![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 15 months ago
Closed 15 months ago
#15785 closed defect (can't reproduce)
Crash moving window between displays
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-11.3.1-x86_64-i386-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x000070000b3c8000 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 324 in wait
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 622 in wait
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1392 in run
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Current thread 0x000000011930ee00 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 315 in event_loop
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1003 in init
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1166 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, chimerax.surface._surface, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.atom_search.ast, chimerax.chem_group._chem_group, chimerax.coulombic._esp, chimerax.mlp._mlp (total: 56)
Process: ChimeraX [3601]
Path: /Applications/ChimeraX-1.8.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.8.0 (1.8.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [3601]
User ID: 501
Date/Time: 2024-08-20 09:13:18.008 +0800
OS Version: macOS 11.3.1 (20E241)
Report Version: 12
Bridge OS Version: 5.4 (18P4663)
Anonymous UUID: 15658701-B05F-B03E-3230-25D4BFC0FF6C
Sleep/Wake UUID: B6700FB3-CB20-4653-9F33-B2754F102FAA
Time Awake Since Boot: 23000 seconds
Time Since Wake: 170 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: EXC_I386_GPFLT
Exception Note: EXC_CORPSE_NOTIFY
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff20645946 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff20674615 pthread_kill + 263
2 libsystem_c.dylib 0x00007fff20558be5 raise + 26
3 org.python.python 0x000000010b71b534 faulthandler_fatal_error + 388
4 libsystem_platform.dylib 0x00007fff206b9d7d _sigtramp + 29
5 ??? 000000000000000000 0 + 0
6 libqcocoa.dylib 0x000000012b558566 0x12b4fd000 + 374118
7 com.apple.AppKit 0x00007fff22f93450 _NSViewHierarchyDidChangeBackingProperties + 394
8 com.apple.AppKit 0x00007fff238157c9 -[NSWindow _postWindowDidChangeBackingPropertiesAndDisplayWindowForPreviousBackingScaleFactor:previousColorSpace:] + 222
9 com.apple.AppKit 0x00007fff231b469f __67-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]_block_invoke + 552
10 com.apple.AppKit 0x00007fff22fba11b NSPerformVisuallyAtomicChange + 132
11 com.apple.AppKit 0x00007fff231b4471 -[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:] + 69
12 com.apple.AppKit 0x00007fff22fbb96c -[NSWindow _setFrameCommon:display:fromServer:] + 1401
13 com.apple.AppKit 0x00007fff230f3804 -[NSWindow _windowMovedToRect:] + 129
14 com.apple.AppKit 0x00007fff230f366f -[NSWindow _windowMoved:] + 1145
15 com.apple.AppKit 0x00007fff230f31d4 -[NSWindow _internalHandleAppKitDefinedEvent:] + 239
16 com.apple.AppKit 0x00007fff230f2410 -[NSWindow(NSEventRouting) _reallySendEvent:isDelayedEvent:] + 3706
17 com.apple.AppKit 0x00007fff230f1376 -[NSWindow(NSEventRouting) sendEvent:] + 347
18 libqcocoa.dylib 0x000000012b56ba94 0x12b4fd000 + 453268
19 com.apple.AppKit 0x00007fff230f01b5 -[NSApplication(NSEvent) sendEvent:] + 2961
20 libqcocoa.dylib 0x000000012b506fea 0x12b4fd000 + 40938
21 com.apple.AppKit 0x00007fff233c8979 -[NSApplication _handleEvent:] + 65
22 com.apple.AppKit 0x00007fff22f5869e -[NSApplication run] + 623
23 libqcocoa.dylib 0x000000012b513f0d 0x12b4fd000 + 93965
24 QtCore 0x0000000118777616 QEventLoop::exec(QFlags) + 486
25 QtCore 0x000000011876e117 QCoreApplication::exec() + 119
26 QtWidgets.abi3.so 0x000000011d31d14c meth_QApplication_exec(_object*, _object*) + 92
27 org.python.python 0x000000010b5ae1da cfunction_call + 90
28 org.python.python 0x000000010b548ff1 _PyObject_MakeTpCall + 129
29 org.python.python 0x000000010b677277 _PyEval_EvalFrameDefault + 61255
30 org.python.python 0x000000010b666fea PyEval_EvalCode + 282
31 org.python.python 0x000000010b661873 builtin_exec + 483
32 org.python.python 0x000000010b5aeb34 cfunction_vectorcall_FASTCALL_KEYWORDS + 68
33 org.python.python 0x000000010b67717f _PyEval_EvalFrameDefault + 61007
34 org.python.python 0x000000010b67d280 _PyEval_Vector + 128
35 org.python.python 0x000000010b71465d pymain_run_module + 253
36 org.python.python 0x000000010b714121 Py_RunMain + 2225
37 org.python.python 0x000000010b7150db pymain_main + 43
38 org.python.python 0x000000010b7150aa Py_Main + 42
39 edu.ucsf.cgl.ChimeraX 0x000000010b4a0d9a main + 122
40 libdyld.dylib 0x00007fff2068ff3d start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff20641d4e __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20674ea1 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010ce422df blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff20641d4e __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20674ea1 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010ce422df blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff20641d4e __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20674ea1 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010ce422df blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 4:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff206481ea kevent64 + 10
1 QtWebEngineCore 0x00000001230a47f4 0x11e88d000 + 75593716
2 QtWebEngineCore 0x00000001230a45df 0x11e88d000 + 75593183
3 QtWebEngineCore 0x0000000123043051 0x11e88d000 + 75194449
4 QtWebEngineCore 0x0000000122ff60d8 0x11e88d000 + 74879192
5 QtWebEngineCore 0x00000001230696a8 0x11e88d000 + 75351720
6 QtWebEngineCore 0x000000012304f8cd 0x11e88d000 + 75245773
7 QtWebEngineCore 0x000000012306983e 0x11e88d000 + 75352126
8 QtWebEngineCore 0x0000000123085538 0x11e88d000 + 75466040
9 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 5:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff2063f32a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2063f69c mach_msg + 60
2 QtWebEngineCore 0x00000001230ae7b6 0x11e88d000 + 75634614
3 QtWebEngineCore 0x000000012301d246 0x11e88d000 + 75039302
4 QtWebEngineCore 0x000000012305b48a 0x11e88d000 + 75293834
5 QtWebEngineCore 0x000000012305c3ca 0x11e88d000 + 75297738
6 QtWebEngineCore 0x000000012305bcfd 0x11e88d000 + 75295997
7 QtWebEngineCore 0x000000012305bbef 0x11e88d000 + 75295727
8 QtWebEngineCore 0x0000000123085538 0x11e88d000 + 75466040
9 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 6:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff2063f32a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2063f69c mach_msg + 60
2 QtWebEngineCore 0x00000001230ae7b6 0x11e88d000 + 75634614
3 QtWebEngineCore 0x000000012301d246 0x11e88d000 + 75039302
4 QtWebEngineCore 0x000000012305b48a 0x11e88d000 + 75293834
5 QtWebEngineCore 0x000000012305c3ca 0x11e88d000 + 75297738
6 QtWebEngineCore 0x000000012305bc6d 0x11e88d000 + 75295853
7 QtWebEngineCore 0x000000012305bc14 0x11e88d000 + 75295764
8 QtWebEngineCore 0x0000000123085538 0x11e88d000 + 75466040
9 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 7:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff206481ea kevent64 + 10
1 QtWebEngineCore 0x00000001230a47f4 0x11e88d000 + 75593716
2 QtWebEngineCore 0x00000001230a45df 0x11e88d000 + 75593183
3 QtWebEngineCore 0x0000000123043051 0x11e88d000 + 75194449
4 QtWebEngineCore 0x0000000122ff60d8 0x11e88d000 + 74879192
5 QtWebEngineCore 0x00000001230696a8 0x11e88d000 + 75351720
6 QtWebEngineCore 0x00000001216ab302 0x11e88d000 + 48358146
7 QtWebEngineCore 0x000000012306983e 0x11e88d000 + 75352126
8 QtWebEngineCore 0x0000000123085538 0x11e88d000 + 75466040
9 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 8:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2063f32a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2063f69c mach_msg + 60
2 QtWebEngineCore 0x00000001230ae7b6 0x11e88d000 + 75634614
3 QtWebEngineCore 0x000000012301d246 0x11e88d000 + 75039302
4 QtWebEngineCore 0x000000012301d1b3 0x11e88d000 + 75039155
5 QtWebEngineCore 0x0000000122fc20c9 0x11e88d000 + 74666185
6 QtWebEngineCore 0x0000000123043051 0x11e88d000 + 75194449
7 QtWebEngineCore 0x0000000122ff60d8 0x11e88d000 + 74879192
8 QtWebEngineCore 0x00000001230696a8 0x11e88d000 + 75351720
9 QtWebEngineCore 0x000000012306983e 0x11e88d000 + 75352126
10 QtWebEngineCore 0x0000000123085538 0x11e88d000 + 75466040
11 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
12 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 9:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff2063f32a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2063f69c mach_msg + 60
2 QtWebEngineCore 0x00000001230ae7b6 0x11e88d000 + 75634614
3 QtWebEngineCore 0x000000012301d246 0x11e88d000 + 75039302
4 QtWebEngineCore 0x0000000122fc2062 0x11e88d000 + 74666082
5 QtWebEngineCore 0x0000000123043051 0x11e88d000 + 75194449
6 QtWebEngineCore 0x0000000122ff60d8 0x11e88d000 + 74879192
7 QtWebEngineCore 0x00000001230696a8 0x11e88d000 + 75351720
8 QtWebEngineCore 0x000000012306983e 0x11e88d000 + 75352126
9 QtWebEngineCore 0x0000000123085538 0x11e88d000 + 75466040
10 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 10:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff206481ea kevent64 + 10
1 QtWebEngineCore 0x00000001230a47f4 0x11e88d000 + 75593716
2 QtWebEngineCore 0x00000001230a45df 0x11e88d000 + 75593183
3 QtWebEngineCore 0x0000000123043051 0x11e88d000 + 75194449
4 QtWebEngineCore 0x0000000122ff60d8 0x11e88d000 + 74879192
5 QtWebEngineCore 0x00000001230696a8 0x11e88d000 + 75351720
6 QtWebEngineCore 0x0000000125db2e02 0x11e88d000 + 122838530
7 QtWebEngineCore 0x000000012306983e 0x11e88d000 + 75352126
8 QtWebEngineCore 0x0000000123085538 0x11e88d000 + 75466040
9 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 11:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff20641d4e __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20674ea1 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x0000000123084944 0x11e88d000 + 75462980
3 QtWebEngineCore 0x00000001254b11c5 0x11e88d000 + 113394117
4 QtWebEngineCore 0x0000000123085538 0x11e88d000 + 75466040
5 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 12:: ThreadPoolSingleThreadSharedForeground0
0 libsystem_kernel.dylib 0x00007fff2063f32a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2063f69c mach_msg + 60
2 QtWebEngineCore 0x00000001230ae7b6 0x11e88d000 + 75634614
3 QtWebEngineCore 0x000000012301d246 0x11e88d000 + 75039302
4 QtWebEngineCore 0x000000012305b48a 0x11e88d000 + 75293834
5 QtWebEngineCore 0x000000012305be57 0x11e88d000 + 75296343
6 QtWebEngineCore 0x000000012305bd2d 0x11e88d000 + 75296045
7 QtWebEngineCore 0x000000012305bc28 0x11e88d000 + 75295784
8 QtWebEngineCore 0x0000000123085538 0x11e88d000 + 75466040
9 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 13:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2063f32a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2063f69c mach_msg + 60
2 QtWebEngineCore 0x00000001230ae7b6 0x11e88d000 + 75634614
3 QtWebEngineCore 0x000000012301d246 0x11e88d000 + 75039302
4 QtWebEngineCore 0x000000012301d1b3 0x11e88d000 + 75039155
5 QtWebEngineCore 0x0000000122fc20c9 0x11e88d000 + 74666185
6 QtWebEngineCore 0x0000000123043051 0x11e88d000 + 75194449
7 QtWebEngineCore 0x0000000122ff60d8 0x11e88d000 + 74879192
8 QtWebEngineCore 0x00000001230696a8 0x11e88d000 + 75351720
9 QtWebEngineCore 0x000000012306983e 0x11e88d000 + 75352126
10 QtWebEngineCore 0x0000000123085538 0x11e88d000 + 75466040
11 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
12 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 14:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff2063f32a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2063f69c mach_msg + 60
2 QtWebEngineCore 0x00000001230ae7b6 0x11e88d000 + 75634614
3 QtWebEngineCore 0x000000012301d246 0x11e88d000 + 75039302
4 QtWebEngineCore 0x000000012301d1b3 0x11e88d000 + 75039155
5 QtWebEngineCore 0x0000000122fc20c9 0x11e88d000 + 74666185
6 QtWebEngineCore 0x0000000123043051 0x11e88d000 + 75194449
7 QtWebEngineCore 0x0000000122ff60d8 0x11e88d000 + 74879192
8 QtWebEngineCore 0x00000001230696a8 0x11e88d000 + 75351720
9 QtWebEngineCore 0x000000012306983e 0x11e88d000 + 75352126
10 QtWebEngineCore 0x0000000123085538 0x11e88d000 + 75466040
11 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
12 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 15:: NetworkService
0 libsystem_kernel.dylib 0x00007fff206481ea kevent64 + 10
1 QtWebEngineCore 0x00000001230a47f4 0x11e88d000 + 75593716
2 QtWebEngineCore 0x00000001230a45df 0x11e88d000 + 75593183
3 QtWebEngineCore 0x0000000123043051 0x11e88d000 + 75194449
4 QtWebEngineCore 0x0000000122ff60d8 0x11e88d000 + 74879192
5 QtWebEngineCore 0x00000001230696a8 0x11e88d000 + 75351720
6 QtWebEngineCore 0x000000012306983e 0x11e88d000 + 75352126
7 QtWebEngineCore 0x0000000123085538 0x11e88d000 + 75466040
8 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2063f32a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2063f69c mach_msg + 60
2 QtWebEngineCore 0x00000001230ae7b6 0x11e88d000 + 75634614
3 QtWebEngineCore 0x000000012301d246 0x11e88d000 + 75039302
4 QtWebEngineCore 0x000000012301d1b3 0x11e88d000 + 75039155
5 QtWebEngineCore 0x0000000122fc20c9 0x11e88d000 + 74666185
6 QtWebEngineCore 0x0000000123043051 0x11e88d000 + 75194449
7 QtWebEngineCore 0x0000000122ff60d8 0x11e88d000 + 74879192
8 QtWebEngineCore 0x00000001230696a8 0x11e88d000 + 75351720
9 QtWebEngineCore 0x000000012306983e 0x11e88d000 + 75352126
10 QtWebEngineCore 0x0000000123085538 0x11e88d000 + 75466040
11 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
12 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 17:: ThreadPoolSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff2063f32a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2063f69c mach_msg + 60
2 QtWebEngineCore 0x00000001230ae7b6 0x11e88d000 + 75634614
3 QtWebEngineCore 0x000000012301d246 0x11e88d000 + 75039302
4 QtWebEngineCore 0x000000012305b48a 0x11e88d000 + 75293834
5 QtWebEngineCore 0x000000012305c3ca 0x11e88d000 + 75297738
6 QtWebEngineCore 0x000000012305bd5d 0x11e88d000 + 75296093
7 QtWebEngineCore 0x000000012305bc1e 0x11e88d000 + 75295774
8 QtWebEngineCore 0x0000000123085538 0x11e88d000 + 75466040
9 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 18:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2063f32a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2063f69c mach_msg + 60
2 QtWebEngineCore 0x00000001230ae7b6 0x11e88d000 + 75634614
3 QtWebEngineCore 0x000000012301d246 0x11e88d000 + 75039302
4 QtWebEngineCore 0x000000012301d1b3 0x11e88d000 + 75039155
5 QtWebEngineCore 0x0000000122fc20c9 0x11e88d000 + 74666185
6 QtWebEngineCore 0x0000000123043051 0x11e88d000 + 75194449
7 QtWebEngineCore 0x0000000122ff60d8 0x11e88d000 + 74879192
8 QtWebEngineCore 0x00000001230696a8 0x11e88d000 + 75351720
9 QtWebEngineCore 0x000000012306983e 0x11e88d000 + 75352126
10 QtWebEngineCore 0x0000000123085538 0x11e88d000 + 75466040
11 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
12 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 19:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff2063f32a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2063f69c mach_msg + 60
2 QtWebEngineCore 0x00000001230ae7b6 0x11e88d000 + 75634614
3 QtWebEngineCore 0x000000012301d246 0x11e88d000 + 75039302
4 QtWebEngineCore 0x000000012301d1b3 0x11e88d000 + 75039155
5 QtWebEngineCore 0x0000000122fc20c9 0x11e88d000 + 74666185
6 QtWebEngineCore 0x0000000123043051 0x11e88d000 + 75194449
7 QtWebEngineCore 0x0000000122ff60d8 0x11e88d000 + 74879192
8 QtWebEngineCore 0x00000001230696a8 0x11e88d000 + 75351720
9 QtWebEngineCore 0x000000012306983e 0x11e88d000 + 75352126
10 QtWebEngineCore 0x0000000123085538 0x11e88d000 + 75466040
11 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
12 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 20:: ThreadPoolSingleThreadSharedBackgroundBlocking2
0 libsystem_kernel.dylib 0x00007fff2063f32a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2063f69c mach_msg + 60
2 QtWebEngineCore 0x00000001230ae7b6 0x11e88d000 + 75634614
3 QtWebEngineCore 0x000000012301d246 0x11e88d000 + 75039302
4 QtWebEngineCore 0x000000012305b48a 0x11e88d000 + 75293834
5 QtWebEngineCore 0x000000012305be57 0x11e88d000 + 75296343
6 QtWebEngineCore 0x000000012305bc9d 0x11e88d000 + 75295901
7 QtWebEngineCore 0x000000012305bc3c 0x11e88d000 + 75295804
8 QtWebEngineCore 0x0000000123085538 0x11e88d000 + 75466040
9 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 21:
0 libsystem_kernel.dylib 0x00007fff20641d4e __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20674ea1 _pthread_cond_wait + 1298
2 libc++.1.dylib 0x00007fff205ddd72 std::__1::condition_variable::wait(std::__1::unique_lock&) + 18
3 QtWebEngineCore 0x0000000124fcc196 0x11e88d000 + 108261782
4 QtWebEngineCore 0x0000000124fcd88b 0x11e88d000 + 108267659
5 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 22:
0 libsystem_kernel.dylib 0x00007fff20641d4e __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20674ea1 _pthread_cond_wait + 1298
2 libc++.1.dylib 0x00007fff205ddd72 std::__1::condition_variable::wait(std::__1::unique_lock&) + 18
3 QtWebEngineCore 0x0000000124fcc196 0x11e88d000 + 108261782
4 QtWebEngineCore 0x0000000124fcd88b 0x11e88d000 + 108267659
5 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 23:
0 libsystem_kernel.dylib 0x00007fff20641d4e __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20674ea1 _pthread_cond_wait + 1298
2 libc++.1.dylib 0x00007fff205ddd72 std::__1::condition_variable::wait(std::__1::unique_lock&) + 18
3 QtWebEngineCore 0x0000000124fcc196 0x11e88d000 + 108261782
4 QtWebEngineCore 0x0000000124fcd88b 0x11e88d000 + 108267659
5 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 24:
0 libsystem_kernel.dylib 0x00007fff20641d4e __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20674ea1 _pthread_cond_wait + 1298
2 libc++.1.dylib 0x00007fff205ddd72 std::__1::condition_variable::wait(std::__1::unique_lock&) + 18
3 QtWebEngineCore 0x0000000124fcc196 0x11e88d000 + 108261782
4 QtWebEngineCore 0x0000000124fcd88b 0x11e88d000 + 108267659
5 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 25:
0 libsystem_kernel.dylib 0x00007fff20641d4e __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20674ea1 _pthread_cond_wait + 1298
2 libc++.1.dylib 0x00007fff205ddd72 std::__1::condition_variable::wait(std::__1::unique_lock&) + 18
3 QtWebEngineCore 0x0000000124fcc196 0x11e88d000 + 108261782
4 QtWebEngineCore 0x0000000124fcd88b 0x11e88d000 + 108267659
5 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 26:
0 libsystem_kernel.dylib 0x00007fff20641d4e __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20674ea1 _pthread_cond_wait + 1298
2 libc++.1.dylib 0x00007fff205ddd72 std::__1::condition_variable::wait(std::__1::unique_lock&) + 18
3 QtWebEngineCore 0x0000000124fcc196 0x11e88d000 + 108261782
4 QtWebEngineCore 0x0000000124fcd88b 0x11e88d000 + 108267659
5 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 27:
0 libsystem_kernel.dylib 0x00007fff20641d4e __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20674ea1 _pthread_cond_wait + 1298
2 libc++.1.dylib 0x00007fff205ddd72 std::__1::condition_variable::wait(std::__1::unique_lock&) + 18
3 QtWebEngineCore 0x0000000124fcc196 0x11e88d000 + 108261782
4 QtWebEngineCore 0x0000000124fcd88b 0x11e88d000 + 108267659
5 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 28:
0 libsystem_kernel.dylib 0x00007fff20641d4e __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20674ea1 _pthread_cond_wait + 1298
2 libc++.1.dylib 0x00007fff205ddd72 std::__1::condition_variable::wait(std::__1::unique_lock&) + 18
3 QtWebEngineCore 0x0000000124fcc196 0x11e88d000 + 108261782
4 QtWebEngineCore 0x0000000124fcd88b 0x11e88d000 + 108267659
5 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 29:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff2063f32a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2063f69c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2076dc6f __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff2076c34f __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff2076b75c CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff230edbaa _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 30:
0 libsystem_pthread.dylib 0x00007fff20670484 start_wqthread + 0
Thread 31:
0 libsystem_pthread.dylib 0x00007fff20670484 start_wqthread + 0
Thread 32:
0 libsystem_pthread.dylib 0x00007fff20670484 start_wqthread + 0
Thread 33:
0 libsystem_pthread.dylib 0x00007fff20670484 start_wqthread + 0
Thread 34:
0 libsystem_pthread.dylib 0x00007fff20670484 start_wqthread + 0
Thread 35:
0 libsystem_pthread.dylib 0x00007fff20670484 start_wqthread + 0
Thread 36:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff2063f32a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2063f69c mach_msg + 60
2 QtWebEngineCore 0x00000001230ae7b6 0x11e88d000 + 75634614
3 QtWebEngineCore 0x000000012301d246 0x11e88d000 + 75039302
4 QtWebEngineCore 0x000000012305b48a 0x11e88d000 + 75293834
5 QtWebEngineCore 0x000000012305be57 0x11e88d000 + 75296343
6 QtWebEngineCore 0x000000012305bc6d 0x11e88d000 + 75295853
7 QtWebEngineCore 0x000000012305bc14 0x11e88d000 + 75295764
8 QtWebEngineCore 0x0000000123085538 0x11e88d000 + 75466040
9 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 37:
0 libsystem_kernel.dylib 0x00007fff20641d4e __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20674ea1 _pthread_cond_wait + 1298
2 org.python.python 0x000000010b7011c4 PyThread_acquire_lock_timed + 340
3 org.python.python 0x000000010b784cee acquire_timed + 318
4 org.python.python 0x000000010b784f2c lock_PyThread_acquire_lock + 44
5 org.python.python 0x000000010b55a737 method_vectorcall_VARARGS_KEYWORDS + 167
6 org.python.python 0x000000010b67717f _PyEval_EvalFrameDefault + 61007
7 org.python.python 0x000000010b67d280 _PyEval_Vector + 128
8 org.python.python 0x000000010b54d456 method_vectorcall + 454
9 org.python.python 0x000000010b785a76 thread_run + 230
10 org.python.python 0x000000010b700e54 pythread_wrapper + 36
11 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
12 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 38:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff2063f32a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2063f69c mach_msg + 60
2 QtWebEngineCore 0x00000001230ae7b6 0x11e88d000 + 75634614
3 QtWebEngineCore 0x000000012301d246 0x11e88d000 + 75039302
4 QtWebEngineCore 0x000000012305b48a 0x11e88d000 + 75293834
5 QtWebEngineCore 0x000000012305be57 0x11e88d000 + 75296343
6 QtWebEngineCore 0x000000012305bcfd 0x11e88d000 + 75295997
7 QtWebEngineCore 0x000000012305bbef 0x11e88d000 + 75295727
8 QtWebEngineCore 0x0000000123085538 0x11e88d000 + 75466040
9 libsystem_pthread.dylib 0x00007fff20674954 _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff206704a7 thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000011930ee00 rcx: 0x00007f88f3fdd3a8 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x000000000000000b rbp: 0x00007f88f3fdd3d0 rsp: 0x00007f88f3fdd3a8
r8: 0x0000000000000002 r9: 0xcccccccccccccccd r10: 0x000000011930ee00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x0000000000000001 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff20645946 rfl: 0x0000000000000246 cr2: 0x000000010ba1f068
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream:
8b 45 c0 48 85 c0 74 14-f0 83 28 01 75 0e 48 8b .E.H..t...(.u.H.
7d c0 e8 d7 9e 02 00 eb-03 48 89 c3 48 8d 7d e8 }........H..H.}.
e8 07 94 02 00 48 89 df-e8 77 8b 02 00 66 2e 0f .....H...w...f..
1f 84 00 00 00 00 00 0f-1f 00 55 48 89 e5 41 57 ..........UH..AW
41 56 53 48 83 ec 58 49-89 ff 48 8b 05 01 1b 05 AVSH..XI..H.....
00 48 8b 0c 07 8b 49 04-48 8b 7c 07 08 48 8b 07 .H....I.H.|..H..
[ff]90 68 01 00 00 f2 0f-11 45 b0 e8 7a f7 fb ff ..h......E..z... /Applications/ChimeraX-1.8.app/Contents/MacOS/ChimeraX
0x10b4af000 - 0x10b886fff +org.python.python (3.11.4, [c] 2001-2023 Python Software Foundation. - 3.11.4) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/Python
0x10bde3000 - 0x10bdeefff +math.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/math.cpython-311-darwin.so
0x10beff000 - 0x10bf0efff +_datetime.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_datetime.cpython-311-darwin.so
0x10bf23000 - 0x10bf26fff +_typing.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_typing.cpython-311-darwin.so
0x10c133000 - 0x10c13afff +zlib.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/zlib.cpython-311-darwin.so
0x10c14b000 - 0x10c14efff +_bz2.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_bz2.cpython-311-darwin.so
0x10c15b000 - 0x10c18afff +_lzma.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_lzma.cpython-311-darwin.so
0x10c19f000 - 0x10c1a2fff +_bisect.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_bisect.cpython-311-darwin.so
0x10c1af000 - 0x10c1b2fff +_random.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_random.cpython-311-darwin.so
0x10c1bf000 - 0x10c1c6fff +_sha512.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_sha512.cpython-311-darwin.so
0x10c1d3000 - 0x10c1dafff +binascii.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/binascii.cpython-311-darwin.so
0x10c1e7000 - 0x10c1eefff +_struct.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_struct.cpython-311-darwin.so
0x10c1ff000 - 0x10c202fff +fcntl.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/fcntl.cpython-311-darwin.so
0x10c20f000 - 0x10c212fff +_posixsubprocess.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_posixsubprocess.cpython-311-darwin.so
0x10c21f000 - 0x10c226fff +select.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/select.cpython-311-darwin.so
0x10c333000 - 0x10c336fff +_arrays.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/arrays/_arrays.cpython-311-darwin.so
0x10c343000 - 0x10c456fff +libarrays.dylib (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/arrays/lib/libarrays.dylib
0x10c583000 - 0x10ca3afff +_multiarray_umath.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_umath.cpython-311-darwin.so
0x10caf3000 - 0x110a46fff +libopenblas64_.0.dylib (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libopenblas64_.0.dylib
0x110d23000 - 0x111365fff +libgfortran.5.dylib (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libgfortran.5.dylib
0x1113a0000 - 0x1113edfff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x1113f7000 - 0x111407fff +libgcc_s.1.1.dylib (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libgcc_s.1.1.dylib
0x117519000 - 0x117534fff +_pickle.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_pickle.cpython-311-darwin.so
0x117549000 - 0x11754cfff +_contextvars.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_contextvars.cpython-311-darwin.so
0x117559000 - 0x11756cfff +_multiarray_tests.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_tests.cpython-311-darwin.so
0x11767d000 - 0x117690fff +_ctypes.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_ctypes.cpython-311-darwin.so
0x1176a9000 - 0x1176d0fff +_umath_linalg.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/linalg/_umath_linalg.cpython-311-darwin.so
0x1177e1000 - 0x1177f4fff +_pocketfft_internal.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/fft/_pocketfft_internal.cpython-311-darwin.so
0x117801000 - 0x1178a0fff +mtrand.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/mtrand.cpython-311-darwin.so
0x1178bd000 - 0x1178e4fff +bit_generator.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/bit_generator.cpython-311-darwin.so
0x1178f9000 - 0x117928fff +_common.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_common.cpython-311-darwin.so
0x117a3d000 - 0x117a44fff +_hashlib.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_hashlib.cpython-311-darwin.so
0x117a55000 - 0x117c7cfff +libcrypto.1.1.dylib (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/libcrypto.1.1.dylib
0x117d1d000 - 0x117d24fff +_blake2.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_blake2.cpython-311-darwin.so
0x117d31000 - 0x117d80fff +_bounded_integers.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_bounded_integers.cpython-311-darwin.so
0x117d9d000 - 0x117db0fff +_mt19937.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_mt19937.cpython-311-darwin.so
0x117dc1000 - 0x117dd0fff +_philox.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_philox.cpython-311-darwin.so
0x117de1000 - 0x117df4fff +_pcg64.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_pcg64.cpython-311-darwin.so
0x117e05000 - 0x117e10fff +_sfc64.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_sfc64.cpython-311-darwin.so
0x117e21000 - 0x117edcfff +_generator.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_generator.cpython-311-darwin.so
0x117efd000 - 0x117f00fff +_opcode.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_opcode.cpython-311-darwin.so
0x11800d000 - 0x118030fff +_geometry.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/geometry/_geometry.cpython-311-darwin.so
0x118049000 - 0x118050fff +_json.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_json.cpython-311-darwin.so
0x11835d000 - 0x118500fff +QtCore.abi3.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtCore.abi3.so
0x1186e9000 - 0x118c08fff +QtCore (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtCore.framework/Versions/A/QtCore
0x118d32000 - 0x118d49fff com.apple.security.csparser (3.0 - 59754.100.106) /System/Library/Frameworks/Security.framework/PlugIns/csparser.bundle/Contents/MacOS/csparser
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0x7fff379ba000 - 0x7fff37c04fff com.apple.CMCapture (1.0 - 81.37) /System/Library/PrivateFrameworks/CMCapture.framework/Versions/A/CMCapture
0x7fff37fa0000 - 0x7fff3804dfff com.apple.accounts.AccountsDaemon (113 - 113) /System/Library/PrivateFrameworks/AccountsDaemon.framework/Versions/A/AccountsDaemon
0x7fff3804e000 - 0x7fff38050fff com.apple.OAuth (25 - 25) /System/Library/PrivateFrameworks/OAuth.framework/Versions/A/OAuth
0x7fff38600000 - 0x7fff3860ffff com.apple.HID (1.0 - 1) /System/Library/PrivateFrameworks/HID.framework/Versions/A/HID
0x7fff38610000 - 0x7fff38737fff com.apple.QuickLookUIFramework (5.0 - 928.3) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuickLookUI.framework/Versions/A/QuickLookUI
0x7fff38b0a000 - 0x7fff38b90fff com.apple.coredav (1.0.1 - 889) /System/Library/PrivateFrameworks/CoreDAV.framework/Versions/A/CoreDAV
0x7fff38b91000 - 0x7fff38be7fff com.apple.ExchangeWebServices (8.0 - 814.80.3) /System/Library/PrivateFrameworks/ExchangeWebServices.framework/Versions/A/ExchangeWebServices
0x7fff38be8000 - 0x7fff38c27fff com.apple.MediaServices (1.0 - 1) /System/Library/PrivateFrameworks/MediaServices.framework/Versions/A/MediaServices
0x7fff38d1f000 - 0x7fff38d1ffff com.apple.marco (10.0 - 1000) /System/Library/PrivateFrameworks/Marco.framework/Versions/A/Marco
0x7fff38f05000 - 0x7fff38f3dfff com.apple.contacts.ContactsAutocomplete (1.0 - 1152.4) /System/Library/PrivateFrameworks/ContactsAutocomplete.framework/Versions/A/ContactsAutocomplete
0x7fff38f3e000 - 0x7fff38f4afff com.apple.KerberosHelper (4.0 - 1.0) /System/Library/PrivateFrameworks/KerberosHelper.framework/Versions/A/KerberosHelper
0x7fff38f4b000 - 0x7fff38f8efff com.apple.ResponseKit (1.0 - 165.2) /System/Library/PrivateFrameworks/ResponseKit.framework/Versions/A/ResponseKit
0x7fff38f8f000 - 0x7fff38faefff com.apple.proactive.support.ProactiveEventTracker (1.0 - 294.6) /System/Library/PrivateFrameworks/ProactiveEventTracker.framework/Versions/A/ProactiveEventTracker
0x7fff393d2000 - 0x7fff393d2fff com.apple.PhoneNumbers (1.0 - 1) /System/Library/PrivateFrameworks/PhoneNumbers.framework/Versions/A/PhoneNumbers
0x7fff393d3000 - 0x7fff393dafff com.apple.URLFormatting (146 - 146.22) /System/Library/PrivateFrameworks/URLFormatting.framework/Versions/A/URLFormatting
0x7fff393db000 - 0x7fff393e9fff com.apple.accessibility.AXCoreUtilities (1.0 - 1) /System/Library/PrivateFrameworks/AXCoreUtilities.framework/Versions/A/AXCoreUtilities
0x7fff393ea000 - 0x7fff39401fff libAccessibility.dylib (2885.34) /usr/lib/libAccessibility.dylib
0x7fff3be2d000 - 0x7fff3be4ffff com.apple.quicklook.QuickLookSupport (1.0 - 135.4) /System/Library/PrivateFrameworks/QuickLookSupport.framework/Versions/A/QuickLookSupport
0x7fff3be50000 - 0x7fff3bee7fff com.apple.AirPlaySync (1.0 - 2770.32.4.7) /System/Library/PrivateFrameworks/AirPlaySync.framework/Versions/A/AirPlaySync
0x7fff3ca77000 - 0x7fff3cafafff com.apple.CorePDF (4.0 - 529) /System/Library/PrivateFrameworks/CorePDF.framework/Versions/A/CorePDF
0x7fff3cafb000 - 0x7fff3cafefff com.apple.print.framework.Print (15 - 271) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
0x7fff3caff000 - 0x7fff3cb02fff com.apple.Carbon (160 - 164) /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x7fff3cbfb000 - 0x7fff3cbfbfff com.apple.avfoundation (2.0 - 2010.31) /System/Library/Frameworks/AVFoundation.framework/Versions/A/AVFoundation
0x7fff3cdb5000 - 0x7fff3cdd4fff com.apple.private.SystemPolicy (1.0 - 1) /System/Library/PrivateFrameworks/SystemPolicy.framework/Versions/A/SystemPolicy
0x7fff3cf21000 - 0x7fff3cf77fff com.apple.AccessibilitySharedSupport (1.0 - 1) /System/Library/PrivateFrameworks/AccessibilitySharedSupport.framework/Versions/A/AccessibilitySharedSupport
0x7fff3cf78000 - 0x7fff3cf95fff com.apple.sidecar-core (1.0 - 231) /System/Library/PrivateFrameworks/SidecarCore.framework/Versions/A/SidecarCore
0x7fff3cf96000 - 0x7fff3cf99fff com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem
0x7fff3d3b1000 - 0x7fff3d3b7fff com.apple.FeatureFlagsSupport (1.0 - 28.60.1) /System/Library/PrivateFrameworks/FeatureFlagsSupport.framework/Versions/A/FeatureFlagsSupport
0x7fff3d52a000 - 0x7fff3d541fff com.apple.SafariServices.framework (16611 - 16611.1.21.161.6) /System/Library/Frameworks/SafariServices.framework/Versions/A/SafariServices
0x7fff3d6f0000 - 0x7fff3d6fbfff com.apple.MallocStackLogging (1.0 - 1) /System/Library/PrivateFrameworks/MallocStackLogging.framework/Versions/A/MallocStackLogging
0x7fff3d710000 - 0x7fff3d722fff libmis.dylib (274.100.13) /usr/lib/libmis.dylib
0x7fff3d723000 - 0x7fff3d726fff com.apple.gpusw.GPURawCounter (20.3 - 12.0) /System/Library/PrivateFrameworks/GPURawCounter.framework/Versions/A/GPURawCounter
0x7fff3d73f000 - 0x7fff3d8aefff com.apple.CoreHandwriting (161 - 1.2) /System/Library/PrivateFrameworks/CoreHandwriting.framework/Versions/A/CoreHandwriting
0x7fff3d8af000 - 0x7fff3db0afff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x7fff3db0b000 - 0x7fff3dc21fff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff3dc22000 - 0x7fff3dc33fff com.apple.sidecar-ui (1.0 - 231) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff3e256000 - 0x7fff3e2b8fff com.apple.ImageCaptureCore (1711.4.2 - 1711.4.2) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x7fff3e2b9000 - 0x7fff3e2defff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x7fff3e4be000 - 0x7fff3e52afff com.apple.Safari.Core (16611 - 16611.1.21.161.6) /System/Library/PrivateFrameworks/SafariCore.framework/Versions/A/SafariCore
0x7fff3e52b000 - 0x7fff3e68afff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer
0x7fff3e68b000 - 0x7fff3e969fff com.apple.iTunesCloud (1.0 - 1) /System/Library/PrivateFrameworks/iTunesCloud.framework/Versions/A/iTunesCloud
0x7fff3e995000 - 0x7fff3eac1fff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x7fff3eac2000 - 0x7fff3ef62fff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x7fff3ef63000 - 0x7fff3f04bfff com.apple.PDFKit (1.0 - 950.32.1) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x7fff3fd7e000 - 0x7fff3fdfbfff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput
0x7fff40f92000 - 0x7fff40f95fff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff413ba000 - 0x7fff413d8fff libCGInterfaces.dylib (544.4) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff42a58000 - 0x7fff437b8fff libfaceCore.dylib (4.2.6) /System/Library/Frameworks/Vision.framework/libfaceCore.dylib
0x7fff437b9000 - 0x7fff438ccfff com.apple.TextRecognition (1.0 - 157) /System/Library/PrivateFrameworks/TextRecognition.framework/Versions/A/TextRecognition
0x7fff438cd000 - 0x7fff438e5fff com.apple.Futhark (1.0 - 1) /System/Library/PrivateFrameworks/Futhark.framework/Versions/A/Futhark
0x7fff438e6000 - 0x7fff43945fff com.apple.DifferentialPrivacy (1.0 - 1) /System/Library/PrivateFrameworks/DifferentialPrivacy.framework/Versions/A/DifferentialPrivacy
0x7fff43946000 - 0x7fff4395ffff com.apple.SafariFoundation (16611 - 16611.1.21.161.6) /System/Library/PrivateFrameworks/SafariFoundation.framework/Versions/A/SafariFoundation
0x7fff43960000 - 0x7fff43966fff com.apple.SafariPlatformSupport.framework (16611 - ???) /System/Library/PrivateFrameworks/SafariPlatformSupport.framework/Versions/A/SafariPlatformSupport
0x7fff43967000 - 0x7fff43bdafff com.apple.RawCamera.bundle (9.10.0 - 1440) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff44443000 - 0x7fff44447fff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x7fff45dbf000 - 0x7fff45dc2fff libpmenergy.dylib (227.100.2) /usr/lib/libpmenergy.dylib
0x7fff464c7000 - 0x7fff464d2fff libGPUSupportMercury.dylib (18.5.8) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib
0x7fff47afe000 - 0x7fff47b3dfff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff4838a000 - 0x7fff483a5fff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff5172d000 - 0x7fff5175afff com.apple.HelpData (2.3 - 201) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x7fff5175b000 - 0x7fff51775fff com.apple.shortcut (2.16 - 117) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff51776000 - 0x7fff51815fff com.apple.Symbolication (12.5 - 64544.66.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff519e1000 - 0x7fff519e4fff libpmsample.dylib (227.100.2) /usr/lib/libpmsample.dylib
0x7fff5408b000 - 0x7fff540c1fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff556bb000 - 0x7fff556befff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff5cfdf000 - 0x7fff5cff1fff libTraditionalChineseConverter.dylib (90) /System/Library/CoreServices/Encodings/libTraditionalChineseConverter.dylib
0x7fff63f4d000 - 0x7fff64f3cfff com.apple.driver.AppleIntelICLGraphicsGLDriver (16.2.16 - 16.0.2) /System/Library/Extensions/AppleIntelICLGraphicsGLDriver.bundle/Contents/MacOS/AppleIntelICLGraphicsGLDriver
0x7fff653f5000 - 0x7fff65926fff com.apple.driver.AppleIntelICLGraphicsMTLDriver (16.2.16 - 16.0.2) /System/Library/Extensions/AppleIntelICLGraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelICLGraphicsMTLDriver
0x7fff69784000 - 0x7fff69788fff libmetal_timestamp.dylib (31001.184.2) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6bbcf000 - 0x7fff6bbd5fff libCoreFSCache.dylib (200.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6bbd6000 - 0x7fff6bbdafff libCoreVMClient.dylib (200.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6bbdb000 - 0x7fff6bbeafff com.apple.opengl (18.5.8 - 18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6bbeb000 - 0x7fff6bbedfff libCVMSPluginSupport.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6bbee000 - 0x7fff6bbf6fff libGFXShared.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6bbf7000 - 0x7fff6bc2afff libGLImage.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6bc2b000 - 0x7fff6bc67fff libGLU.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6bc68000 - 0x7fff6bdfbfff libGLProgrammability.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bdfc000 - 0x7fff6be06fff libGL.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6be07000 - 0x7fff6bf84fff GLEngine (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6bf85000 - 0x7fff6bfadfff GLRendererFloat (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d246000 - 0x7fff6d29efff com.apple.opencl (4.5 - 4.5) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e344000 - 0x7fff6e34bfff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e34c000 - 0x7fff6e433fff com.apple.audio.AVFAudio (1.0 - 477.84) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6f9b1000 - 0x7fff6f9c3fff com.apple.CMImaging (1.0 - 81.37) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73c4b000 - 0x7fff73c56fff com.apple.SymptomAnalytics (1.0 - 1431.100.22) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73e6c000 - 0x7fff73e84fff com.apple.SymptomPresentationFeed (1.0 - 1431.100.22) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff779f0000 - 0x7fff779f7fff libRosetta.dylib (203.42) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=1.3G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.3G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 1
CG backing stores 7560K 12
CG image 444K 30
CoreAnimation 244K 21
CoreGraphics 16K 3
CoreUI image data 3668K 29
Foundation 52K 2
IOKit 15.5M 2
Kernel Alloc Once 8K 1
MALLOC 924.3M 1105
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
Mach message 16K 2
OpenGL GLSL 384K 4
STACK GUARD 152K 38
Stack 185.3M 39
Stack Guard 56.0M 1
VM_ALLOCATE 215.2M 266
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 30.4M 651
__DATA_CONST 36.6M 366
__DATA_DIRTY 1729K 222
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 530.2M 266
__OBJC_RO 70.1M 1
__OBJC_RW 2480K 2
__TEXT 703.2M 639
__UNICODE 588K 1
mapped file 593.1M 64
shared memory 3040K 33
=========== ======= =======
TOTAL 3.3G 3815
TOTAL, minus reserved VM space 3.3G 3815
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 1tyx fromDatabase pdb format mmcif
1tyx title:
Title of tailspike-protein [more info...]
Chain information for 1tyx #1
---
Chain | Description | UniProt
A | TAILSPIKE PROTEIN | TSPE_BPP22 113-666
Non-standard residues in 1tyx #1
---
ABE — alpha-D-Abequopyranose (alpha-D-Abequose; 3,6-dideoxy-alpha-D-xylo-
hexopyranose; 3,6-dideoxy-alpha-D-gulopyranose; 3,6-dideoxy-alpha-D-
galactopyranose; 3-deoxy-alpha-D-fucopyranose; D-Abequose; Abequose)
GLA — alpha-D-galactopyranose (alpha-D-galactose; D-galactose; galactose; α
D-GALACTOSE)
MAN — alpha-D-mannopyranose (alpha-D-mannose; D-mannose; mannose)
RAM — alpha-L-rhamnopyranose (alpha-L-rhamnose; 6-deoxy-alpha-L-mannopyranose;
L-rhamnose; rhamnose)
1tyx mmCIF Assemblies
---
1| author_and_software_defined_assembly
> log metadata #1
Metadata for 1tyx #1
---
Title | Title of tailspike-protein
Citations | Steinbacher, S., Baxa, U., Miller, S., Weintraub, A., Seckler, R., Huber, R. (1996). Crystal structure of phage P22 tailspike protein complexed with Salmonella sp. O-antigen receptors. Proc.Natl.Acad.Sci.USA, 93, 10584-10588. PMID: 8855221. DOI: 10.1073/pnas.93.20.10584
Baxa, U., Steinbacher, S., Miller, S., Weintraub, A., Huber, R., Seckler, R.
(1996). Interactions of Phage P22 Tails with Their Cellular Receptor,
Salmonella O-Antigen Polysaccharide. Biophys.J., 71, 2040
Steinbacher, S., Seckler, R., Miller, S., Steipe, B., Huber, R., Reinemer, P.
(1994). Crystal Structure of P22 Tailspike Protein: Interdigitated Subunits in
a Thermostable Trimer. Science, 265, 383
Non-standard residues | ABE — alpha-D-Abequopyranose (alpha-D-Abequose; 3,6-dideoxy-alpha-D-xylo-hexopyranose; 3,6-dideoxy-alpha-D-gulopyranose; 3,6-dideoxy-alpha-D-galactopyranose; 3-deoxy-alpha-D-fucopyranose; D-Abequose; Abequose)
GLA — alpha-D-galactopyranose (alpha-D-galactose; D-galactose; galactose; α
D-GALACTOSE)
MAN — alpha-D-mannopyranose (alpha-D-mannose; D-mannose; mannose)
RAM — alpha-L-rhamnopyranose (alpha-L-rhamnose; 6-deoxy-alpha-L-mannopyranose;
L-rhamnose; rhamnose)
Gene source | Enterobacteria phage P22
Experimental method | X-ray diffraction
Resolution | 1.8Å
> select /A:113-666
4115 atoms, 4198 bonds, 2 pseudobonds, 543 residues, 2 models selected
> select :ABE
18 atoms, 18 bonds, 2 residues, 1 model selected
> select :GLA
22 atoms, 22 bonds, 2 residues, 1 model selected
> select :MAN
22 atoms, 22 bonds, 2 residues, 1 model selected
> select :RAM
21 atoms, 21 bonds, 2 residues, 1 model selected
> sym #1 assembly 1
Made 3 copies for 1tyx assembly 1
> view
> select /A:113-666
16460 atoms, 16792 bonds, 8 pseudobonds, 2172 residues, 8 models selected
> select /A:113-666
16460 atoms, 16792 bonds, 8 pseudobonds, 2172 residues, 8 models selected
> sym #1 assembly 1
Made 3 copies for 1tyx assembly 1
> view
> undo
> select add #1
4407 atoms, 4288 bonds, 2 pseudobonds, 760 residues, 2 models selected
> select subtract #1
Nothing selected
> select add #2.1
4407 atoms, 4288 bonds, 2 pseudobonds, 760 residues, 2 models selected
> select subtract #2.1
Nothing selected
> hide #!2 models
> hide #!3 models
> show #!1 models
> hide #!1 models
> show #!3 models
> show #!2 models
> select add #2
13221 atoms, 12864 bonds, 6 pseudobonds, 2280 residues, 7 models selected
> select add #3
26442 atoms, 25728 bonds, 12 pseudobonds, 4560 residues, 14 models selected
> delete atoms (#!2.1-3#!3.1-3 & sel)
> delete bonds (#!2.1-3#!3.1-3 & sel)
> select subtract #2
1 model selected
> select subtract #3
Nothing selected
> select add #1
4407 atoms, 4288 bonds, 2 pseudobonds, 760 residues, 2 models selected
> show #!1 models
> hide #3 models
> hide #2 models
> select subtract #1
Nothing selected
> select :ABE
18 atoms, 18 bonds, 2 residues, 1 model selected
> view sel
> ui tool show "Side View"
> view
> view orient
> undo
> set bgColor white
> set bgColor gray
> set bgColor black
> set bgColor white
> lighting simple
> lighting soft
> lighting simple
> lighting soft
> lighting simple
> lighting full
> lighting flat
> lighting simple
> lighting soft
> lighting flat
> lighting full
> lighting soft
> lighting simple
> select /A:113-666
4115 atoms, 4198 bonds, 2 pseudobonds, 543 residues, 2 models selected
> select /A:113-666
4115 atoms, 4198 bonds, 2 pseudobonds, 543 residues, 2 models selected
> select :ABE
18 atoms, 18 bonds, 2 residues, 1 model selected
> select :GLA
22 atoms, 22 bonds, 2 residues, 1 model selected
> select :MAN
22 atoms, 22 bonds, 2 residues, 1 model selected
> select :RAM
21 atoms, 21 bonds, 2 residues, 1 model selected
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> select /A:113-666
4115 atoms, 4198 bonds, 2 pseudobonds, 543 residues, 2 models selected
> select clear
> select
> /A:124-126,143-146,156-159,166-169,172-174,177-182,189-191,194-196,260-265,271-273,276-278,280-285,291-293,295-300,306-309,320-322,324-328,334-337,348-350,353-355,362-364,380-382,384-387,394-396,427-429,431-434,441-446,449-451,453-456,463-468,471-473,475-478,490-492,497-499,501-503,516-518,522-524,535-537,557-562,574-580,589-595,604-608,635-641,646-652,658-664
1494 atoms, 1477 bonds, 189 residues, 1 model selected
> select /A:399-400
15 atoms, 14 bonds, 2 residues, 1 model selected
> select /A:398-400
20 atoms, 19 bonds, 3 residues, 1 model selected
> select
> /A:124-126,143-146,156-159,166-169,172-174,177-182,189-191,194-196,260-265,271-273,276-278,280-285,291-293,295-300,306-309,320-322,324-328,334-337,348-350,353-355,362-364,380-382,384-387,394-396,427-429,431-434,441-446,449-451,453-456,463-468,471-473,475-478,490-492,497-499,501-503,516-518,522-524,535-537,557-562,574-580,589-595,604-608,635-641,646-652,658-664
1494 atoms, 1477 bonds, 189 residues, 1 model selected
> select /A:508
6 atoms, 5 bonds, 1 residue, 1 model selected
> select /A:504-508
37 atoms, 36 bonds, 5 residues, 1 model selected
> select /A:194
11 atoms, 11 bonds, 1 residue, 1 model selected
> select /A:188-194
52 atoms, 52 bonds, 7 residues, 1 model selected
> select /A:124
6 atoms, 5 bonds, 1 residue, 1 model selected
> select /A:124-126
22 atoms, 21 bonds, 3 residues, 1 model selected
> select /A:114-115
14 atoms, 13 bonds, 2 residues, 1 model selected
> select /A:114-120
54 atoms, 53 bonds, 7 residues, 1 model selected
> select /A:166
7 atoms, 6 bonds, 1 residue, 1 model selected
> select /A:166-169
30 atoms, 29 bonds, 4 residues, 1 model selected
> select /A:552
6 atoms, 5 bonds, 1 residue, 1 model selected
> select /A:547-552
46 atoms, 45 bonds, 6 residues, 1 model selected
> select /A:407-412
50 atoms, 51 bonds, 6 residues, 1 model selected
> select /A:407-412
50 atoms, 51 bonds, 6 residues, 1 model selected
> select /A:423-424
15 atoms, 15 bonds, 2 residues, 1 model selected
> select /A:413-424
100 atoms, 104 bonds, 12 residues, 1 model selected
> select add #1
4407 atoms, 4288 bonds, 2 pseudobonds, 760 residues, 2 models selected
> select subtract #1
Nothing selected
> select add #1
4407 atoms, 4288 bonds, 2 pseudobonds, 760 residues, 2 models selected
> ui tool show "Side View"
> select /A
4324 atoms, 4198 bonds, 2 pseudobonds, 752 residues, 2 models selected
> select ~sel & ##selected
83 atoms, 90 bonds, 8 residues, 1 model selected
> color sel yellow
> undo
> hide sel cartoons
> select clear
> show cartoons
> hide cartoons
> show cartoons
> hide cartoons
> hide atoms
> show atoms
> undo
> hide cartoons
> show atoms
> undo
> show cartoons
> select /A:113-666
4115 atoms, 4198 bonds, 2 pseudobonds, 543 residues, 2 models selected
> style sel sphere
Changed 4115 atom styles
> undo
> show sel surfaces
> coulombic sel
The following heavy (non-hydrogen) atoms are missing, which may result in
inaccurate electrostatics:
/A LEU 666 OXT
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for 1tyx_A SES surface #1.2: minimum, -14.28, mean -1.62,
maximum 11.09
To also show corresponding color key, enter the above coulombic command and
add key true
> mlp sel
Map values for surface "1tyx_A SES surface": minimum -31.36, mean -4.838,
maximum 23.34
To also show corresponding color key, enter the above mlp command and add key
true
> color bfactor sel
4115 atoms, 543 residues, 1 surfaces, atom bfactor range 2 to 62.5
> color sel bynucleotide
> color bfactor sel
4115 atoms, 543 residues, 1 surfaces, atom bfactor range 2 to 62.5
> rainbow sel
> color sel bypolymer
> color sel bychain
> color sel byhetero
> color sel bynucleotide
> color sel bychain
> color sel bypolymer
> color sel bychain
> rainbow sel
> color sel bychain
> mlp sel
Map values for surface "1tyx_A SES surface": minimum -31.36, mean -4.838,
maximum 23.34
To also show corresponding color key, enter the above mlp command and add key
true
> color sel byhetero
> color sel bychain
> select /A:113-666
4115 atoms, 4198 bonds, 2 pseudobonds, 543 residues, 2 models selected
> select /A:113-666
4115 atoms, 4198 bonds, 2 pseudobonds, 543 residues, 2 models selected
> select clear
> select /A:113-666
4115 atoms, 4198 bonds, 2 pseudobonds, 543 residues, 2 models selected
> color (#!1 & sel) cyan
> color (#!1 & sel) cornflower blue
> lighting simple
> lighting soft
> lighting full
> lighting soft
> lighting simple
> lighting soft
> lighting shadows true intensity 0.5
> graphics silhouettes false
> lighting simple
> lighting soft
> lighting full
> lighting soft
> select clear
> lighting soft
> lighting simple
> lighting soft
> lighting simple
> lighting full
> lighting simple
> select clear
> select ::name="ABE"::name="GLA"::name="HOH"::name="MAN"::name="RAM"
292 atoms, 90 bonds, 217 residues, 1 model selected
> color sel orange
> undo
> lighting soft
> undo
> ui tool show "Side View"
> select ::name="ABE"::name="GLA"::name="HOH"::name="MAN"::name="RAM"
292 atoms, 90 bonds, 217 residues, 1 model selected
> color sel yellow
> color sel orange
> color sel byhetero
> color sel lime
> color sel byhetero
> color sel yellow
> color sel byhetero
> lighting simple
> lighting soft
> lighting full
> lighting flat
> lighting full
> lighting simple
> lighting soft
> select clear
> select /A:749@O
1 atom, 1 residue, 1 model selected
> select clear
> select /A:307@CG2
1 atom, 1 residue, 1 model selected
> select /A:307@CG2
1 atom, 1 residue, 1 model selected
> select clear
> select /A:749@O
1 atom, 1 residue, 1 model selected
> select clear
> select /A:749@O
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select /A:787@O
1 atom, 1 residue, 1 model selected
> select /A:359@CB
1 atom, 1 residue, 1 model selected
> select /A:787@O
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select /A:786@O
1 atom, 1 residue, 1 model selected
> hide sel cartoons
> select clear
> select /A:786@O
1 atom, 1 residue, 1 model selected
> hide sel cartoons
> select /A:726@O
1 atom, 1 residue, 1 model selected
> hide sel cartoons
> select clear
> lighting simple
> lighting soft
> hide surfaces
> select /A:726@O
1 atom, 1 residue, 1 model selected
> hide sel cartoons
> select /A:875@O
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select /A:726@O
1 atom, 1 residue, 1 model selected
> hide sel atoms
> hide atoms
> undo
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
7 atoms, 6 bonds, 1 residue, 2 models selected
> hide sel atoms
> select /A:113-666
4115 atoms, 4198 bonds, 2 pseudobonds, 543 residues, 2 models selected
> ui tool show "Color Actions"
> color sel medium turquoise
> color sel turquoise
> color sel cyan
> color sel dark turquoise
> color sel deep sky blue
> select clear
> toolshed show
> ui tool show "Basic Actions"
> ui tool show "Color Actions"
> select /A:441
11 atoms, 11 bonds, 1 residue, 1 model selected
> select up
44 atoms, 44 bonds, 6 residues, 2 models selected
> select up
778 atoms, 792 bonds, 102 residues, 2 models selected
> select up
817 atoms, 829 bonds, 108 residues, 2 models selected
> select up
4115 atoms, 4198 bonds, 543 residues, 2 models selected
> select up
4324 atoms, 4198 bonds, 752 residues, 2 models selected
> select up
4407 atoms, 4288 bonds, 760 residues, 2 models selected
> select up
4407 atoms, 4288 bonds, 2 pseudobonds, 760 residues, 3 models selected
> select up
4407 atoms, 4288 bonds, 2 pseudobonds, 760 residues, 3 models selected
> select up
4407 atoms, 4288 bonds, 2 pseudobonds, 760 residues, 5 models selected
> select down
4407 atoms, 4288 bonds, 2 pseudobonds, 760 residues, 3 models selected
> select down
2 pseudobonds, 2 models selected
> select up
4115 atoms, 2 pseudobonds, 543 residues, 3 models selected
> select down
2 pseudobonds, 1 model selected
> select /A:767@O
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select /A:874@O
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select /A:786@O
1 atom, 1 residue, 1 model selected
> hide sel atoms
Drag select of 3 residues, 1 bonds
> select clear
> hide atoms
> undo
> select clear
> hide atoms
> undo
> select clear
> select down
1 pseudobond, 1 model selected
> select down
1 pseudobond, 1 model selected
> select down
1 pseudobond, 1 model selected
> select down
1 pseudobond, 1 model selected
> select down
1 pseudobond, 1 model selected
> select up
2 pseudobonds, 1 model selected
> select down
1 pseudobond, 1 model selected
> select down
1 pseudobond, 1 model selected
> select up
2 pseudobonds, 1 model selected
> select up
4115 atoms, 2 pseudobonds, 543 residues, 3 models selected
> select down
2 pseudobonds, 1 model selected
> select down
1 pseudobond, 1 model selected
> select down
1 pseudobond, 1 model selected
> select down
1 pseudobond, 1 model selected
> hide atoms
> undo
> hide #1.1 models
> ui tool show "Side View"
> select clear
> select /A:309@OE2
1 atom, 1 residue, 1 model selected
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> hide sel atoms
> undo
> select up
7 atoms, 6 bonds, 1 residue, 2 models selected
> hide sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 2 models selected
> hide sel atoms
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> hide sel atoms
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 2 models selected
> hide sel atoms
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
11 atoms, 10 bonds, 1 residue, 2 models selected
> hide sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 2 models selected
> hide sel atoms
> select clear
> select /A:359@CD
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 2 models selected
> hide sel atoms
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> hide sel atoms
> undo
> select up
14 atoms, 15 bonds, 1 residue, 2 models selected
> hide sel atoms
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 2 models selected
> hide sel atoms
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> hide sel atoms
> undo
> select up
8 atoms, 7 bonds, 1 residue, 2 models selected
> hide sel atoms
> select clear
> select /A:113-666
4115 atoms, 4198 bonds, 2 pseudobonds, 543 residues, 2 models selected
> ui tool show "Surface Color"
> toolshed show
> cartoon style (#!1 & sel) xsection rectangle modeHelix default
> undo
> select clear
> select /A:113-666
4115 atoms, 4198 bonds, 2 pseudobonds, 543 residues, 2 models selected
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-16.2.16
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine
OpenGL vendor: Intel Inc.
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,2
Processor Name: Quad-Core Intel Core i7
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 512 KB
L3 Cache: 8 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 1554.120.19.0.0 (iBridge: 18.16.14663.0.0,0)
Software:
System Software Overview:
System Version: macOS 11.3.1 (20E241)
Kernel Version: Darwin 20.4.0
Time since boot: 1 day 22:19
Graphics/Displays:
Intel Iris Plus Graphics:
Chipset Model: Intel Iris Plus Graphics
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x8a53
Revision ID: 0x0007
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL U2720Q:
Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: FQT7W13
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: Yes
Connection Type: Thunderbolt/DisplayPort
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 15 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash moving window between displays |
comment:2 by , 15 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
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Mac Qt 6.6 crash in _NSViewHierarchyDidChangeBackingProperties. Probably an external display was connected or disconnected.