id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 1202 ChimeraX bug report submission goddard@… "{{{ The following bug report has been submitted: Platform: Darwin-17.7.0-x86_64-i386-64bit ChimeraX Version: 0.7 (2018-07-21) Description Testing bug reporter. Log: UCSF ChimeraX version: 0.7 (2018-07-21) OpenGL version: 4.1 NVIDIA-10.32.0 355.11.10.10.40.102 OpenGL renderer: NVIDIA GeForce GTX 680MX OpenGL Engine OpenGL vendor: NVIDIA Corporation How to cite UCSF ChimeraX open 1086 fromDatabase emdb Opened emd_1086.map, grid size 256,256,256, pixel 3.93, shown at level 4.09, step 1, values float32 not cam only change vseries play #1 Traceback (most recent call last):   File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 205, in execute     cmd.run(cmd_text)   File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/commands/cli.py"", line 2561, in run     result = ci.function(session, **kw_args)   File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/map/series/vseries_command.py"", line 106, in vseries_play     rendering_cache_size = cache_frames)   File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/map/series/play.py"", line 30, in __init__     self.time_range = r = (0, len(series[0].maps)-1, 1) if range is None else range IndexError: list index out of range IndexError: list index out of range File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/map/series/play.py"", line 30, in __init__ self.time_range = r = (0, len(series[0].maps)-1, 1) if range is None else range See log for complete Python traceback. If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and describe what you were doing and include a copy of the contents of the log. Don't include any data you wish to remain private since a publicly viewable bug report will be created. vseries play #1 Exception ignored in: > Traceback (most recent call last): File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/map/series/play.py"", line 59, in __del__ h = self._model_close_handler AttributeError: 'Play_Series' object has no attribute '_model_close_handler' Traceback (most recent call last):   File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 205, in execute     cmd.run(cmd_text)   File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/commands/cli.py"", line 2561, in run     result = ci.function(session, **kw_args)   File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/map/series/vseries_command.py"", line 106, in vseries_play     rendering_cache_size = cache_frames)   File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/map/series/play.py"", line 30, in __init__     self.time_range = r = (0, len(series[0].maps)-1, 1) if range is None else range IndexError: list index out of range IndexError: list index out of range File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/map/series/play.py"", line 30, in __init__ self.time_range = r = (0, len(series[0].maps)-1, 1) if range is None else range See log for complete Python traceback. If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and describe what you were doing and include a copy of the contents of the log. Don't include any data you wish to remain private since a publicly viewable bug report will be created. OpenGL version: 4.1 NVIDIA-10.32.0 355.11.10.10.40.102 OpenGL renderer: NVIDIA GeForce GTX 680MX OpenGL Engine OpenGL vendor: NVIDIA Corporation }}} " defect closed normal Infrastructure not a bug all ChimeraX