Opened 23 months ago

Closed 23 months ago

#10353 closed defect (can't reproduce)

Crash updating item menu/list

Reported by: chimerax-bug-report@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: General Controls Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Linux-5.15.0-46-generic-x86_64-with-glibc2.31
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault

Current thread 0x00007f80e435e740 (most recent call first):
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/ui/widgets/item_chooser.py", line 46 in _item_names
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/ui/widgets/item_chooser.py", line 169 in _items_change
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 138 in invoke
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 237 in _activate
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 206 in activate
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 382 in activate_trigger
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/atomic/changes.py", line 43 in check_for_changes
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/atomic/__init__.py", line 66 in 
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 138 in invoke
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 237 in _activate
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 206 in activate
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 382 in activate_trigger
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/commands/cli.py", line 2994 in command_trigger
  File "/usr/lib/ucsf-chimerax/lib/python3.9/contextlib.py", line 126 in __exit__
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/commands/cli.py", line 2924 in run
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/commands/run.py", line 38 in run
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/model_panel/tool.py", line 401 in close
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/model_panel/tool.py", line 89 in 
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in 
  File "/usr/lib/ucsf-chimerax/lib/python3.9/runpy.py", line 87 in _run_code
  File "/usr/lib/ucsf-chimerax/lib/python3.9/runpy.py", line 197 in _run_module_as_main
===== Log before crash start =====
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open tubulin_alpha.cif

Summary of feedback from opening tubulin_alpha.cif  
---  
warnings | Invalid residue range for struct_conf "HELX1": invalid chain "A",
near line 518082  
Invalid residue range for struct_conf "HELX2": invalid chain "A", near line
518083  
Invalid residue range for struct_conf "HELX3": invalid chain "A", near line
518084  
Invalid residue range for struct_conf "HELX4": invalid chain "A", near line
518085  
Invalid residue range for struct_conf "HELX5": invalid chain "A", near line
518086  
3463 messages similar to the above omitted  
Invalid sheet range for struct_sheet_range "? 1": invalid chain "CA", near
line 526597  
Invalid sheet range for struct_sheet_range "? 2": invalid chain "CA", near
line 526598  
Invalid sheet range for struct_sheet_range "? 3": invalid chain "DA", near
line 526599  
Invalid sheet range for struct_sheet_range "? 4": invalid chain "DA", near
line 526600  
Invalid sheet range for struct_sheet_range "? 5": invalid chain "EA", near
line 526601  
1498 messages similar to the above omitted  
  
Chain information for tubulin_alpha.cif #1  
---  
Chain | Description  
1b 1d 1f 1h 2b 2d 2f 2h 3b 3d 3f 3h 4b 4d 4f 4h 5b 5d 5f 5h 6b 6d 6f 6h 7b 7d
7f 7h 8b 8d 8f 8h 9b 9d 9f 9h Ab Ad Af Ah Bb Bd Bf Bh Cb Cd Cf Ch Db Dd Df Dh
| Tubulin alpha  
  

> color bypolymer

> open /data2/zhuyun/MouseSperm/CPC/Building/crC1_7n6g_rest.cif

Chain information for crC1_7n6g_rest.cif #2  
---  
Chain | Description  
0A 0B 0C 0D 0E 0F 0G 0H 0I 0J 0K 0L 0M 0N 0O 0P 0Q 0R 0S 0T 0U 0V 0W 0X 0Y 0Z
1A 1B 1C | PF16  
1D 1E 1F 1G | FAP194  
1H 1I 6D | FAP69  
1J 1K | HYDIN  
1L 1M | FAP47  
1N | FAP46  
1O | FAP54  
1P | HTH_9 domain-containing protein  
1Q | FAP297  
1R 1S | FAP108  
1T | FAP76  
2F 2G | FAP275  
2H | Unknown protein  
2I | Unknown protein  
2J 2K | Unknown protein  
2L | Unknown protein  
2M | Unknown protein  
2N | Unknown protein  
2O | Unknown protein  
2P | Unknown protein  
2Q 2R | Unknown protein  
2S 2T 2U 2V | FAP289  
2W 2X | Unknown protein  
2Y 2Z | Unknown protein  
3A 3B | Unknown protein  
3C | FAP216  
3E | FAP92  
3F 3G | FAP99  
3H 3I | FAP74  
3J 3K | FAP360  
3L | FAP279  
3M 3N 3O 3P 3Q 3R 3S 3T 3U 3V 3W 3X 3Y 3Z 4A 4B | FAP7  
4C | FAP81  
4D | FAP15  
4E 4F 4G 4H | PF6  
4I 4J 4K 4L 4M 4N 4O 4P | DPY30  
4Q 4R 4S | FAP305  
4T 4U 4V | FAP101  
4W 4X 4Y 4Z 5A 5B 5C 5D | FAP227  
5E 5F 5G 5H | FAP114  
5I 5J 5K 5L | FAP119  
5M 5N 5O 5P 5Q 5R 5S 5T 5U 5V | Calmodulin  
5W 5X 5Y | Unknown protein  
5Z | Unknown protein  
6A 6B | CPC1  
6E 6F | FAP246  
6G 6H 6I 6J | Phosphopyruvate hydratase  
6K 6L | Heat shock protein 70A  
6M 6N | FAP42  
6O 6P 6Q | Unknown protein  
  

> hide #!2 models

Drag select of 845 atoms, 1 pseudobonds, 2 bonds  

> select up

1102 atoms, 1101 bonds, 1 pseudobond, 139 residues, 2 models selected  

> select up

2249 atoms, 2291 bonds, 1 pseudobond, 288 residues, 2 models selected  

> select up

6710 atoms, 6854 bonds, 1 pseudobond, 861 residues, 2 models selected  
Drag select of 958 atoms  

> select up

1105 atoms, 1113 bonds, 144 residues, 1 model selected  

> select up

1782 atoms, 1816 bonds, 228 residues, 1 model selected  

> select up

3055 atoms, 3120 bonds, 393 residues, 1 model selected  

> open /data2/zhuyun/MouseSperm/CPC/Building/8iyj_tubulin_ab.cif

Summary of feedback from opening
/data2/zhuyun/MouseSperm/CPC/Building/8iyj_tubulin_ab.cif  
---  
warnings | Invalid residue range for struct_conf "HELX1": invalid chain "A",
near line 518605  
Invalid residue range for struct_conf "HELX2": invalid chain "A", near line
518606  
Invalid residue range for struct_conf "HELX3": invalid chain "A", near line
518607  
Invalid residue range for struct_conf "HELX4": invalid chain "B", near line
518608  
Invalid residue range for struct_conf "HELX5": invalid chain "B", near line
518609  
10015 messages similar to the above omitted  
Invalid sheet range for struct_sheet_range "? 1": invalid chain "B", near line
538758  
Invalid sheet range for struct_sheet_range "? 2": invalid chain "B", near line
538759  
Invalid sheet range for struct_sheet_range "? 3": invalid chain "B", near line
538760  
Invalid sheet range for struct_sheet_range "? 4": invalid chain "C", near line
538761  
Invalid sheet range for struct_sheet_range "? 5": invalid chain "F", near line
538762  
4159 messages similar to the above omitted  
  
Chain information for 8iyj_tubulin_ab.cif #3  
---  
Chain | Description  
AA | Tubulin alpha-3 chain  
AB | Tubulin beta-4B chain  
  

> ui tool show Matchmaker

> close #2


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open tubulin_alpha.cif

Summary of feedback from opening tubulin_alpha.cif  
---  
warnings | Invalid residue range for struct_conf "HELX1": invalid chain "A",
near line 518082  
Invalid residue range for struct_conf "HELX2": invalid chain "A", near line
518083  
Invalid residue range for struct_conf "HELX3": invalid chain "A", near line
518084  
Invalid residue range for struct_conf "HELX4": invalid chain "A", near line
518085  
Invalid residue range for struct_conf "HELX5": invalid chain "A", near line
518086  
3463 messages similar to the above omitted  
Invalid sheet range for struct_sheet_range "? 1": invalid chain "CA", near
line 526597  
Invalid sheet range for struct_sheet_range "? 2": invalid chain "CA", near
line 526598  
Invalid sheet range for struct_sheet_range "? 3": invalid chain "DA", near
line 526599  
Invalid sheet range for struct_sheet_range "? 4": invalid chain "DA", near
line 526600  
Invalid sheet range for struct_sheet_range "? 5": invalid chain "EA", near
line 526601  
1498 messages similar to the above omitted  
  
Chain information for tubulin_alpha.cif #1  
---  
Chain | Description  
1b 1d 1f 1h 2b 2d 2f 2h 3b 3d 3f 3h 4b 4d 4f 4h 5b 5d 5f 5h 6b 6d 6f 6h 7b 7d
7f 7h 8b 8d 8f 8h 9b 9d 9f 9h Ab Ad Af Ah Bb Bd Bf Bh Cb Cd Cf Ch Db Dd Df Dh
| Tubulin alpha  
  

> open crC1_7n6g_rest.cif

Chain information for crC1_7n6g_rest.cif #2  
---  
Chain | Description  
0A 0B 0C 0D 0E 0F 0G 0H 0I 0J 0K 0L 0M 0N 0O 0P 0Q 0R 0S 0T 0U 0V 0W 0X 0Y 0Z
1A 1B 1C | PF16  
1D 1E 1F 1G | FAP194  
1H 1I 6D | FAP69  
1J 1K | HYDIN  
1L 1M | FAP47  
1N | FAP46  
1O | FAP54  
1P | HTH_9 domain-containing protein  
1Q | FAP297  
1R 1S | FAP108  
1T | FAP76  
2F 2G | FAP275  
2H | Unknown protein  
2I | Unknown protein  
2J 2K | Unknown protein  
2L | Unknown protein  
2M | Unknown protein  
2N | Unknown protein  
2O | Unknown protein  
2P | Unknown protein  
2Q 2R | Unknown protein  
2S 2T 2U 2V | FAP289  
2W 2X | Unknown protein  
2Y 2Z | Unknown protein  
3A 3B | Unknown protein  
3C | FAP216  
3E | FAP92  
3F 3G | FAP99  
3H 3I | FAP74  
3J 3K | FAP360  
3L | FAP279  
3M 3N 3O 3P 3Q 3R 3S 3T 3U 3V 3W 3X 3Y 3Z 4A 4B | FAP7  
4C | FAP81  
4D | FAP15  
4E 4F 4G 4H | PF6  
4I 4J 4K 4L 4M 4N 4O 4P | DPY30  
4Q 4R 4S | FAP305  
4T 4U 4V | FAP101  
4W 4X 4Y 4Z 5A 5B 5C 5D | FAP227  
5E 5F 5G 5H | FAP114  
5I 5J 5K 5L | FAP119  
5M 5N 5O 5P 5Q 5R 5S 5T 5U 5V | Calmodulin  
5W 5X 5Y | Unknown protein  
5Z | Unknown protein  
6A 6B | CPC1  
6E 6F | FAP246  
6G 6H 6I 6J | Phosphopyruvate hydratase  
6K 6L | Heat shock protein 70A  
6M 6N | FAP42  
6O 6P 6Q | Unknown protein  
  

> open 8iyj_tubulin_ab.cif

Summary of feedback from opening 8iyj_tubulin_ab.cif  
---  
warnings | Invalid residue range for struct_conf "HELX1": invalid chain "A",
near line 518605  
Invalid residue range for struct_conf "HELX2": invalid chain "A", near line
518606  
Invalid residue range for struct_conf "HELX3": invalid chain "A", near line
518607  
Invalid residue range for struct_conf "HELX4": invalid chain "B", near line
518608  
Invalid residue range for struct_conf "HELX5": invalid chain "B", near line
518609  
10015 messages similar to the above omitted  
Invalid sheet range for struct_sheet_range "? 1": invalid chain "B", near line
538758  
Invalid sheet range for struct_sheet_range "? 2": invalid chain "B", near line
538759  
Invalid sheet range for struct_sheet_range "? 3": invalid chain "B", near line
538760  
Invalid sheet range for struct_sheet_range "? 4": invalid chain "C", near line
538761  
Invalid sheet range for struct_sheet_range "? 5": invalid chain "F", near line
538762  
4159 messages similar to the above omitted  
  
Chain information for 8iyj_tubulin_ab.cif #3  
---  
Chain | Description  
AA | Tubulin alpha-3 chain  
AB | Tubulin beta-4B chain  
  




OpenGL version: 3.3.0 NVIDIA 525.89.02
OpenGL renderer: Quadro RTX 6000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: en_US.UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: xcb

XDG_SESSION_TYPE=x11
DESKTOP_SESSION=ubuntu
XDG_SESSION_DESKTOP=ubuntu
XDG_CURRENT_DESKTOP=ubuntu:GNOME
DISPLAY=:1
Manufacturer: Supermicro
Model: X11DPi-N(T)
OS: Ubuntu 20.04 Focal Fossa
Architecture: 64bit ELF
Virtual Machine: none
CPU: 40 Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
Cache Size: 14080 KB
Memory:
	              total        used        free      shared  buff/cache   available
	Mem:          141Gi        61Gi        64Gi       657Mi        15Gi        77Gi
	Swap:         2.0Gi       1.8Gi       211Mi

Graphics:
	03:00.0 VGA compatible controller [0300]: ASPEED Technology, Inc. ASPEED Graphics Family [1a03:2000] (rev 41)	
	DeviceName: Aspeed Video 2500	
	Subsystem: ASPEED Technology, Inc. ASPEED Graphics Family [1a03:2000]

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2023.5.7
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9.1
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-ArtiaX: 0.3
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.21.0
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.1
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.6.0
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-LinuxSupport: 1.0.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    distro: 1.7.0
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    geomdl: 5.3.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.9.26
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 23.1
    pandas: 2.0.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    starfile: 0.4.12
    superqt: 0.4.1
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.1
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    zipp: 3.15.0

Change History (2)

comment:1 by Eric Pettersen, 23 months ago

Component: Unassigned → General Controls
Owner: set to Eric Pettersen
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → Crash updating item menu/list

comment:2 by Eric Pettersen, 23 months ago

Resolution: → can't reproduce
Status: accepted → closed

Seems unlikely to be the line in the traceback, which is just:

self.value_map = {}

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