!2 & sel) #776666ff > color (#!2 & sel) #7661a4ff > select add #2 6737 atoms, 6914 bonds, 3 pseudobonds, 1037 residues, 3 models selected > select subtract #2 6 models selected > select ::name=""LIG"" 37 atoms, 40 bonds, 1 residue, 1 model selected > color (#!2 & sel) #8ea087ff > color (#!2 & sel) #53bcafff > color (#!2 & sel) #53afacff > color (#!2 & sel) #53bcafff > color (#!2 & sel) #53afacff > color (#!2 & sel) #8ea087ff > select ::name=""CLR"" 54 atoms, 60 bonds, 2 residues, 1 model selected > color sel dark gray > select add #2 6737 atoms, 6914 bonds, 3 pseudobonds, 1037 residues, 2 models selected > select subtract #2 6 models selected > color zone #1 near all distance 8 > show #!1 models > ui mousemode right ""map eraser"" > volume erase #1 center 97.658,51.842,108.17 radius 16.371 Opened cryosparc_P309_J105_003_volume_map_sharp.mrc copy as #4, grid size 256,256,256, pixel 0.73, shown at step 1, values float32 > volume erase #4 center 94.439,59.294,100.52 radius 7.5686 > surface dust #4 size 7.3 > color zone #1 near all distance 8 > color zone #3 near all distance 8 > color zone #4 near all distance 8 > hide #3 models > surface dust #4 size 30 > hide #!4 models > show #!4 models > hide #!4 models > show #!4 models > show #3 models > color #3 #ffff0080 > volume erase #4 center 96.905,114.12,113.21 radius 2.9901 > volume erase #4 center 95.607,113.53,112.55 radius 2.9901 > hide #3 models > ui mousemode right translate > hide #!2 models > show #!2 models > hide #!4 models > show #!4 models > lighting soft > hide #!2 models > save ""D:/GHSR/A&M/结构/ligand1 Anamorelin/map.png"" width 1018 height 749 > supersample 4 transparentBackground true > show #!2 models > hide #!4 models > save ""D:/GHSR/A&M/结构/ligand1 Anamorelin/model.png"" width 1018 height 749 > supersample 4 transparentBackground true > save ""D:/GHSR/A&M/结构/ligand1 Anamorelin/ligand1.cxs"" Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 341, in process return copy_state(data, convert=convert) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 232, in copy_state return _copy(data) ^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 217, in _copy items = [(_copy(k), _copy(v)) for k, v in data.items()] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 217, in items = [(_copy(k), _copy(v)) for k, v in data.items()] ^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 230, in _copy return convert(data) ^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 339, in convert return add_obj(obj, parents) ^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 307, in _add_obj uid = self.unique_name.from_obj(self.session, obj) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 176, in from_obj raise RuntimeError( RuntimeError: Unable to restore objects of SphereModel class in ChimeraX- MapEraser bundle because the class name is not listed in the name to class table for session restore During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 1051, in save session.save(output, version=version, include_maps=include_maps) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 741, in save mgr.discovery(self._state_containers) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( ValueError: error processing: '_surface_updaters' -> -> : Unable to restore objects of SphereModel class in ChimeraX-MapEraser bundle because the class name is not listed in the name to class table for session restore ValueError: error processing: '_surface_updaters' -> -> : Unable to restore objects of SphereModel class in ChimeraX-MapEraser bundle because the class name is not listed in the name to class table for session restore File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 341, in process return copy_state(data, convert=convert) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 232, in copy_state return _copy(data) ^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 217, in _copy items = [(_copy(k), _copy(v)) for k, v in data.items()] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 217, in items = [(_copy(k), _copy(v)) for k, v in data.items()] ^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 230, in _copy return convert(data) ^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 339, in convert return add_obj(obj, parents) ^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 307, in _add_obj uid = self.unique_name.from_obj(self.session, obj) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 176, in from_obj raise RuntimeError( RuntimeError: Unable to restore objects of SphereModel class in ChimeraX- MapEraser bundle because the class name is not listed in the name to class table for session restore During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\toolbar\tool.py"", line 170, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\toolshed\info.py"", line 397, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\toolshed\\__init__.py"", line 1419, in run_provider return cls._get_func(api, ""run_provider"")(session, name, mgr, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\toolbar\\__init__.py"", line 37, in run_provider providers.run_provider(session, name) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\toolbar\providers.py"", line 56, in run_provider what(session) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\toolbar\providers.py"", line 38, in _file_save show_save_file_dialog(session) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 138, in show_save_file_dialog _dlg.display(session, **kw) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 62, in display run(session, cmd) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\commands\run.py"", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3213, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3213, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 101, in provider_save saver_info.save(session, path, **provider_kw) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core_formats\\__init__.py"", line 95, in save return cxs_save(session, path, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 1051, in save session.save(output, version=version, include_maps=include_maps) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 741, in save mgr.discovery(self._state_containers) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( ValueError: error processing: '_surface_updaters' -> -> : Unable to restore objects of SphereModel class in ChimeraX-MapEraser bundle because the class name is not listed in the name to class table for session restore ValueError: error processing: '_surface_updaters' -> -> : Unable to restore objects of SphereModel class in ChimeraX-MapEraser bundle because the class name is not listed in the name to class table for session restore File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( See log for complete Python traceback. > save ""D:/GHSR/A&M/结构/ligand1 Anamorelin/ligand1.cxs"" Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 341, in process return copy_state(data, convert=convert) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 232, in copy_state return _copy(data) ^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 217, in _copy items = [(_copy(k), _copy(v)) for k, v in data.items()] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 217, in items = [(_copy(k), _copy(v)) for k, v in data.items()] ^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 230, in _copy return convert(data) ^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 339, in convert return add_obj(obj, parents) ^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 307, in _add_obj uid = self.unique_name.from_obj(self.session, obj) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 176, in from_obj raise RuntimeError( RuntimeError: Unable to restore objects of SphereModel class in ChimeraX- MapEraser bundle because the class name is not listed in the name to class table for session restore During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 1051, in save session.save(output, version=version, include_maps=include_maps) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 741, in save mgr.discovery(self._state_containers) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( ValueError: error processing: '_surface_updaters' -> -> : Unable to restore objects of SphereModel class in ChimeraX-MapEraser bundle because the class name is not listed in the name to class table for session restore ValueError: error processing: '_surface_updaters' -> -> : Unable to restore objects of SphereModel class in ChimeraX-MapEraser bundle because the class name is not listed in the name to class table for session restore File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 341, in process return copy_state(data, convert=convert) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 232, in copy_state return _copy(data) ^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 217, in _copy items = [(_copy(k), _copy(v)) for k, v in data.items()] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 217, in items = [(_copy(k), _copy(v)) for k, v in data.items()] ^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 230, in _copy return convert(data) ^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 339, in convert return add_obj(obj, parents) ^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 307, in _add_obj uid = self.unique_name.from_obj(self.session, obj) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 176, in from_obj raise RuntimeError( RuntimeError: Unable to restore objects of SphereModel class in ChimeraX- MapEraser bundle because the class name is not listed in the name to class table for session restore During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\toolbar\tool.py"", line 170, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\toolshed\info.py"", line 397, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\toolshed\\__init__.py"", line 1419, in run_provider return cls._get_func(api, ""run_provider"")(session, name, mgr, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\toolbar\\__init__.py"", line 37, in run_provider providers.run_provider(session, name) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\toolbar\providers.py"", line 56, in run_provider what(session) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\toolbar\providers.py"", line 38, in _file_save show_save_file_dialog(session) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 138, in show_save_file_dialog _dlg.display(session, **kw) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 62, in display run(session, cmd) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\commands\run.py"", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3213, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3213, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 101, in provider_save saver_info.save(session, path, **provider_kw) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core_formats\\__init__.py"", line 95, in save return cxs_save(session, path, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 1051, in save session.save(output, version=version, include_maps=include_maps) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 741, in save mgr.discovery(self._state_containers) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( ValueError: error processing: '_surface_updaters' -> -> : Unable to restore objects of SphereModel class in ChimeraX-MapEraser bundle because the class name is not listed in the name to class table for session restore ValueError: error processing: '_surface_updaters' -> -> : Unable to restore objects of SphereModel class in ChimeraX-MapEraser bundle because the class name is not listed in the name to class table for session restore File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( See log for complete Python traceback. > save ""D:/GHSR/A&M/结构/ligand1 Anamorelin/1.cxs"" Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 341, in process return copy_state(data, convert=convert) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 232, in copy_state return _copy(data) ^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 217, in _copy items = [(_copy(k), _copy(v)) for k, v in data.items()] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 217, in items = [(_copy(k), _copy(v)) for k, v in data.items()] ^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 230, in _copy return convert(data) ^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 339, in convert return add_obj(obj, parents) ^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 307, in _add_obj uid = self.unique_name.from_obj(self.session, obj) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 176, in from_obj raise RuntimeError( RuntimeError: Unable to restore objects of SphereModel class in ChimeraX- MapEraser bundle because the class name is not listed in the name to class table for session restore During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 1051, in save session.save(output, version=version, include_maps=include_maps) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 741, in save mgr.discovery(self._state_containers) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( ValueError: error processing: '_surface_updaters' -> -> : Unable to restore objects of SphereModel class in ChimeraX-MapEraser bundle because the class name is not listed in the name to class table for session restore ValueError: error processing: '_surface_updaters' -> -> : Unable to restore objects of SphereModel class in ChimeraX-MapEraser bundle because the class name is not listed in the name to class table for session restore File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 341, in process return copy_state(data, convert=convert) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 232, in copy_state return _copy(data) ^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 217, in _copy items = [(_copy(k), _copy(v)) for k, v in data.items()] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 217, in items = [(_copy(k), _copy(v)) for k, v in data.items()] ^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 230, in _copy return convert(data) ^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 339, in convert return add_obj(obj, parents) ^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 307, in _add_obj uid = self.unique_name.from_obj(self.session, obj) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 176, in from_obj raise RuntimeError( RuntimeError: Unable to restore objects of SphereModel class in ChimeraX- MapEraser bundle because the class name is not listed in the name to class table for session restore During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\toolbar\tool.py"", line 170, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\toolshed\info.py"", line 397, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\toolshed\\__init__.py"", line 1419, in run_provider return cls._get_func(api, ""run_provider"")(session, name, mgr, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\toolbar\\__init__.py"", line 37, in run_provider providers.run_provider(session, name) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\toolbar\providers.py"", line 56, in run_provider what(session) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\toolbar\providers.py"", line 38, in _file_save show_save_file_dialog(session) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 138, in show_save_file_dialog _dlg.display(session, **kw) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 62, in display run(session, cmd) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\commands\run.py"", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3213, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3213, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 101, in provider_save saver_info.save(session, path, **provider_kw) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core_formats\\__init__.py"", line 95, in save return cxs_save(session, path, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 1051, in save session.save(output, version=version, include_maps=include_maps) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 741, in save mgr.discovery(self._state_containers) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( ValueError: error processing: '_surface_updaters' -> -> : Unable to restore objects of SphereModel class in ChimeraX-MapEraser bundle because the class name is not listed in the name to class table for session restore ValueError: error processing: '_surface_updaters' -> -> : Unable to restore objects of SphereModel class in ChimeraX-MapEraser bundle because the class name is not listed in the name to class table for session restore File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( See log for complete Python traceback. > save D:/GHSR/A&M/结构/ligand1.cxs Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 341, in process return copy_state(data, convert=convert) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 232, in copy_state return _copy(data) ^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 217, in _copy items = [(_copy(k), _copy(v)) for k, v in data.items()] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 217, in items = [(_copy(k), _copy(v)) for k, v in data.items()] ^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 230, in _copy return convert(data) ^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 339, in convert return add_obj(obj, parents) ^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 307, in _add_obj uid = self.unique_name.from_obj(self.session, obj) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 176, in from_obj raise RuntimeError( RuntimeError: Unable to restore objects of SphereModel class in ChimeraX- MapEraser bundle because the class name is not listed in the name to class table for session restore During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 1051, in save session.save(output, version=version, include_maps=include_maps) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 741, in save mgr.discovery(self._state_containers) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( ValueError: error processing: '_surface_updaters' -> -> : Unable to restore objects of SphereModel class in ChimeraX-MapEraser bundle because the class name is not listed in the name to class table for session restore ValueError: error processing: '_surface_updaters' -> -> : Unable to restore objects of SphereModel class in ChimeraX-MapEraser bundle because the class name is not listed in the name to class table for session restore File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 341, in process return copy_state(data, convert=convert) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 232, in copy_state return _copy(data) ^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 217, in _copy items = [(_copy(k), _copy(v)) for k, v in data.items()] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 217, in items = [(_copy(k), _copy(v)) for k, v in data.items()] ^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\state.py"", line 230, in _copy return convert(data) ^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 339, in convert return add_obj(obj, parents) ^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 307, in _add_obj uid = self.unique_name.from_obj(self.session, obj) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 176, in from_obj raise RuntimeError( RuntimeError: Unable to restore objects of SphereModel class in ChimeraX- MapEraser bundle because the class name is not listed in the name to class table for session restore During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 127, in lambda *args, ses=session: show_save_file_dialog(ses), tool_tip=""Save output file"", ^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 138, in show_save_file_dialog _dlg.display(session, **kw) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 62, in display run(session, cmd) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\commands\run.py"", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3213, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3213, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 101, in provider_save saver_info.save(session, path, **provider_kw) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core_formats\\__init__.py"", line 95, in save return cxs_save(session, path, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 1051, in save session.save(output, version=version, include_maps=include_maps) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 741, in save mgr.discovery(self._state_containers) File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( ValueError: error processing: '_surface_updaters' -> -> : Unable to restore objects of SphereModel class in ChimeraX-MapEraser bundle because the class name is not listed in the name to class table for session restore ValueError: error processing: '_surface_updaters' -> -> : Unable to restore objects of SphereModel class in ChimeraX-MapEraser bundle because the class name is not listed in the name to class table for session restore File ""C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( See log for complete Python traceback. OpenGL version: 3.3.0 - Build 31.0.101.3959 OpenGL renderer: Intel(R) Iris(R) Xe Graphics OpenGL vendor: Intel Python: 3.11.4 Locale: zh_CN.cp936 Qt version: PyQt6 6.7.1, Qt 6.7.1 Qt runtime version: 6.7.3 Qt platform: windows Manufacturer: HUAWEI Model: MRGF-XX OS: Microsoft Windows 11 家庭中文版 (Build 22631) Memory: 16,890,716,160 MaxProcessMemory: 137,438,953,344 CPU: 16 12th Gen Intel(R) Core(TM) i7-1260P OSLanguage: zh-CN Installed Packages: alabaster: 1.0.0 appdirs: 1.4.4 asttokens: 2.4.1 auditwheel: 6.1.0 babel: 2.16.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 2.7.1 build: 1.2.1 certifi: 2024.8.30 cftime: 1.6.4.post1 charset-normalizer: 3.4.0 ChimeraX-AddCharge: 1.5.17 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.16.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.58.7 ChimeraX-AtomicLibrary: 14.1.11 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.4.7 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.13 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.4.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.9rc202411041924 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.4 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.5 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.2 ChimeraX-Label: 1.1.11 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.6 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.2 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.17 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.6 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.2.4 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.14 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.0 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.18.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.41 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 comtypes: 1.4.5 contourpy: 1.3.0 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.7 decorator: 5.1.1 docutils: 0.21.2 executing: 2.1.0 filelock: 3.15.4 fonttools: 4.54.1 funcparserlib: 2.0.0a0 glfw: 2.7.0 grako: 3.16.5 h5py: 3.12.1 html2text: 2024.2.26 idna: 3.10 ihm: 1.3 imagecodecs: 2024.6.1 imagesize: 1.4.1 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.5 jedi: 0.19.1 Jinja2: 3.1.4 jupyter_client: 8.6.2 jupyter_core: 5.7.2 jupyterlab_widgets: 3.0.13 kiwisolver: 1.4.7 line_profiler: 4.1.3 lxml: 5.2.2 lz4: 4.3.3 MarkupSafe: 3.0.2 matplotlib: 3.9.2 matplotlib-inline: 0.1.7 msgpack: 1.0.8 ndindex: 1.9.2 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.1 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pillow: 10.4.0 pip: 24.2 pkginfo: 1.11.1 platformdirs: 4.3.6 prompt_toolkit: 3.0.48 psutil: 6.0.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.31 Pygments: 2.18.0 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.2.0 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.7.1 PyQt6-Qt6: 6.7.3 PyQt6-WebEngine-commercial: 6.7.0 PyQt6-WebEngine-Qt6: 6.7.3 PyQt6-WebEngineSubwheel-Qt6: 6.7.3 PyQt6_sip: 13.8.0 python-dateutil: 2.9.0.post0 pytz: 2024.2 pywin32: 306 pyzmq: 26.2.0 qtconsole: 5.5.2 QtPy: 2.4.2 qtshim: 1.0 RandomWords: 0.4.0 requests: 2.32.3 scipy: 1.14.0 setuptools: 72.1.0 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.6 Sphinx: 8.0.2 sphinx-autodoc-typehints: 2.2.3 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.10.1 tcia_utils: 1.5.1 tifffile: 2024.7.24 tinyarray: 1.2.4 tornado: 6.4.1 traitlets: 5.14.3 typing_extensions: 4.12.2 tzdata: 2024.2 urllib3: 2.2.3 wcwidth: 0.2.13 webcolors: 24.6.0 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.13 WMI: 1.5.1 }}} " defect closed normal Sessions fixed all ChimeraX