Crash creating chains, 1a0m

[Tom Goddard]

Calling AtomicStructure.chains() crashes for 1a0m. Tested using the shell.

Process: Chimera2 [95656]
Path: /Users/USER/*/Chimera2.app/Contents/MacOS/Chimera2
Identifier: edu.ucsf.cgl.Chimera2
Version: 2.0.0 (2.0.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: Chimera2 [95656]
User ID: 501

Date/Time: 2015-06-17 17:00:51.215 -0700
OS Version: Mac OS X 10.10.3 (14D136)
Report Version: 11
Anonymous UUID: ADCA02F2-9A59-6574-CF8F-380125498A20

Time Awake Since Boot: 4300000 seconds

Crashed Thread: 0 Dispatch queue: com.apple.main-thread

Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000618000600008

VM Regions Near 0x618000600008:

MALLOC_NANO 0000618000200000-0000618000600000 [ 4096K] rw-/rwx SM=PRV

-->

MALLOC_TINY 00007fef73c00000-00007fef74000000 [ 4096K] rw-/rwx SM=PRV

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libatomstruct.dylib 0x000000010a05d8dd atomstruct::_constrained(std::1::vector<char, std::1::allocator<char> > const&, atomstruct::AssocParams&, std::1::vector<int, std::1::allocator<int> >&, unsigned int) + 781
1 libatomstruct.dylib 0x000000010a05cf3a atomstruct::constrained_match(std::1::vector<char, std::1::allocator<char> > const&, atomstruct::Chain const&, atomstruct::AssocParams const&, unsigned int) + 202
2 libatomstruct.dylib 0x000000010a05f99c atomstruct::try_assoc(atomstruct::Sequence const&, atomstruct::Chain const&, atomstruct::AssocParams const&, unsigned int) + 572
3 libatomstruct.dylib 0x000000010a03ee6e atomstruct::AtomicStructure::make_chains() const + 5310
4 libmolc.dylib 0x0000000109ffa70b atomstruct::AtomicStructure::chains() const + 43 (AtomicStructure.h:87)
5 libmolc.dylib 0x0000000109ff7e1f molecule_num_chains + 63 (molc.cpp:766)
6 _ctypes.so 0x0000000109871697 ffi_call_unix64 + 79 (darwin64.S:79)
7 _ctypes.so 0x0000000109871ef8 ffi_call + 872 (x86-ffi64.c:581)
8 _ctypes.so 0x000000010986d05b _ctypes_callproc + 891 (callproc.c:811)
9 _ctypes.so 0x00000001098672f1 PyCFuncPtr_call + 1057 (_ctypes.c:3848)
10 org.python.python 0x000000010834dbc7 PyObject_Call + 103 (abstract.c:2040)
11 org.python.python 0x00000001084035ae PyEval_EvalFrameEx + 20958 (ceval.c:4466)
12 org.python.python 0x00000001083fe267 PyEval_EvalCodeEx + 2567 (ceval.c:3588)
13 org.python.python 0x000000010837313d function_call + 381 (funcobject.c:632)
14 org.python.python 0x000000010834dbc7 PyObject_Call + 103 (abstract.c:2040)
15 org.python.python 0x0000000108349367 PyObject_CallFunctionObjArgs + 359 (abstract.c:2332)
16 org.python.python 0x00000001083902fe _PyObject_GenericGetAttrWithDict + 142 (object.c:1043)
17 org.python.python 0x00000001083fb15f builtin_getattr + 95 (bltinmodule.c:929)
18 org.python.python 0x0000000108403913 PyEval_EvalFrameEx + 21827 (ceval.c:4237)
19 org.python.python 0x00000001083fe267 PyEval_EvalCodeEx + 2567 (ceval.c:3588)
20 org.python.python 0x000000010837313d function_call + 381 (funcobject.c:632)
21 org.python.python 0x000000010834dbc7 PyObject_Call + 103 (abstract.c:2040)
22 org.python.python 0x0000000108349367 PyObject_CallFunctionObjArgs + 359 (abstract.c:2332)
23 org.python.python 0x00000001083902fe _PyObject_GenericGetAttrWithDict + 142 (object.c:1043)
24 org.python.python 0x0000000108401ade PyEval_EvalFrameEx + 14094 (ceval.c:2420)
25 org.python.python 0x00000001083fe267 PyEval_EvalCodeEx + 2567 (ceval.c:3588)
26 org.python.python 0x00000001083fd84f PyEval_EvalCode + 63 (ceval.c:775)
27 org.python.python 0x00000001083fb07a builtin_exec + 602 (bltinmodule.c:882)
28 org.python.python 0x0000000108403913 PyEval_EvalFrameEx + 21827 (ceval.c:4237)
29 org.python.python 0x0000000108406fc2 fast_function + 210 (ceval.c:4334)
30 org.python.python 0x0000000108403314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
31 org.python.python 0x00000001083fe267 PyEval_EvalCodeEx + 2567 (ceval.c:3588)
32 org.python.python 0x000000010840702c fast_function + 316 (ceval.c:4348)
33 org.python.python 0x0000000108403314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
34 org.python.python 0x0000000108406fc2 fast_function + 210 (ceval.c:4334)
35 org.python.python 0x0000000108403314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
36 org.python.python 0x00000001083fe267 PyEval_EvalCodeEx + 2567 (ceval.c:3588)
37 org.python.python 0x000000010840702c fast_function + 316 (ceval.c:4348)
38 org.python.python 0x0000000108403314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
39 org.python.python 0x00000001083fe267 PyEval_EvalCodeEx + 2567 (ceval.c:3588)
40 org.python.python 0x000000010840702c fast_function + 316 (ceval.c:4348)
41 org.python.python 0x0000000108403314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
42 org.python.python 0x0000000108406fc2 fast_function + 210 (ceval.c:4334)
43 org.python.python 0x0000000108403314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
44 org.python.python 0x00000001083fe267 PyEval_EvalCodeEx + 2567 (ceval.c:3588)
45 org.python.python 0x000000010837313d function_call + 381 (funcobject.c:632)
46 org.python.python 0x000000010834dbc7 PyObject_Call + 103 (abstract.c:2040)
47 org.python.python 0x00000001083611bd method_call + 141 (classobject.c:347)
48 org.python.python 0x000000010834dbc7 PyObject_Call + 103 (abstract.c:2040)
49 org.python.python 0x000000010840665d PyEval_CallObjectWithKeywords + 93 (ceval.c:4114)
50 _core.so 0x000000010a4981fc wxPyCallback::EventThunker(wxEvent&) + 284 (sip_corewxEvtHandler.cpp:70)
51 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010b4d7dba wxEvtHandler::SearchDynamicEventTable(wxEvent&) + 186
52 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010b4d7b2b wxEvtHandler::ProcessEventLocally(wxEvent&) + 59
53 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010b4d7a3e wxEvtHandler::ProcessEvent(wxEvent&) + 190
54 _stc.so 0x0000000118b3f16a sipwxStyledTextCtrl::ProcessEvent(wxEvent&) + 154 (sip_stcwxStyledTextCtrl.cpp:1083)
55 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010b4d7e5f wxEvtHandler::SafelyProcessEvent(wxEvent&) + 15
56 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010b51657d wxWindow::OSXHandleKeyEvent(wxKeyEvent&) + 285
57 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010b5e3255 wxWidgetCocoaImpl::doCommandBySelector(void*, NSView*, void*) + 117
58 com.apple.AppKit 0x00007fff8f65cf11 -[NSTextInputContext(NSInputContext_WithCompletion) doCommandBySelector:completionHandler:] + 118
59 com.apple.AppKit 0x00007fff8f642d33 -[NSKeyBindingManager(NSKeyBindingManager_MultiClients) interpretEventAsCommand:forClient:] + 1899
60 com.apple.AppKit 0x00007fff8fc09292 61-[NSTextInputContext _handleEvent:options:completionHandler:]_block_invoke972 + 335
61 com.apple.AppKit 0x00007fff8f644d0f -[NSTextInputContext(NSInputContext_WithCompletion) hasMarkedTextWithCompletionHandler:] + 76
62 com.apple.AppKit 0x00007fff8f65ce13 61-[NSTextInputContext _handleEvent:options:completionHandler:]_block_invoke_3 + 95
63 com.apple.AppKit 0x00007fff8f655fe8 -[NSTextInputContext tryHandleEvent_HasMarkedText_withDispatchCondition:dispatchWork:continuation:] + 101
64 com.apple.AppKit 0x00007fff8fc09094 61-[NSTextInputContext _handleEvent:options:completionHandler:]_block_invoke960 + 321
65 com.apple.HIToolbox 0x00007fff8dc33d4f TSMProcessRawKeyEventWithOptionsAndCompletionHandler_block_invoke_5 + 70
66 com.apple.HIToolbox 0x00007fff8dc32c45 _ZL23DispatchEventToHandlersP14EventTargetRecP14OpaqueEventRefP14HandlerCallRec_block_invoke + 108
67 com.apple.AppKit 0x00007fff8f645716 55-[NSTextInputContext handleTSMEvent:completionHandler:]_block_invoke174 + 2387
68 com.apple.AppKit 0x00007fff8f644d0f -[NSTextInputContext(NSInputContext_WithCompletion) hasMarkedTextWithCompletionHandler:] + 76
69 com.apple.AppKit 0x00007fff8f644cb0 55-[NSTextInputContext handleTSMEvent:completionHandler:]_block_invoke_2 + 95
70 com.apple.AppKit 0x00007fff8f644c28 -[NSTextInputContext tryHandleTSMEvent_HasMarkedText_withDispatchCondition:dispatchWork:continuation:] + 101
71 com.apple.AppKit 0x00007fff8f6448e5 -[NSTextInputContext handleTSMEvent:completionHandler:] + 3122
72 com.apple.AppKit 0x00007fff8f643c3e _NSTSMEventHandler + 324
73 com.apple.HIToolbox 0x00007fff8dbccb6c DispatchEventToHandlers(EventTargetRec*, OpaqueEventRef*, HandlerCallRec*) + 1260
74 com.apple.HIToolbox 0x00007fff8dbcbfae SendEventToEventTargetInternal(OpaqueEventRef*, OpaqueEventTargetRef*, HandlerCallRec*) + 386
75 com.apple.HIToolbox 0x00007fff8dbcbe22 SendEventToEventTargetWithOptions + 43
76 com.apple.HIToolbox 0x00007fff8dc3026c SendTSMEvent_WithCompletionHandler + 417
77 com.apple.HIToolbox 0x00007fff8dc3076c SendUnicodeTextAEToUnicodeDoc_WithCompletionHandler_block_invoke + 400
78 com.apple.HIToolbox 0x00007fff8dc305a6 SendFilterTextEvent_WithCompletionHandler_block_invoke + 189
79 com.apple.HIToolbox 0x00007fff8dc302c0 SendTSMEvent_WithCompletionHandler + 501
80 com.apple.HIToolbox 0x00007fff8dc3008f SendFilterTextEvent_WithCompletionHandler + 236
81 com.apple.HIToolbox 0x00007fff8dc2fd51 SendUnicodeTextAEToUnicodeDoc_WithCompletionHandler + 295
82 com.apple.HIToolbox 0x00007fff8dc2fae9 utDeliverTSMEvent_WithCompletionHandler_block_invoke_2 + 296
83 com.apple.HIToolbox 0x00007fff8dc2f988 utDeliverTSMEvent_WithCompletionHandler_block_invoke + 437
84 com.apple.HIToolbox 0x00007fff8dc2f7cd TSMKeyEvent_WithCompletionHandler + 701
85 com.apple.HIToolbox 0x00007fff8dc2f4d0 TSMProcessRawKeyEventWithOptionsAndCompletionHandler_block_invoke_4 + 251
86 com.apple.HIToolbox 0x00007fff8dc2f386 TSMProcessRawKeyEventWithOptionsAndCompletionHandler_block_invoke_3 + 330
87 com.apple.HIToolbox 0x00007fff8dc2f112 TSMProcessRawKeyEventWithOptionsAndCompletionHandler_block_invoke_2 + 259
88 com.apple.HIToolbox 0x00007fff8dc2ef25 TSMProcessRawKeyEventWithOptionsAndCompletionHandler_block_invoke + 251
89 com.apple.HIToolbox 0x00007fff8dc1376f TSMProcessRawKeyEventWithOptionsAndCompletionHandler + 3068
90 com.apple.AppKit 0x00007fff8fc08ea6 61-[NSTextInputContext _handleEvent:options:completionHandler:]_block_invoke949 + 131
91 com.apple.AppKit 0x00007fff8f642462 -[NSTextInputContext tryTSMProcessRawKeyEvent:dispatchCondition:setupForDispatch:furtherCondition:dispatchWork:continuation:] + 127
92 com.apple.AppKit 0x00007fff8f642195 -[NSTextInputContext _handleEvent:options:completionHandler:] + 1266
93 com.apple.AppKit 0x00007fff8f641c5e -[NSTextInputContext handleEvent:] + 109
94 com.apple.AppKit 0x00007fff8f641b64 -[NSView interpretKeyEvents:] + 207
95 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010b5e6b29 wxWidgetCocoaImpl::DoHandleKeyEvent(NSEvent*) + 537
96 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010b5e2e6f wxWidgetCocoaImpl::keyEvent(NSEvent*, NSView*, void*) + 159
97 com.apple.AppKit 0x00007fff8fb3111b -[NSWindow _reallySendEvent:isDelayedEvent:] + 5452
98 com.apple.AppKit 0x00007fff8f4c2d76 -[NSWindow sendEvent:] + 470
99 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010b5d07c6 -[wxNSWindow sendEvent:] + 118
100 com.apple.AppKit 0x00007fff8f4bf9b1 -[NSApplication sendEvent:] + 4199
101 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010b4e5f36 -[wxNSApplication sendEvent:] + 134
102 com.apple.AppKit 0x00007fff8f3e8c68 -[NSApplication run] + 711
103 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010b5c4ec3 wxGUIEventLoop::OSXDoRun() + 115
104 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010b4a2c14 wxCFEventLoop::DoRun() + 52
105 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010b3cdb45 wxEventLoopBase::Run() + 165
106 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010b391ee1 wxAppConsoleBase::MainLoop() + 209
107 _core.so 0x000000010a714ee5 wxPyApp::MainLoop() + 181 (sip_corewxPyApp.cpp:316)
108 _core.so 0x000000010a71865d meth_wxPyApp_MainLoop(_object*, _object*) + 205 (sip_corewxPyApp.cpp:1794)
109 org.python.python 0x0000000108403913 PyEval_EvalFrameEx + 21827 (ceval.c:4237)
110 org.python.python 0x0000000108406fc2 fast_function + 210 (ceval.c:4334)
111 org.python.python 0x0000000108403314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
112 org.python.python 0x0000000108406fc2 fast_function + 210 (ceval.c:4334)
113 org.python.python 0x0000000108403314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
114 org.python.python 0x00000001083fe267 PyEval_EvalCodeEx + 2567 (ceval.c:3588)
115 org.python.python 0x000000010840702c fast_function + 316 (ceval.c:4348)
116 org.python.python 0x0000000108403314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
117 org.python.python 0x00000001083fe267 PyEval_EvalCodeEx + 2567 (ceval.c:3588)
118 org.python.python 0x00000001083fd84f PyEval_EvalCode + 63 (ceval.c:775)
119 org.python.python 0x000000010841dab5 PyImport_ImportFrozenModuleObject + 469 (import.c:869)
120 org.python.python 0x000000010841dba2 PyImport_ImportFrozenModule + 34 (import.c:1291)
121 org.python.python 0x000000010841745e Py_FrozenMain + 430 (frozenmain.c:84)
122 libdyld.dylib 0x00007fff8c2f45c9 start + 1

Thread 1:: Dispatch queue: com.apple.libdispatch-manager
0 libsystem_kernel.dylib 0x00007fff87db4232 kevent64 + 10
1 libdispatch.dylib 0x00007fff8750ca6a _dispatch_mgr_thread + 52

Thread 2:
0 libsystem_kernel.dylib 0x00007fff87db394a workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff8cda440d start_wqthread + 13

Thread 3:
0 libsystem_kernel.dylib 0x00007fff87dae4de mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff87dad64f mach_msg + 55
2 com.apple.CoreFoundation 0x00007fff81b75eb4 CFRunLoopServiceMachPort + 212
3 com.apple.CoreFoundation 0x00007fff81b7537b CFRunLoopRun + 1371
4 com.apple.CoreFoundation 0x00007fff81b74bd8 CFRunLoopRunSpecific + 296
5 com.apple.AppKit 0x00007fff8f4bb66b _NSEventThread + 137
6 libsystem_pthread.dylib 0x00007fff8cda6268 _pthread_body + 131
7 libsystem_pthread.dylib 0x00007fff8cda61e5 _pthread_start + 176
8 libsystem_pthread.dylib 0x00007fff8cda441d thread_start + 13

Thread 4:: OGL Profiler
0 libsystem_kernel.dylib 0x00007fff87dae4de mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff87dad64f mach_msg + 55
2 com.apple.opengl 0x00007fff8decba79 glcDebugListener + 336
3 libsystem_pthread.dylib 0x00007fff8cda6268 _pthread_body + 131
4 libsystem_pthread.dylib 0x00007fff8cda61e5 _pthread_start + 176
5 libsystem_pthread.dylib 0x00007fff8cda441d thread_start + 13

Thread 5:
0 libsystem_kernel.dylib 0x00007fff87db394a workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff8cda440d start_wqthread + 13

Thread 0 crashed with X86 Thread State (64-bit):

rax: 0x00006180005fffe8 rbx: 0xffffffffffffffff rcx: 0x00000000ffffffff rdx: 0x0000618000234e28
rdi: 0x0000000000000000 rsi: 0x000000009117259b rbp: 0x00007fff578c3100 rsp: 0x00007fff578c2e70

r8: 0x0000618000234e40 r9: 0x0000000000000010 r10: 0x000061800023b620 r11: 0xfffffffffffff1a0

r12: 0x00007fff578c30a0 r13: 0x000000009117259a r14: 0x0000618000234e58 r15: 0x0000000000000001
rip: 0x000000010a05d8dd rfl: 0x0000000000010282 cr2: 0x0000618000600008

Logical CPU: 6
Error Code: 0x00000004
Trap Number: 14

Binary Images:

0x108337000 - 0x108337fff +edu.ucsf.cgl.Chimera2 (2.0.0 - 2.0.0.0) <E3F7E2DF-42E7-3DC9-BE43-60FFF29D28D1> /Users/USER/*/Chimera2.app/Contents/MacOS/Chimera2
0x108341000 - 0x1084d0ff7 +org.python.python (3.4.3, [c] 2001-2015 Python Software Foundation. - 3.4.3) <B05216B6-F925-3443-8EDD-E303D42E94A4> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/Python
0x1088d1000 - 0x1088d2fff +_heapq.so (0) <C9A206E4-A401-3B7E-8740-A5BAE8839184> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_heapq.so
0x108916000 - 0x10891aff7 +_struct.so (0) <3D108042-4157-3FBA-B318-08C56E80698D> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_struct.so
0x108983000 - 0x108985fff +time.so (0) <307B7F4F-645D-3C3D-BFEF-0A5C4F6D390A> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/time.so
0x10898c000 - 0x10898dfff +_posixsubprocess.so (0) <EEFDE49E-4BFF-3D97-8F06-8946F073B3C5> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_posixsubprocess.so
0x108991000 - 0x108993ff7 +select.so (0) <A4E82A09-6F63-3DA7-A7EB-30597FC4AD82> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/select.so
0x1089d9000 - 0x1089ddff7 +math.so (0) <C7AC55D2-554C-352B-A739-ABAA213F73A7> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/math.so
0x108a24000 - 0x108a27ff7 +binascii.so (0) <F71A29DE-1EBF-3BD4-B753-8BF4C0D4CA31> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/binascii.so
0x108a2b000 - 0x108a3dfff +libz.1.dylib (0) <36544000-4EE5-3392-957E-4D2B77C70B5B> /Users/USER/*/libz.1.dylib
0x108a41000 - 0x108a4cff7 +_datetime.so (0) <9AE5EAA1-6686-32CE-B810-0D97535BD444> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_datetime.so
0x108a97000 - 0x108ac0fff +pyexpat.so (0) <32E313AD-F9E6-3744-BE64-6687CE52F33A> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/pyexpat.so
0x108b52000 - 0x108b52ff7 +_opcode.so (0) <7BA2D27A-F922-37C5-A54B-3EAAA737E552> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_opcode.so
0x108b95000 - 0x108ba6ff7 +_pickle.so (0) <BDBBFEF4-FC06-34C6-9F1B-A1ED83285598> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_pickle.so
0x108bb2000 - 0x108bd1fff +_geometry.so (0) <C6332D88-BF72-3390-98CC-5010D340559E> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/chimera/core/geometry/_geometry.so
0x108be0000 - 0x108c45fff +libarrays.dylib (0) <DAD14E47-589E-3820-BBF0-FD6870117812> /Users/USER/*/libarrays.dylib
0x108c93000 - 0x108c96fff +zlib.so (0) <3BCE3DFF-1B10-3484-A468-1117E5D76A7E> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/zlib.so
0x108c9b000 - 0x108c9cff7 +_bz2.so (0) <BDA4B442-81D6-3254-A1B1-E9A5C1E53E8D> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_bz2.so
0x108d60000 - 0x108d60fff +grp.so (0) <F6F2336F-6A42-319F-93D3-08C0AA807410> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/grp.so
0x108da3000 - 0x108da3ff7 +_bisect.so (0) <B8DDB08B-CC89-3354-B123-15061E0E63C6> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_bisect.so
0x108da6000 - 0x108da8ff7 +_hashlib.so (0) <50041DC6-EDEE-3D6A-BD44-CA0B8D97139C> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_hashlib.so
0x108dad000 - 0x108df0ff7 +libssl.1.0.0.dylib (0) <BEEF5C79-D723-36A2-857E-F3F5BA24BB0C> /Users/USER/*/libssl.1.0.0.dylib
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0x7fff9060f000 - 0x7fff9061cfff libxar.1.dylib (255) <7CD69BB5-97BA-3858-8A8B-2F33F129E6E7> /usr/lib/libxar.1.dylib
0x7fff90690000 - 0x7fff90698ff7 com.apple.icloud.FindMyDevice (1.0 - 1) <9CE67F85-2BA8-3093-97BA-07BF5C04A5D6> /System/Library/PrivateFrameworks/FindMyDevice.framework/Versions/A/FindMyDevice
0x7fff906a2000 - 0x7fff906c1fff com.apple.CoreDuet (1.0 - 1) <36AA9FD5-2685-314D-B364-3FA4688D86BD> /System/Library/PrivateFrameworks/CoreDuet.framework/Versions/A/CoreDuet
0x7fff90718000 - 0x7fff90725ff3 com.apple.ProtocolBuffer (1 - 228.0.1) <3429EB06-9F0E-355F-B9AB-F72879177398> /System/Library/PrivateFrameworks/ProtocolBuffer.framework/Versions/A/ProtocolBuffer
0x7fff90726000 - 0x7fff9072cff7 com.apple.XPCService (2.0 - 1) <AA4A5393-1F5D-3465-A417-0414B95DC052> /System/Library/PrivateFrameworks/XPCService.framework/Versions/A/XPCService
0x7fff90730000 - 0x7fff90734fff libCoreVMClient.dylib (79.1) <201EF6DF-5074-3CB7-A361-398CF957A264> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff907d5000 - 0x7fff907efff7 com.apple.Kerberos (3.0 - 1) <7760E0C2-A222-3709-B2A6-B692D900CEB1> /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos
0x7fff907f0000 - 0x7fff90811fff com.apple.framework.Apple80211 (10.3 - 1030.71.6) <D3862426-2586-3DF7-BA75-9A184FCD74C4> /System/Library/PrivateFrameworks/Apple80211.framework/Versions/A/Apple80211
0x7fff908fd000 - 0x7fff90917ff7 libextension.dylib (55.2) <3BB019CA-199A-36AC-AA22-14B562138545> /usr/lib/libextension.dylib
0x7fff9092e000 - 0x7fff9097fff7 com.apple.AppleVAFramework (5.0.31 - 5.0.31) <FED294D2-13CB-381D-98D0-BDA909AACA32> /System/Library/PrivateFrameworks/AppleVA.framework/Versions/A/AppleVA
0x7fff90b13000 - 0x7fff90c43fff com.apple.UIFoundation (1.0 - 1) <466BDFA8-0B9F-3AB0-989D-F9779422926A> /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation
0x7fff90c44000 - 0x7fff90c53fff com.apple.LangAnalysis (1.7.0 - 1.7.0) <D1E527E4-C561-352F-9457-E8C50232793C> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis
0x7fff90ede000 - 0x7fff90ef3ffb libCGInterfaces.dylib (294.1) <1A6AADE6-09EC-3054-85F9-E6A3607EBA70> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff90ef4000 - 0x7fff90fd8fff libcrypto.0.9.8.dylib (52.20.2) <977DA067-2588-3BF8-A7B2-F08FC6E9088F> /usr/lib/libcrypto.0.9.8.dylib
0x7fff90fd9000 - 0x7fff90fdbff7 libsystem_coreservices.dylib (9) <41B7C578-5A53-31C8-A96F-C73E030B0938> /usr/lib/system/libsystem_coreservices.dylib
0x7fff90fdc000 - 0x7fff913b3fe7 com.apple.CoreAUC (211.1.0 - 211.1.0) <12645629-E065-388E-A6B5-094A240578CE> /System/Library/PrivateFrameworks/CoreAUC.framework/Versions/A/CoreAUC
0x7fff9142e000 - 0x7fff914c2fff com.apple.ink.framework (10.9 - 213) <8E029630-1530-3734-A446-13353F0E7AC5> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
0x7fff9153a000 - 0x7fff91542ff3 com.apple.CoreServices.FSEvents (1210.20.1 - 1210.20.1) <84F79D3E-7B5E-3C93-8479-35794A3F125E> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/FSEvents.framework/Versions/A/FSEvents
0x7fff91543000 - 0x7fff91568ff7 libPng.dylib (1237) <CFBF1344-36AB-3AAE-B2EB-9FC1369F967F> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib
0x7fff91569000 - 0x7fff915dbfff com.apple.framework.IOKit (2.0.2 - 1050.20.2) <09C0518C-90DF-3FC3-96D6-34D35F72C8EF> /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
0x7fff915e1000 - 0x7fff915e9ffb libcopyfile.dylib (118.1.2) <0C68D3A6-ACDD-3EF3-991A-CC82C32AB836> /usr/lib/system/libcopyfile.dylib

External Modification Summary:

Calls made by other processes targeting this process:

task_for_pid: 1
thread_create: 0
thread_set_state: 0

Calls made by this process:

task_for_pid: 0
thread_create: 0
thread_set_state: 0

Calls made by all processes on this machine:

task_for_pid: 7255058
thread_create: 0
thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=298.8M resident=173.3M(58%) swapped_out_or_unallocated=125.5M(42%)
Writable regions: Total=215.7M written=46.9M(22%) resident=80.5M(37%) swapped_out=0K(0%) unallocated=135.1M(63%)

REGION TYPE VIRTUAL
=========== =======
Activity Tracing 2048K
CG backing stores 4280K
CG image 124K
CG raster data 1172K
CG shared images 304K
CoreAnimation 20K
CoreGraphics 4K
CoreImage 8K
CoreServices 3796K
CoreUI image data 108K
Foundation 4K
IOKit 11.5M
Kernel Alloc Once 8K
MALLOC 167.7M
MALLOC (admin) 32K
MALLOC_LARGE (reserved) 512K reserved VM address space (unallocated)
Memory Tag 242 12K
OpenCL 32K
OpenGL GLSL 256K
STACK GUARD 56.0M
Stack 10.1M
VM_ALLOCATE 17.2M
DATA 34.9M
GLSLBUILTINS 2588K
IMAGE 528K
LINKEDIT 87.1M
TEXT 211.7M
UNICODE 552K
mapped file 126.0M
shared memory 68K
=========== =======
TOTAL 738.3M
TOTAL, minus reserved VM space 737.8M

Model: iMac13,2, BootROM IM131.010A.B05, 4 processors, Intel Core i7, 3.4 GHz, 32 GB, SMC 2.11f16
Graphics: NVIDIA GeForce GTX 680MX, NVIDIA GeForce GTX 680MX, PCIe, 2048 MB
Memory Module: BANK 0/DIMM0, 8 GB, DDR3, 1600 MHz, 0x85F7, 0x483634314755363747313630304700000000
Memory Module: BANK 1/DIMM0, 8 GB, DDR3, 1600 MHz, 0x85F7, 0x483634314755363747313630304700000000
Memory Module: BANK 0/DIMM1, 8 GB, DDR3, 1600 MHz, 0x85F7, 0x483634314755363747313630304700000000
Memory Module: BANK 1/DIMM1, 8 GB, DDR3, 1600 MHz, 0x85F7, 0x483634314755363747313630304700000000
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0xF4), Broadcom BCM43xx 1.0 (7.15.166.24.3)
Bluetooth: Version 4.3.4f4 15601, 3 services, 27 devices, 1 incoming serial ports
Network Service: Ethernet, Ethernet, en0
Network Service: Wi-Fi, AirPort, en1
Serial ATA Device: APPLE HDD ST3000DM001, 3 TB
Serial ATA Device: APPLE SSD SM128E, 121.33 GB
USB Device: Kinesis Keyboard Hub
USB Device: Composite Device
USB Device: Keyboard Hub
USB Device: Composite Device
USB Device: Hub
USB Device: Rift DK2
USB Device: Rift DK2
USB Device: FaceTime HD Camera (Built-in)
USB Device: Hub
USB Device: Camera DK2
USB Device: Hub
USB Device: BRCM20702 Hub
USB Device: Bluetooth USB Host Controller
Thunderbolt Bus: iMac, Apple Inc., 23.4