mlp: No module named 'chimerax.core.commands.surface'

[beard2@…]

The following bug report has been submitted:
Platform:        Darwin-17.7.0-x86_64-i386-64bit
ChimeraX Version: 0.8 (2018-09-20)
Description
ran mlp command

Log:
UCSF ChimeraX version: 0.8 (2018-09-20)  
How to cite UCSF ChimeraX  

open 1bxw ↵

Summary of feedback from opening 1bxw fetched from pdb  
---  
notes | Fetching compressed mmCIF 1bxw from
http://files.rcsb.org/download/1bxw.cif  
Fetching CCD C8E from http://ligand-expo.rcsb.org/reports/C/C8E/C8E.cif  
  
1bxw title:  
Outer membrane protein A (OMPA) transmembrane domain [more info...]  
  
Chain information for 1bxw #1  
---  
Chain | Description  
A | protein (outer membrane protein A)  
  
  

mlp ↵

Traceback (most recent call last):  
  File
"/Users/beard2/Molecular/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/cmd_line/tool.py", line 205, in execute  
    cmd.run(cmd_text)  
  File
"/Users/beard2/Molecular/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/core/commands/cli.py", line 2561, in run  
    result = ci.function(session, **kw_args)  
  File
"/Users/beard2/Molecular/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/mlp/mlp.py", line 55, in mlp  
    from chimerax.core.commands.surface import surface  
ModuleNotFoundError: No module named 'chimerax.core.commands.surface'  
  

ModuleNotFoundError: No module named 'chimerax.core.commands.surface'  
  
File
"/Users/beard2/Molecular/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/mlp/mlp.py", line 55, in mlp  
from chimerax.core.commands.surface import surface  
  
See log for complete Python traceback.  
  

surface ↵

mlp ↵

Traceback (most recent call last):  
  File
"/Users/beard2/Molecular/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/cmd_line/tool.py", line 205, in execute  
    cmd.run(cmd_text)  
  File
"/Users/beard2/Molecular/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/core/commands/cli.py", line 2561, in run  
    result = ci.function(session, **kw_args)  
  File
"/Users/beard2/Molecular/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/mlp/mlp.py", line 55, in mlp  
    from chimerax.core.commands.surface import surface  
ModuleNotFoundError: No module named 'chimerax.core.commands.surface'  
  

ModuleNotFoundError: No module named 'chimerax.core.commands.surface'  
  
File
"/Users/beard2/Molecular/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/mlp/mlp.py", line 55, in mlp  
from chimerax.core.commands.surface import surface  
  
See log for complete Python traceback.  
  

close ↵

open 1bxw format mmCIF fromDatabase pdb ↵

1bxw title:  
Outer membrane protein A (OMPA) transmembrane domain [more info...]  
  
Chain information for 1bxw #1  
---  
Chain | Description  
A | protein (outer membrane protein A)  
  
  

mlp ↵

Traceback (most recent call last):  
  File
"/Users/beard2/Molecular/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/cmd_line/tool.py", line 205, in execute  
    cmd.run(cmd_text)  
  File
"/Users/beard2/Molecular/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/core/commands/cli.py", line 2561, in run  
    result = ci.function(session, **kw_args)  
  File
"/Users/beard2/Molecular/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/mlp/mlp.py", line 55, in mlp  
    from chimerax.core.commands.surface import surface  
ModuleNotFoundError: No module named 'chimerax.core.commands.surface'  
  

ModuleNotFoundError: No module named 'chimerax.core.commands.surface'  
  
File
"/Users/beard2/Molecular/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/mlp/mlp.py", line 55, in mlp  
from chimerax.core.commands.surface import surface  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 ATI-1.68.20
OpenGL renderer: AMD Radeon Pro 575 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

[Eric Pettersen]

Hi Bill,

Thanks for this problem. It was fixed on October 4th, so if you get a current version then you won't run into this problem anymore. Sorry for the inconvenience.

--Eric

Eric Pettersen
UCSF Computer Graphics Lab