Unable to save "NucleotideState"

[Eric Pettersen]

The following bug report has been submitted:
Platform:        Darwin-17.7.0-x86_64-i386-64bit
ChimeraX Version: 0.7 (2018-08-01)
Description
Rsstore attached session, then save it as a session.  Yields:

Unable to save "NucleotideState". Session might not restore properly.

Log:
UCSF ChimeraX version: 0.7 (2018-08-01)  
OpenGL version: 4.1 NVIDIA-10.32.0 355.11.10.10.40.102  
OpenGL renderer: NVIDIA GeForce GTX 675MX OpenGL Engine  
OpenGL vendor: NVIDIA Corporation  
How to cite UCSF ChimeraX  

open 5eev format mmCIF fromDatabase pdb

Summary of feedback from opening 5eev fetched from pdb  
---  
notes | Used PDBx fixed column width tables to speed up reading mmCIF file  
Used PDBx keywords to speed up reading mmCIF file  
  
Chain information for 5eev #1  
---  
Chain | Description  
A B C D E F G H I J K L M N O P Q R S T U V | Transcription attenuation
protein MtrB  
W | (gaguu)10GAG 53-nucleotide RNA  
  
5eev mmCIF Assemblies | 1| author_and_software_defined_assembly | 2|
author_and_software_defined_assembly  

5eev citation:    Bury, C.S., McGeehan, J.E., Antson, A.A., Carmichael, I.,
Gerstel, M., Shevtsov, M.B., Garman, E.F. (2016). RNA protects a nucleoprotein
complex against radiation damage. Acta Crystallogr D Struct Biol, 72, 648-657.
PMID: 27139628. DOI: 10.1107/S2059798316003351  
Opened mmCIF data containing 13830 atoms and 13373 bonds  

save session /Users/pett/rm/bug.cxs

Session file format is not finalized, and thus might not be restorable in
other versions of ChimeraX.  

close

open /Users/pett/rm/bug.cxs format session

opened ChimeraX session  

close

open /Users/pett/rm/bug.cxs format session

opened ChimeraX session  

open /Users/pett/rm/bug.cxs format session

opened ChimeraX session  

color bychain

save ~/rm/bug2.cxs

Session file format is not finalized, and thus might not be restorable in
other versions of ChimeraX.  

Unable to save "NucleotideState". Session might not restore properly.  

close

open 6bna format mmCIF fromDatabase pdb

| Summary of feedback from opening 6bna fetched from pdb  
---  
notes | Used PDBx fixed column width tables to speed up reading mmCIF file  
Used PDBx keywords to speed up reading mmCIF file  
  
Chain information for 6bna #1  
---  
Chain | Description  
A B | DNA (5'-D(*cp*gp*cp*gp*ap*ap*tp*tp*(cbr)P*gp*cp*G)-3')  
  

6bna citation:    Kopka, M.L., Yoon, C., Goodsell, D., Pjura, P., Dickerson,
R.E. (1985). Binding of an antitumor drug to DNA, Netropsin and C-G-C-G-A-A-T-
T-BrC-G-C-G. J.Mol.Biol., 183, 553-563. PMID: 2991536. DOI:
10.1016/0022-2836(85)90171-8  
Opened mmCIF data containing 594 atoms and 578 bonds  

save ~/rm/bug2.cxs

Session file format is not finalized, and thus might not be restorable in
other versions of ChimeraX.  

close

open /Users/pett/rm/bug.cxs format session

opened ChimeraX session  

save ~/rm/bug3.cxs

Session file format is not finalized, and thus might not be restorable in
other versions of ChimeraX.  

Unable to save "NucleotideState". Session might not restore properly.  

toolshed show "Bug Reporter"




OpenGL version: 4.1 NVIDIA-10.32.0 355.11.10.10.40.102
OpenGL renderer: NVIDIA GeForce GTX 675MX OpenGL Engine
OpenGL vendor: NVIDIA Corporation
File attachment: bug2.cxs

bug2.cxs​

[Eric Pettersen]

Added by email2trac

[Greg Couch]

Remove nucleotides state manager when there are no more structures with nucleotide depictions.