Crash in make_chains, 1fav

[Tom Goddard]

Open 1fav and use the "surface" command which attempts to create chains causes this crash.

Process: Chimera2 [70400]
Path: /Users/USER/*/Chimera2.app/Contents/MacOS/Chimera2
Identifier: edu.ucsf.cgl.Chimera2
Version: 2.0.0 (2.0.0.0)
Code Type: X86-64 (Native)
Parent Process: bash [58065]
Responsible: Emacs-10.7 [58056]
User ID: 501

Date/Time: 2015-06-23 13:26:27.986 -0700
OS Version: Mac OS X 10.10.3 (14D136)
Report Version: 11
Anonymous UUID: ADCA02F2-9A59-6574-CF8F-380125498A20

Time Awake Since Boot: 4900000 seconds

Crashed Thread: 0 Dispatch queue: com.apple.main-thread

Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000000

VM Regions Near 0:
-->

TEXT 000000010975c000-000000010975d000 [ 4K] r-x/rwx SM=COW /Users/USER/*/Chimera2.app/Contents/bin/Chimera2

Application Specific Information:
Performing @selector(controlAction:) from sender wxNSComboBox 0x7fdb036da3d0

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libatomstruct.dylib 0x000000010b48a096 atomstruct::gapped_match(std::1::vector<char, std::1::allocator<char> > const&, atomstruct::Chain const&, atomstruct::AssocParams const&, unsigned int) + 214
1 libatomstruct.dylib 0x000000010b48a7e8 atomstruct::try_assoc(atomstruct::Sequence const&, atomstruct::Chain const&, atomstruct::AssocParams const&, unsigned int) + 424
2 libatomstruct.dylib 0x000000010b46989e atomstruct::AtomicStructure::make_chains() const + 5310
3 libmolc.dylib 0x000000010b4251cb atomstruct::AtomicStructure::chains() const + 43 (AtomicStructure.h:87)
4 libmolc.dylib 0x000000010b424680 atomstruct::Residue::chain() const + 32 (Residue.h:59)
5 libmolc.dylib 0x000000010b41dc17 atom_in_chain + 71 (molc.cpp:203)
6 _ctypes.so 0x000000010ac83697 ffi_call_unix64 + 79 (darwin64.S:79)
7 _ctypes.so 0x000000010ac83ef8 ffi_call + 872 (x86-ffi64.c:581)
8 _ctypes.so 0x000000010ac7f05b _ctypes_callproc + 891 (callproc.c:811)
9 _ctypes.so 0x000000010ac792f1 PyCFuncPtr_call + 1057 (_ctypes.c:3848)
10 org.python.python 0x000000010976bbc7 PyObject_Call + 103 (abstract.c:2040)
11 org.python.python 0x00000001098215ae PyEval_EvalFrameEx + 20958 (ceval.c:4466)
12 org.python.python 0x000000010981c267 PyEval_EvalCodeEx + 2567 (ceval.c:3588)
13 org.python.python 0x000000010979113d function_call + 381 (funcobject.c:632)
14 org.python.python 0x000000010976bbc7 PyObject_Call + 103 (abstract.c:2040)
15 org.python.python 0x0000000109767367 PyObject_CallFunctionObjArgs + 359 (abstract.c:2332)
16 org.python.python 0x00000001097ae2fe _PyObject_GenericGetAttrWithDict + 142 (object.c:1043)
17 org.python.python 0x000000010981fade PyEval_EvalFrameEx + 14094 (ceval.c:2420)
18 org.python.python 0x000000010981c267 PyEval_EvalCodeEx + 2567 (ceval.c:3588)
19 org.python.python 0x000000010982502c fast_function + 316 (ceval.c:4348)
20 org.python.python 0x0000000109821314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
21 org.python.python 0x000000010981c267 PyEval_EvalCodeEx + 2567 (ceval.c:3588)
22 org.python.python 0x000000010979113d function_call + 381 (funcobject.c:632)
23 org.python.python 0x000000010976bbc7 PyObject_Call + 103 (abstract.c:2040)
24 org.python.python 0x000000010982201f PyEval_EvalFrameEx + 23631 (ceval.c:4561)
25 org.python.python 0x000000010981c267 PyEval_EvalCodeEx + 2567 (ceval.c:3588)
26 org.python.python 0x000000010982502c fast_function + 316 (ceval.c:4348)
27 org.python.python 0x0000000109821314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
28 org.python.python 0x000000010981c267 PyEval_EvalCodeEx + 2567 (ceval.c:3588)
29 org.python.python 0x000000010979113d function_call + 381 (funcobject.c:632)
30 org.python.python 0x000000010976bbc7 PyObject_Call + 103 (abstract.c:2040)
31 org.python.python 0x000000010977f1bd method_call + 141 (classobject.c:347)
32 org.python.python 0x000000010976bbc7 PyObject_Call + 103 (abstract.c:2040)
33 org.python.python 0x000000010982465d PyEval_CallObjectWithKeywords + 93 (ceval.c:4114)
34 _core.so 0x000000010b8c41fc wxPyCallback::EventThunker(wxEvent&) + 284 (sip_corewxEvtHandler.cpp:70)
35 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010c903dba wxEvtHandler::SearchDynamicEventTable(wxEvent&) + 186
36 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010c903b2b wxEvtHandler::ProcessEventLocally(wxEvent&) + 59
37 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010c903a3e wxEvtHandler::ProcessEvent(wxEvent&) + 190
38 _core.so 0x000000010b8177ea sipwxComboBox::ProcessEvent(wxEvent&) + 154 (sip_corewxComboBox.cpp:439)
39 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010c903e5f wxEvtHandler::SafelyProcessEvent(wxEvent&) + 15
40 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010ca06f86 wxNSTextFieldControl::controlAction(NSView*, void*, void*) + 166
41 libsystem_trace.dylib 0x00007fff8a7d5cd7 _os_activity_initiate + 75
42 com.apple.AppKit 0x00007fff8f5b6fb1 -[NSApplication sendAction:to:from:] + 452
43 com.apple.AppKit 0x00007fff8f5cca46 -[NSControl sendAction:to:] + 86
44 com.apple.AppKit 0x00007fff8f6096df -[NSTextField textDidEndEditing:] + 853
45 com.apple.CoreFoundation 0x00007fff81c2345c CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER + 12
46 com.apple.CoreFoundation 0x00007fff81b13634 _CFXNotificationPost + 3140
47 com.apple.Foundation 0x00007fff8c6449d1 -[NSNotificationCenter postNotificationName:object:userInfo:] + 66
48 com.apple.AppKit 0x00007fff8f714947 -[NSTextView(NSPrivate) _giveUpFirstResponder:] + 423
49 com.apple.AppKit 0x00007fff8f790912 -[NSTextView(NSKeyBindingCommands) insertNewline:] + 239
50 com.apple.AppKit 0x00007fff8f65d001 -[NSTextView doCommandBySelector:] + 195
51 com.apple.AppKit 0x00007fff8f65cf11 -[NSTextInputContext(NSInputContext_WithCompletion) doCommandBySelector:completionHandler:] + 118
52 com.apple.AppKit 0x00007fff8f642d33 -[NSKeyBindingManager(NSKeyBindingManager_MultiClients) interpretEventAsCommand:forClient:] + 1899
53 com.apple.AppKit 0x00007fff8fc09292 61-[NSTextInputContext _handleEvent:options:completionHandler:]_block_invoke972 + 335
54 com.apple.AppKit 0x00007fff8f644d0f -[NSTextInputContext(NSInputContext_WithCompletion) hasMarkedTextWithCompletionHandler:] + 76
55 com.apple.AppKit 0x00007fff8f65ce13 61-[NSTextInputContext _handleEvent:options:completionHandler:]_block_invoke_3 + 95
56 com.apple.AppKit 0x00007fff8f655fe8 -[NSTextInputContext tryHandleEvent_HasMarkedText_withDispatchCondition:dispatchWork:continuation:] + 101
57 com.apple.AppKit 0x00007fff8fc09094 61-[NSTextInputContext _handleEvent:options:completionHandler:]_block_invoke960 + 321
58 com.apple.HIToolbox 0x00007fff8dc33d4f TSMProcessRawKeyEventWithOptionsAndCompletionHandler_block_invoke_5 + 70
59 com.apple.HIToolbox 0x00007fff8dc32c45 _ZL23DispatchEventToHandlersP14EventTargetRecP14OpaqueEventRefP14HandlerCallRec_block_invoke + 108
60 com.apple.AppKit 0x00007fff8f645716 55-[NSTextInputContext handleTSMEvent:completionHandler:]_block_invoke174 + 2387
61 com.apple.AppKit 0x00007fff8f644d0f -[NSTextInputContext(NSInputContext_WithCompletion) hasMarkedTextWithCompletionHandler:] + 76
62 com.apple.AppKit 0x00007fff8f644cb0 55-[NSTextInputContext handleTSMEvent:completionHandler:]_block_invoke_2 + 95
63 com.apple.AppKit 0x00007fff8f644c28 -[NSTextInputContext tryHandleTSMEvent_HasMarkedText_withDispatchCondition:dispatchWork:continuation:] + 101
64 com.apple.AppKit 0x00007fff8f6448e5 -[NSTextInputContext handleTSMEvent:completionHandler:] + 3122
65 com.apple.AppKit 0x00007fff8f643c3e _NSTSMEventHandler + 324
66 com.apple.HIToolbox 0x00007fff8dbccb6c DispatchEventToHandlers(EventTargetRec*, OpaqueEventRef*, HandlerCallRec*) + 1260
67 com.apple.HIToolbox 0x00007fff8dbcbfae SendEventToEventTargetInternal(OpaqueEventRef*, OpaqueEventTargetRef*, HandlerCallRec*) + 386
68 com.apple.HIToolbox 0x00007fff8dbcbe22 SendEventToEventTargetWithOptions + 43
69 com.apple.HIToolbox 0x00007fff8dc3026c SendTSMEvent_WithCompletionHandler + 417
70 com.apple.HIToolbox 0x00007fff8dc3076c SendUnicodeTextAEToUnicodeDoc_WithCompletionHandler_block_invoke + 400
71 com.apple.HIToolbox 0x00007fff8dc305a6 SendFilterTextEvent_WithCompletionHandler_block_invoke + 189
72 com.apple.HIToolbox 0x00007fff8dc302c0 SendTSMEvent_WithCompletionHandler + 501
73 com.apple.HIToolbox 0x00007fff8dc3008f SendFilterTextEvent_WithCompletionHandler + 236
74 com.apple.HIToolbox 0x00007fff8dc2fd51 SendUnicodeTextAEToUnicodeDoc_WithCompletionHandler + 295
75 com.apple.HIToolbox 0x00007fff8dc2fae9 utDeliverTSMEvent_WithCompletionHandler_block_invoke_2 + 296
76 com.apple.HIToolbox 0x00007fff8dc2f988 utDeliverTSMEvent_WithCompletionHandler_block_invoke + 437
77 com.apple.HIToolbox 0x00007fff8dc2f7cd TSMKeyEvent_WithCompletionHandler + 701
78 com.apple.HIToolbox 0x00007fff8dc2f4d0 TSMProcessRawKeyEventWithOptionsAndCompletionHandler_block_invoke_4 + 251
79 com.apple.HIToolbox 0x00007fff8dc2f386 TSMProcessRawKeyEventWithOptionsAndCompletionHandler_block_invoke_3 + 330
80 com.apple.HIToolbox 0x00007fff8dc2f112 TSMProcessRawKeyEventWithOptionsAndCompletionHandler_block_invoke_2 + 259
81 com.apple.HIToolbox 0x00007fff8dc2ef25 TSMProcessRawKeyEventWithOptionsAndCompletionHandler_block_invoke + 251
82 com.apple.HIToolbox 0x00007fff8dc1376f TSMProcessRawKeyEventWithOptionsAndCompletionHandler + 3068
83 com.apple.AppKit 0x00007fff8fc08ea6 61-[NSTextInputContext _handleEvent:options:completionHandler:]_block_invoke949 + 131
84 com.apple.AppKit 0x00007fff8f642462 -[NSTextInputContext tryTSMProcessRawKeyEvent:dispatchCondition:setupForDispatch:furtherCondition:dispatchWork:continuation:] + 127
85 com.apple.AppKit 0x00007fff8f642195 -[NSTextInputContext _handleEvent:options:completionHandler:] + 1266
86 com.apple.AppKit 0x00007fff8f641c5e -[NSTextInputContext handleEvent:] + 109
87 com.apple.AppKit 0x00007fff8f641b64 -[NSView interpretKeyEvents:] + 207
88 com.apple.AppKit 0x00007fff8f64197a -[NSTextView keyDown:] + 695
89 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010ca03eee -[wxNSTextFieldEditor keyDown:] + 110
90 com.apple.AppKit 0x00007fff8fb3111b -[NSWindow _reallySendEvent:isDelayedEvent:] + 5452
91 com.apple.AppKit 0x00007fff8f4c2d76 -[NSWindow sendEvent:] + 470
92 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010c9fc7c6 -[wxNSWindow sendEvent:] + 118
93 com.apple.AppKit 0x00007fff8f4bf9b1 -[NSApplication sendEvent:] + 4199
94 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010c911f36 -[wxNSApplication sendEvent:] + 134
95 com.apple.AppKit 0x00007fff8f3e8c68 -[NSApplication run] + 711
96 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010c9f0ec3 wxGUIEventLoop::OSXDoRun() + 115
97 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010c8cec14 wxCFEventLoop::DoRun() + 52
98 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010c7f9b45 wxEventLoopBase::Run() + 165
99 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010c7bdee1 wxAppConsoleBase::MainLoop() + 209
100 _core.so 0x000000010bb40ee5 wxPyApp::MainLoop() + 181 (sip_corewxPyApp.cpp:316)
101 _core.so 0x000000010bb4465d meth_wxPyApp_MainLoop(_object*, _object*) + 205 (sip_corewxPyApp.cpp:1794)
102 org.python.python 0x0000000109821913 PyEval_EvalFrameEx + 21827 (ceval.c:4237)
103 org.python.python 0x0000000109824fc2 fast_function + 210 (ceval.c:4334)
104 org.python.python 0x0000000109821314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
105 org.python.python 0x0000000109824fc2 fast_function + 210 (ceval.c:4334)
106 org.python.python 0x0000000109821314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
107 org.python.python 0x000000010981c267 PyEval_EvalCodeEx + 2567 (ceval.c:3588)
108 org.python.python 0x000000010982502c fast_function + 316 (ceval.c:4348)
109 org.python.python 0x0000000109821314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
110 org.python.python 0x000000010981c267 PyEval_EvalCodeEx + 2567 (ceval.c:3588)
111 org.python.python 0x000000010981b84f PyEval_EvalCode + 63 (ceval.c:775)
112 org.python.python 0x000000010983bab5 PyImport_ImportFrozenModuleObject + 469 (import.c:869)
113 org.python.python 0x000000010983bba2 PyImport_ImportFrozenModule + 34 (import.c:1291)
114 org.python.python 0x000000010983545e Py_FrozenMain + 430 (frozenmain.c:84)
115 libdyld.dylib 0x00007fff8c2f45c9 start + 1

Thread 1:: Dispatch queue: com.apple.libdispatch-manager
0 libsystem_kernel.dylib 0x00007fff87db4232 kevent64 + 10
1 libdispatch.dylib 0x00007fff8750ca6a _dispatch_mgr_thread + 52

Thread 2:
0 libsystem_kernel.dylib 0x00007fff87db394a workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff8cda440d start_wqthread + 13

Thread 3:
0 libsystem_kernel.dylib 0x00007fff87db394a workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff8cda440d start_wqthread + 13

Thread 4:
0 libsystem_kernel.dylib 0x00007fff87db394a workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff8cda440d start_wqthread + 13

Thread 5:
0 libsystem_kernel.dylib 0x00007fff87db394a workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff8cda440d start_wqthread + 13

Thread 6:
0 libsystem_kernel.dylib 0x00007fff87dae4de mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff87dad64f mach_msg + 55
2 com.apple.CoreFoundation 0x00007fff81b75eb4 CFRunLoopServiceMachPort + 212
3 com.apple.CoreFoundation 0x00007fff81b7537b CFRunLoopRun + 1371
4 com.apple.CoreFoundation 0x00007fff81b74bd8 CFRunLoopRunSpecific + 296
5 com.apple.AppKit 0x00007fff8f4bb66b _NSEventThread + 137
6 libsystem_pthread.dylib 0x00007fff8cda6268 _pthread_body + 131
7 libsystem_pthread.dylib 0x00007fff8cda61e5 _pthread_start + 176
8 libsystem_pthread.dylib 0x00007fff8cda441d thread_start + 13

Thread 7:
0 libsystem_kernel.dylib 0x00007fff87db394a workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff8cda440d start_wqthread + 13

Thread 8:
0 libsystem_kernel.dylib 0x00007fff87db394a workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff8cda440d start_wqthread + 13

Thread 9:
0 libsystem_kernel.dylib 0x00007fff87db394a workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff8cda440d start_wqthread + 13

Thread 10:
0 libsystem_kernel.dylib 0x00007fff87db394a workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff8cda440d start_wqthread + 13

Thread 11:: OGL Profiler
0 libsystem_kernel.dylib 0x00007fff87dae4de mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff87dad64f mach_msg + 55
2 com.apple.opengl 0x00007fff8decba79 glcDebugListener + 336
3 libsystem_pthread.dylib 0x00007fff8cda6268 _pthread_body + 131
4 libsystem_pthread.dylib 0x00007fff8cda61e5 _pthread_start + 176
5 libsystem_pthread.dylib 0x00007fff8cda441d thread_start + 13

Thread 0 crashed with X86 Thread State (64-bit):

rax: 0x0000000000000000 rbx: 0x0000000000000001 rcx: 0x00007fdb0801d3bc rdx: 0x000000000000004c
rdi: 0x0000000109a02a00 rsi: 0x00007fdb01dc926c rbp: 0x00007fff5649e680 rsp: 0x00007fff5649e5c0

r8: 0x0000000000000002 r9: 0x00007fdb08000000 r10: 0x0000000000000010 r11: 0x00007fdb08000000

r12: 0x00007fff5649e630 r13: 0xaaaaaaaaaaaaaaab r14: 0x0000000000000000 r15: 0x00007fff5649ec30
rip: 0x000000010b48a096 rfl: 0x0000000000010246 cr2: 0x0000000000000000

Logical CPU: 0
Error Code: 0x00000004
Trap Number: 14

Binary Images:

0x10975c000 - 0x10975cfff +edu.ucsf.cgl.Chimera2 (2.0.0 - 2.0.0.0) <E3F7E2DF-42E7-3DC9-BE43-60FFF29D28D1> /Users/USER/*/Chimera2.app/Contents/MacOS/Chimera2
0x10975f000 - 0x1098eeff7 +org.python.python (3.4.3, [c] 2001-2015 Python Software Foundation. - 3.4.3) <B05216B6-F925-3443-8EDD-E303D42E94A4> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/Python
0x109ce2000 - 0x109ce3fff +_heapq.so (0) <C9A206E4-A401-3B7E-8740-A5BAE8839184> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_heapq.so
0x109d27000 - 0x109d2bff7 +_struct.so (0) <3D108042-4157-3FBA-B318-08C56E80698D> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_struct.so
0x109d94000 - 0x109d96fff +time.so (0) <307B7F4F-645D-3C3D-BFEF-0A5C4F6D390A> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/time.so
0x109d9e000 - 0x109d9ffff +_posixsubprocess.so (0) <EEFDE49E-4BFF-3D97-8F06-8946F073B3C5> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_posixsubprocess.so
0x109da3000 - 0x109da5ff7 +select.so (0) <A4E82A09-6F63-3DA7-A7EB-30597FC4AD82> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/select.so
0x109deb000 - 0x109defff7 +math.so (0) <C7AC55D2-554C-352B-A739-ABAA213F73A7> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/math.so
0x109e36000 - 0x109e39ff7 +binascii.so (0) <F71A29DE-1EBF-3BD4-B753-8BF4C0D4CA31> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/binascii.so
0x109e3d000 - 0x109e4ffff +libz.1.dylib (0) <36544000-4EE5-3392-957E-4D2B77C70B5B> /Users/USER/*/libz.1.dylib
0x109e53000 - 0x109e5eff7 +_datetime.so (0) <9AE5EAA1-6686-32CE-B810-0D97535BD444> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_datetime.so
0x109ea9000 - 0x109ed2fff +pyexpat.so (0) <32E313AD-F9E6-3744-BE64-6687CE52F33A> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/pyexpat.so
0x109f64000 - 0x109f64ff7 +_opcode.so (0) <7BA2D27A-F922-37C5-A54B-3EAAA737E552> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_opcode.so
0x109fa7000 - 0x109fb8ff7 +_pickle.so (0) <BDBBFEF4-FC06-34C6-9F1B-A1ED83285598> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_pickle.so
0x109fc4000 - 0x109fe3fff +_geometry.so (0) <C6332D88-BF72-3390-98CC-5010D340559E> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/chimera/core/geometry/_geometry.so
0x109ff2000 - 0x10a057fff +libarrays.dylib (0) <1ECD7DD6-5919-3A36-8EA0-FD429A931480> /Users/USER/*/libarrays.dylib
0x10a0a5000 - 0x10a0a8fff +zlib.so (0) <3BCE3DFF-1B10-3484-A468-1117E5D76A7E> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/zlib.so
0x10a0ad000 - 0x10a0aeff7 +_bz2.so (0) <BDA4B442-81D6-3254-A1B1-E9A5C1E53E8D> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_bz2.so
0x10a172000 - 0x10a172fff +grp.so (0) <F6F2336F-6A42-319F-93D3-08C0AA807410> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/grp.so
0x10a1b5000 - 0x10a1b5ff7 +_bisect.so (0) <B8DDB08B-CC89-3354-B123-15061E0E63C6> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_bisect.so
0x10a1b8000 - 0x10a1baff7 +_hashlib.so (0) <50041DC6-EDEE-3D6A-BD44-CA0B8D97139C> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_hashlib.so
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0x7fff90690000 - 0x7fff90698ff7 com.apple.icloud.FindMyDevice (1.0 - 1) <9CE67F85-2BA8-3093-97BA-07BF5C04A5D6> /System/Library/PrivateFrameworks/FindMyDevice.framework/Versions/A/FindMyDevice
0x7fff906a2000 - 0x7fff906c1fff com.apple.CoreDuet (1.0 - 1) <36AA9FD5-2685-314D-B364-3FA4688D86BD> /System/Library/PrivateFrameworks/CoreDuet.framework/Versions/A/CoreDuet
0x7fff90718000 - 0x7fff90725ff3 com.apple.ProtocolBuffer (1 - 228.0.1) <3429EB06-9F0E-355F-B9AB-F72879177398> /System/Library/PrivateFrameworks/ProtocolBuffer.framework/Versions/A/ProtocolBuffer
0x7fff90726000 - 0x7fff9072cff7 com.apple.XPCService (2.0 - 1) <AA4A5393-1F5D-3465-A417-0414B95DC052> /System/Library/PrivateFrameworks/XPCService.framework/Versions/A/XPCService
0x7fff90730000 - 0x7fff90734fff libCoreVMClient.dylib (79.1) <201EF6DF-5074-3CB7-A361-398CF957A264> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff907d5000 - 0x7fff907efff7 com.apple.Kerberos (3.0 - 1) <7760E0C2-A222-3709-B2A6-B692D900CEB1> /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos
0x7fff907f0000 - 0x7fff90811fff com.apple.framework.Apple80211 (10.3 - 1030.71.6) <D3862426-2586-3DF7-BA75-9A184FCD74C4> /System/Library/PrivateFrameworks/Apple80211.framework/Versions/A/Apple80211
0x7fff908fd000 - 0x7fff90917ff7 libextension.dylib (55.2) <3BB019CA-199A-36AC-AA22-14B562138545> /usr/lib/libextension.dylib
0x7fff9092e000 - 0x7fff9097fff7 com.apple.AppleVAFramework (5.0.31 - 5.0.31) <FED294D2-13CB-381D-98D0-BDA909AACA32> /System/Library/PrivateFrameworks/AppleVA.framework/Versions/A/AppleVA
0x7fff90b13000 - 0x7fff90c43fff com.apple.UIFoundation (1.0 - 1) <466BDFA8-0B9F-3AB0-989D-F9779422926A> /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation
0x7fff90c44000 - 0x7fff90c53fff com.apple.LangAnalysis (1.7.0 - 1.7.0) <D1E527E4-C561-352F-9457-E8C50232793C> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis
0x7fff90ede000 - 0x7fff90ef3ffb libCGInterfaces.dylib (294.1) <1A6AADE6-09EC-3054-85F9-E6A3607EBA70> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff90ef4000 - 0x7fff90fd8fff libcrypto.0.9.8.dylib (52.20.2) <977DA067-2588-3BF8-A7B2-F08FC6E9088F> /usr/lib/libcrypto.0.9.8.dylib
0x7fff90fd9000 - 0x7fff90fdbff7 libsystem_coreservices.dylib (9) <41B7C578-5A53-31C8-A96F-C73E030B0938> /usr/lib/system/libsystem_coreservices.dylib
0x7fff90fdc000 - 0x7fff913b3fe7 com.apple.CoreAUC (211.1.0 - 211.1.0) <12645629-E065-388E-A6B5-094A240578CE> /System/Library/PrivateFrameworks/CoreAUC.framework/Versions/A/CoreAUC
0x7fff9142e000 - 0x7fff914c2fff com.apple.ink.framework (10.9 - 213) <8E029630-1530-3734-A446-13353F0E7AC5> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
0x7fff9153a000 - 0x7fff91542ff3 com.apple.CoreServices.FSEvents (1210.20.1 - 1210.20.1) <84F79D3E-7B5E-3C93-8479-35794A3F125E> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/FSEvents.framework/Versions/A/FSEvents
0x7fff91543000 - 0x7fff91568ff7 libPng.dylib (1237) <CFBF1344-36AB-3AAE-B2EB-9FC1369F967F> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib
0x7fff91569000 - 0x7fff915dbfff com.apple.framework.IOKit (2.0.2 - 1050.20.2) <09C0518C-90DF-3FC3-96D6-34D35F72C8EF> /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
0x7fff915e1000 - 0x7fff915e9ffb libcopyfile.dylib (118.1.2) <0C68D3A6-ACDD-3EF3-991A-CC82C32AB836> /usr/lib/system/libcopyfile.dylib

External Modification Summary:

Calls made by other processes targeting this process:

task_for_pid: 2
thread_create: 0
thread_set_state: 0

Calls made by this process:

task_for_pid: 0
thread_create: 0
thread_set_state: 0

Calls made by all processes on this machine:

task_for_pid: 7392882
thread_create: 0
thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=295.1M resident=169.7M(57%) swapped_out_or_unallocated=125.4M(43%)
Writable regions: Total=208.3M written=39.0M(19%) resident=76.0M(37%) swapped_out=0K(0%) unallocated=132.2M(63%)

REGION TYPE VIRTUAL
=========== =======
Activity Tracing 2048K
CG backing stores 4280K
CG image 236K
CG raster data 1128K
CG shared images 272K
CoreAnimation 52K
CoreImage 8K
CoreServices 3796K
CoreUI image data 60K
Dispatch continuations 16.0M
Foundation 4K
IOKit 11.5M
Kernel Alloc Once 8K
MALLOC 141.3M
MALLOC (admin) 32K
MALLOC_LARGE (reserved) 384K reserved VM address space (unallocated)
Memory Tag 242 12K
OpenCL 16K
OpenGL GLSL 256K
STACK GUARD 55.7M
Stack 13.5M
VM_ALLOCATE 17.2M
DATA 34.4M
GLSLBUILTINS 2588K
IMAGE 528K
LINKEDIT 86.6M
TEXT 208.5M
UNICODE 552K
mapped file 69.4M
shared memory 68K
=========== =======
TOTAL 670.1M
TOTAL, minus reserved VM space 669.7M

Model: iMac13,2, BootROM IM131.010A.B05, 4 processors, Intel Core i7, 3.4 GHz, 32 GB, SMC 2.11f16
Graphics: NVIDIA GeForce GTX 680MX, NVIDIA GeForce GTX 680MX, PCIe, 2048 MB
Memory Module: BANK 0/DIMM0, 8 GB, DDR3, 1600 MHz, 0x85F7, 0x483634314755363747313630304700000000
Memory Module: BANK 1/DIMM0, 8 GB, DDR3, 1600 MHz, 0x85F7, 0x483634314755363747313630304700000000
Memory Module: BANK 0/DIMM1, 8 GB, DDR3, 1600 MHz, 0x85F7, 0x483634314755363747313630304700000000
Memory Module: BANK 1/DIMM1, 8 GB, DDR3, 1600 MHz, 0x85F7, 0x483634314755363747313630304700000000
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0xF4), Broadcom BCM43xx 1.0 (7.15.166.24.3)
Bluetooth: Version 4.3.4f4 15601, 3 services, 27 devices, 1 incoming serial ports
Network Service: Ethernet, Ethernet, en0
Network Service: Wi-Fi, AirPort, en1
Serial ATA Device: APPLE HDD ST3000DM001, 3 TB
Serial ATA Device: APPLE SSD SM128E, 121.33 GB
USB Device: Kinesis Keyboard Hub
USB Device: Composite Device
USB Device: Keyboard Hub
USB Device: Composite Device
USB Device: Hub
USB Device: Rift DK2
USB Device: Rift DK2
USB Device: FaceTime HD Camera (Built-in)
USB Device: Hub
USB Device: Camera DK2
USB Device: Hub
USB Device: BRCM20702 Hub
USB Device: Bluetooth USB Host Controller
Thunderbolt Bus: iMac, Apple Inc., 23.4

[Tom Goddard]

Same crash with 2bbv.