Opened 7 years ago

Closed 7 years ago

#1202 closed defect (not a bug)

ChimeraX bug report submission

Reported by: goddard@… Owned by:
Priority: normal Milestone:
Component: Infrastructure Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Darwin-17.7.0-x86_64-i386-64bit
ChimeraX Version: 0.7 (2018-07-21)
Description
Testing bug reporter.

Log:
UCSF ChimeraX version: 0.7 (2018-07-21)  
OpenGL version: 4.1 NVIDIA-10.32.0 355.11.10.10.40.102  
OpenGL renderer: NVIDIA GeForce GTX 680MX OpenGL Engine  
OpenGL vendor: NVIDIA Corporation  
How to cite UCSF ChimeraX  

open 1086 fromDatabase emdb

Opened emd_1086.map, grid size 256,256,256, pixel 3.93, shown at level 4.09,
step 1, values float32  
not cam only change  

vseries play #1

Traceback (most recent call last):  
  File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/cmd_line/tool.py", line 205, in execute  
    cmd.run(cmd_text)  
  File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/core/commands/cli.py", line 2561, in run  
    result = ci.function(session, **kw_args)  
  File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/map/series/vseries_command.py", line 106, in vseries_play  
    rendering_cache_size = cache_frames)  
  File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/map/series/play.py", line 30, in __init__  
    self.time_range = r = (0, len(series[0].maps)-1, 1) if range is None else
range  
IndexError: list index out of range  
  

IndexError: list index out of range  
  
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/map/series/play.py", line 30, in __init__  
self.time_range = r = (0, len(series[0].maps)-1, 1) if range is None else
range  
  
See log for complete Python traceback.  
  
If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
describe what you were doing and include a copy of the contents of the log.
Don't include any data you wish to remain private since a publicly viewable
bug report will be created.  

vseries play #1

Exception ignored in: <bound method Play_Series.__del__ of
<chimerax.map.series.play.Play_Series object at 0x11ff37f60>>  
Traceback (most recent call last):  
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/map/series/play.py", line 59, in __del__  
h = self._model_close_handler  
AttributeError: 'Play_Series' object has no attribute '_model_close_handler'  
Traceback (most recent call last):  
  File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/cmd_line/tool.py", line 205, in execute  
    cmd.run(cmd_text)  
  File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/core/commands/cli.py", line 2561, in run  
    result = ci.function(session, **kw_args)  
  File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/map/series/vseries_command.py", line 106, in vseries_play  
    rendering_cache_size = cache_frames)  
  File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/map/series/play.py", line 30, in __init__  
    self.time_range = r = (0, len(series[0].maps)-1, 1) if range is None else
range  
IndexError: list index out of range  
  

IndexError: list index out of range  
  
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/map/series/play.py", line 30, in __init__  
self.time_range = r = (0, len(series[0].maps)-1, 1) if range is None else
range  
  
See log for complete Python traceback.  
  
If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
describe what you were doing and include a copy of the contents of the log.
Don't include any data you wish to remain private since a publicly viewable
bug report will be created.  




OpenGL version: 4.1 NVIDIA-10.32.0 355.11.10.10.40.102
OpenGL renderer: NVIDIA GeForce GTX 680MX OpenGL Engine
OpenGL vendor: NVIDIA Corporation

Change History (1)

comment:1 by Tom Goddard, 7 years ago

Component: UnassignedInfrastructure
Platform: all
Project: ChimeraX
Resolution: not a bug
Status: newclosed
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