id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 10203 Unknown crash chencarina21@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Process: ChimeraX [40172] Path: /Applications/ChimeraX-1.6.1.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.6.1 (1.6.1.0) Code Type: X86-64 (Translated) Parent Process: ??? [1] Responsible: ChimeraX [40172] User ID: 501 Date/Time: 2023-11-21 11:03:49.082 -0800 OS Version: macOS 11.4 (20F71) Report Version: 12 Anonymous UUID: 0FB2C93A-1B81-DE2E-6994-8C2454AA8E47 Sleep/Wake UUID: 26F3221B-9620-4DB4-8953-531908E37672 Time Awake Since Boot: 330000 seconds Time Since Wake: 5500 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: KERN_INVALID_ADDRESS at 0x0000ce1b2a01d2c8 -> 0x00004e1b2a01d2c8 (possible pointer authentication failure) Exception Note: EXC_CORPSE_NOTIFY VM Regions Near 0x4e1b2a01d2c8: GPU Carveout (reserved) 1000000000-7000000000 [384.0G] ---/--- SM=NUL reserved VM address space (unallocated) --> MALLOC_NANO 600000000000-600008000000 [128.0M] rw-/rwx SM=SHM Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2031392e __pthread_kill + 10 2 libsystem_c.dylib 0x00007fff20226be5 raise + 26 3 libsystem_platform.dylib 0x00007fff20387d7d _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 com.apple.framework.IOKit 0x00007fff22a2094e io_connect_method + 827 6 ??? 0x0000000000000018 0 + 24 Thread 1:: com.apple.rosetta.exceptionserver 0 runtime 0x00007ffdffc8b858 0x7ffdffc8a000 + 6232 1 runtime 0x00007ffdffc95d50 0x7ffdffc8a000 + 48464 2 runtime 0x00007ffdffc96a20 0x7ffdffc8a000 + 51744 Thread 2:: ThreadPoolServiceThread 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff203161d2 kevent64 + 10 2 QtWebEngineCore 0x000000013063b26f 0x12c166000 + 72176239 3 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483 4 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098 5 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792 6 QtWebEngineCore 0x00000001305e8aad 0x12c166000 + 71838381 7 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194 8 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480 9 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 3:: Chrome_IOThread 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff203161d2 kevent64 + 10 2 QtWebEngineCore 0x000000013063b26f 0x12c166000 + 72176239 3 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483 4 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098 5 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792 6 QtWebEngineCore 0x000000012de1f572 0x12c166000 + 30119282 7 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194 8 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480 9 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 4:: NetworkConfigWatcher 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299 3 QtWebEngineCore 0x000000013063471f 0x12c166000 + 72148767 4 QtWebEngineCore 0x000000013055fe69 0x12c166000 + 71278185 5 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483 6 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098 7 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792 8 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194 9 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480 10 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 11 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 5:: Chrome_InProcGpuThread 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299 3 QtWebEngineCore 0x000000013055fe08 0x12c166000 + 71278088 4 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483 5 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098 6 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792 7 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194 8 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480 9 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 6:: Chrome_ChildIOThread 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff203161d2 kevent64 + 10 2 QtWebEngineCore 0x000000013063b26f 0x12c166000 + 72176239 3 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483 4 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098 5 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792 6 QtWebEngineCore 0x0000000133261882 0x12c166000 + 118470786 7 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194 8 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480 9 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 7:: CompositorTileWorker1 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 QtWebEngineCore 0x000000013062ce22 0x12c166000 + 72117794 3 QtWebEngineCore 0x000000013286f505 0x12c166000 + 108041477 4 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480 5 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 6 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 8:: ThreadPoolSingleThreadSharedForeground0 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299 3 QtWebEngineCore 0x00000001305f54af 0x12c166000 + 71890095 4 QtWebEngineCore 0x00000001305f6057 0x12c166000 + 71893079 5 QtWebEngineCore 0x00000001305f5bbd 0x12c166000 + 71891901 6 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480 7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 9:: VizCompositorThread 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299 3 QtWebEngineCore 0x000000013063471f 0x12c166000 + 72148767 4 QtWebEngineCore 0x000000013055fe69 0x12c166000 + 71278185 5 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483 6 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098 7 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792 8 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194 9 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480 10 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 11 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 10:: NetworkConfigWatcher 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299 3 QtWebEngineCore 0x000000013063471f 0x12c166000 + 72148767 4 QtWebEngineCore 0x000000013055fe69 0x12c166000 + 71278185 5 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483 6 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098 7 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792 8 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194 9 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480 10 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 11 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 11:: NetworkService 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff203161d2 kevent64 + 10 2 QtWebEngineCore 0x000000013063b26f 0x12c166000 + 72176239 3 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483 4 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098 5 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792 6 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194 7 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480 8 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 12:: NetworkConfigWatcher 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299 3 QtWebEngineCore 0x000000013063471f 0x12c166000 + 72148767 4 QtWebEngineCore 0x000000013055fe69 0x12c166000 + 71278185 5 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483 6 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098 7 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792 8 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194 9 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480 10 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 11 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 13:: ThreadPoolSingleThreadForegroundBlocking1 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299 3 QtWebEngineCore 0x00000001305f54af 0x12c166000 + 71890095 4 QtWebEngineCore 0x00000001305f6057 0x12c166000 + 71893079 5 QtWebEngineCore 0x00000001305f5bed 0x12c166000 + 71891949 6 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480 7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 14:: NetworkConfigWatcher 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299 3 QtWebEngineCore 0x000000013063471f 0x12c166000 + 72148767 4 QtWebEngineCore 0x000000013055fe69 0x12c166000 + 71278185 5 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483 6 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098 7 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792 8 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194 9 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480 10 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 11 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 15:: com.apple.NSEventThread 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 com.apple.CoreFoundation 0x00007fff2043b8c5 __CFRunLoopServiceMachPort + 316 3 com.apple.CoreFoundation 0x00007fff20439f7b __CFRunLoopRun + 1332 4 com.apple.CoreFoundation 0x00007fff20439380 CFRunLoopRunSpecific + 567 5 com.apple.AppKit 0x00007fff22cea68a _NSEventThread + 124 6 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 7 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 16:: ThreadPoolBackgroundWorker 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299 3 QtWebEngineCore 0x00000001305f54af 0x12c166000 + 71890095 4 QtWebEngineCore 0x00000001305f6057 0x12c166000 + 71893079 5 QtWebEngineCore 0x00000001305f5afd 0x12c166000 + 71891709 6 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480 7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 17:: MemoryInfra 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299 3 QtWebEngineCore 0x000000013063471f 0x12c166000 + 72148767 4 QtWebEngineCore 0x000000013055fe69 0x12c166000 + 71278185 5 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483 6 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098 7 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792 8 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194 9 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480 10 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 11 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 18:: ThreadPoolSingleThreadSharedBackgroundBlocking2 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299 3 QtWebEngineCore 0x00000001305f54af 0x12c166000 + 71890095 4 QtWebEngineCore 0x00000001305f5d0c 0x12c166000 + 71892236 5 QtWebEngineCore 0x00000001305f5b2d 0x12c166000 + 71891757 6 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480 7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 19:: ThreadPoolBackgroundWorker 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299 3 QtWebEngineCore 0x00000001305f54af 0x12c166000 + 71890095 4 QtWebEngineCore 0x00000001305f6057 0x12c166000 + 71893079 5 QtWebEngineCore 0x00000001305f5afd 0x12c166000 + 71891709 6 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480 7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 20:: NetworkConfigWatcher 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299 3 QtWebEngineCore 0x000000013063471f 0x12c166000 + 72148767 4 QtWebEngineCore 0x000000013055fe69 0x12c166000 + 71278185 5 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483 6 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098 7 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792 8 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194 9 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480 10 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 11 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 21:: CacheThread_BlockFile 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff203161d2 kevent64 + 10 2 QtWebEngineCore 0x000000013063b26f 0x12c166000 + 72176239 3 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483 4 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098 5 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792 6 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194 7 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480 8 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 22:: ThreadPoolForegroundWorker 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299 3 QtWebEngineCore 0x00000001305f54af 0x12c166000 + 71890095 4 QtWebEngineCore 0x00000001305f6057 0x12c166000 + 71893079 5 QtWebEngineCore 0x00000001305f5b8d 0x12c166000 + 71891853 6 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480 7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 23:: ThreadPoolForegroundWorker 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299 3 QtWebEngineCore 0x00000001305f54af 0x12c166000 + 71890095 4 QtWebEngineCore 0x00000001305f6057 0x12c166000 + 71893079 5 QtWebEngineCore 0x00000001305f5b8d 0x12c166000 + 71891853 6 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480 7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 24: 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 libopenblas64_.0.dylib 0x000000010e1b923f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 25: 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 libopenblas64_.0.dylib 0x000000010e1b923f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 26: 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 libopenblas64_.0.dylib 0x000000010e1b923f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 27: 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 libopenblas64_.0.dylib 0x000000010e1b923f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 28: 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 libopenblas64_.0.dylib 0x000000010e1b923f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 29: 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 libopenblas64_.0.dylib 0x000000010e1b923f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 30: 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 libopenblas64_.0.dylib 0x000000010e1b923f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 31: 0 runtime 0x00007ffdffce499c 0x7ffdffc8a000 + 371100 Thread 32: 0 runtime 0x00007ffdffce499c 0x7ffdffc8a000 + 371100 Thread 33:: QFileInfoGatherer 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 QtCore 0x0000000125eebb8b 0x125ce9000 + 2108299 3 QtCore 0x0000000125eebafe QWaitCondition::wait(QMutex*, QDeadlineTimer) + 94 4 QtGui 0x000000012a85fe1d QFileInfoGatherer::run() + 125 5 QtCore 0x0000000125ee1d83 0x125ce9000 + 2067843 6 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 7 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 34:: QFileInfoGatherer 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 QtCore 0x0000000125eebb8b 0x125ce9000 + 2108299 3 QtCore 0x0000000125eebafe QWaitCondition::wait(QMutex*, QDeadlineTimer) + 94 4 QtGui 0x000000012a85fe1d QFileInfoGatherer::run() + 125 5 QtCore 0x0000000125ee1d83 0x125ce9000 + 2067843 6 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 7 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 35:: Dispatch queue: CoreController.server-connection-workloop 0 libobjc.A.dylib 0x00007fff201e07ae objc_msgSend + 46 1 com.apple.Foundation 0x00007fff213513d6 _decodeObject + 1249 2 com.apple.Foundation 0x00007fff210b2955 -[NSXPCDecoder _decodeObjectOfClasses:atObject:] + 63 3 com.apple.Foundation 0x00007fff210fc824 _NSXPCSerializationDecodeInvocationObjectOnlyArgumentArray + 449 4 com.apple.Foundation 0x00007fff210b15c6 -[NSXPCDecoder __decodeXPCObject:allowingSimpleMessageSend:outInvocation:outArguments:outArgumentsMaxCount:outMethodSignature:outSelector:isReply:replySelector:interface:] + 1390 5 com.apple.Foundation 0x00007fff210fc651 -[NSXPCDecoder _decodeMessageFromXPCObject:allowingSimpleMessageSend:outInvocation:outArguments:outArgumentsMaxCount:outMethodSignature:outSelector:interface:] + 33 6 com.apple.Foundation 0x00007fff210fb48b -[NSXPCConnection _decodeAndInvokeMessageWithEvent:flags:] + 418 7 com.apple.Foundation 0x00007fff210b3249 message_handler + 206 8 libxpc.dylib 0x00007fff20088c24 _xpc_connection_call_event_handler + 56 9 libxpc.dylib 0x00007fff20087a9b _xpc_connection_mach_event + 938 10 libdispatch.dylib 0x00007fff201988a6 _dispatch_client_callout4 + 9 11 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/System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit 0x7fff3db17000 - 0x7fff3dc2dfff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit 0x7fff3dc2e000 - 0x7fff3dc3ffff com.apple.sidecar-ui (1.0 - 231) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI 0x7fff3e262000 - 0x7fff3e2c4fff com.apple.ImageCaptureCore (1711.5.2 - 1711.5.2) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore 0x7fff3e2c5000 - 0x7fff3e2eafff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters 0x7fff3e536000 - 0x7fff3e698fff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer 0x7fff3e699000 - 0x7fff3e97afff com.apple.iTunesCloud (1.0 - 1) /System/Library/PrivateFrameworks/iTunesCloud.framework/Versions/A/iTunesCloud 0x7fff3e9a6000 - 0x7fff3ead2fff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit 0x7fff3ead3000 - 0x7fff3ef73fff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer 0x7fff3ef74000 - 0x7fff3f05cfff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit 0x7fff3fd9f000 - 0x7fff3fe1cfff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput 0x7fff40fb6000 - 0x7fff40fb9fff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz 0x7fff413de000 - 0x7fff413fbfff libCGInterfaces.dylib (544.4) 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/System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics 0x7fff48390000 - 0x7fff483abfff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics 0x7fff51757000 - 0x7fff51784fff com.apple.HelpData (2.3 - 201) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData 0x7fff51785000 - 0x7fff5179ffff com.apple.shortcut (2.16 - 118) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut 0x7fff517a0000 - 0x7fff5183ffff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication 0x7fff51a2e000 - 0x7fff51a31fff libpmsample.dylib (227.100.2) /usr/lib/libpmsample.dylib 0x7fff540d3000 - 0x7fff54109fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit 0x7fff556fd000 - 0x7fff55700fff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback 0x7fff697df000 - 0x7fff697e3fff libmetal_timestamp.dylib (31001.189) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib 0x7fff6bc2a000 - 0x7fff6bc30fff libCoreFSCache.dylib (200.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib 0x7fff6bc31000 - 0x7fff6bc35fff libCoreVMClient.dylib (200.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib 0x7fff6bc36000 - 0x7fff6bc45fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL 0x7fff6bc46000 - 0x7fff6bc48fff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib 0x7fff6bc49000 - 0x7fff6bc51fff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib 0x7fff6bc52000 - 0x7fff6bc85fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib 0x7fff6bc86000 - 0x7fff6bcc2fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib 0x7fff6bcc3000 - 0x7fff6be56fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib 0x7fff6be57000 - 0x7fff6be61fff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib 0x7fff6be62000 - 0x7fff6bfdffff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine 0x7fff6bfe0000 - 0x7fff6c008fff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat 0x7fff6d2a1000 - 0x7fff6d2f9fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL 0x7fff6e3a3000 - 0x7fff6e3aafff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL 0x7fff6e3ab000 - 0x7fff6e492fff com.apple.audio.AVFAudio (1.0 - 477.87) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio 0x7fff6fa10000 - 0x7fff6fa22fff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging 0x7fff73cf0000 - 0x7fff73cfbfff com.apple.SymptomAnalytics (1.0 - 1431.120.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics 0x7fff73f11000 - 0x7fff73f29fff com.apple.SymptomPresentationFeed (1.0 - 1431.120.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed 0x7fff77a9f000 - 0x7fff77aa6fff libRosetta.dylib (203.46) /usr/lib/libRosetta.dylib Translated Code Information: tmp0: 0xffffffffffffffff tmp1: 0x00007ffe942fea8c tmp2: 0x00007fff20313924 External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 0 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%) Writable regions: Total=2.3G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.3G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 384K 3 Activity Tracing 256K 1 CG backing stores 3264K 6 CG image 372K 37 CoreAnimation 160K 17 CoreGraphics 12K 2 CoreServices 624K 2 CoreUI image data 3300K 26 Foundation 32K 2 Kernel Alloc Once 8K 1 MALLOC 943.6M 262 MALLOC guard page 192K 8 MALLOC_MEDIUM (reserved) 576.0M 8 reserved VM address space (unallocated) MALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated) OpenGL GLSL 384K 4 Rosetta Arena 2048K 1 Rosetta Generic 1468K 364 Rosetta IndirectBranch 2048K 1 Rosetta JIT 128.0M 1 Rosetta Return Stack 916K 90 Rosetta Thread Context 900K 90 STACK GUARD 36K 9 Stack 195.1M 45 Stack Guard 56.2M 36 VM_ALLOCATE 147.1M 218 VM_ALLOCATE (reserved) 128.1M 17 reserved VM address space (unallocated) __DATA 36.2M 639 __DATA_CONST 25.5M 306 __DATA_DIRTY 1713K 212 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 536.8M 195 __OBJC_RO 70.2M 1 __OBJC_RW 2480K 2 __TEXT 667.5M 622 __UNICODE 588K 1 mapped file 4.8G 1107 shared memory 844K 25 unshared pmap 10.5M 6 =========== ======= ======= TOTAL 8.5G 4370 TOTAL, minus reserved VM space 7.5G 4370 Log: UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. > open ""/Users/carinachen/Desktop/rothman/genes to focus on/ebp-2 > VW02B12L.3.1/ebp-2 VW02B12L.3.1 colored domain.cxs"" Log from Tue Nov 21 11:02:44 2023UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > ui tool show AlphaFold Populating font family aliases took 822 ms. Replace uses of missing font family ""Monospace"" with one that exists to avoid this cost. > alphafold predict > MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAGNTPAGGTPGYRAPVPPDPQPTSAQARNPPVTVATTQASTTPSAPNPPGGLPAPSASATAAVAAAVASFPSPDTSIRPGGQITPGSQAPGGGPTPAPNVPFPNGSSQMNGGPAMGQPPPQMGAPNMGGPPNGYGGYGMMNGPPGSGAPMGGNPYNQQIKKDMDQARPWDPSAHMYQQQPQWGAMPPQQPHGYPGRPMNGQGATPTGPSSVLESLINQPQQYPGHHNQMGPPGDRNVAAQRAAAQQQQQQQQQQQQQRPGMVPNQGMMSSEDQTVYSAKLRNMRGSCDSLRTRARQCRHEGNHEAAHKLEVMLSVLEGKRVVSLEYLNHLEMWIARKQDFLNIAPMSQNQNHMGMNDPMMNGEHAMLGNGQVPNPYGGHPGYGHQQYMGPPPPHMQMHQPPMWHQQQHQQQQRMMPQDHMMMQGGGGPVHGMYRGDMGHDPMTSPVNNHRHAPYPNPAAMRNNMRMPNGPGPIGRDRNSMSGSSMSGPSSGAPSMNPMGTPNQKMGTPGSMGGMSGLDDLNYDDFLPNPTPIDALQPTLHVGQNSMNAGPPVQRSNLNETARKELQILDARFEIDPNHQRHDANHIIVVCKIRNQQFPPLRLVVPTTYPAGNVTVDRAVIDLDAYLYDDLQNSVYERLSRPGLSSITDYLNAWEEQVNQYQNQTSGGLDVAFNVGNDFFYDNLNL Please cite ColabFold: Making protein folding accessible to all. Nature Methods (2022) if you use these predictions. Running AlphaFold prediction [Repeated 7 time(s)] > open ""/Users/carinachen/Desktop/rothman/genes to focus on/cdk-12 B0285.1a > /cdk-12 B0285.1a wildtype RAW.pdb"" Chain information for cdk-12 B0285.1a wildtype RAW.pdb #1 --- Chain | Description A | No description available > ui tool show ""Show Sequence Viewer"" > sequence chain /A Alignment identifier is 1/A > select /A:317 8 atoms, 7 bonds, 1 residue, 1 model selected > select /A:317 8 atoms, 7 bonds, 1 residue, 1 model selected > select /A:302-303 20 atoms, 21 bonds, 2 residues, 1 model selected > select /A:302-303 20 atoms, 21 bonds, 2 residues, 1 model selected > select /A:313-314 16 atoms, 15 bonds, 2 residues, 1 model selected > select /A:313-314 16 atoms, 15 bonds, 2 residues, 1 model selected > select /A:311 12 atoms, 12 bonds, 1 residue, 1 model selected > select /A:311 12 atoms, 12 bonds, 1 residue, 1 model selected > select /A:311-366 453 atoms, 458 bonds, 56 residues, 1 model selected > select /A:311-605 2429 atoms, 2478 bonds, 295 residues, 1 model selected > color sel medium blue > color sel red > select clear > save ""/Users/carinachen/Desktop/rothman/genes to focus on/cdk-12 B0285.1a > /cdk-12 B0285.1a colored domain.cxs"" > close > open ""/Users/carinachen/Desktop/rothman/genes to focus on/elt-7 > C18G1.2a.1/elt-7 C18G1.2a.1 wildtype RAW.pdb"" Chain information for elt-7 C18G1.2a.1 wildtype RAW.pdb #1 --- Chain | Description A | No description available > ui tool show ""Show Sequence Viewer"" > sequence chain /A Alignment identifier is 1/A > select /A:141-142 21 atoms, 20 bonds, 2 residues, 1 model selected > select /A:141-143 32 atoms, 31 bonds, 3 residues, 1 model selected > select /A:138 19 atoms, 18 bonds, 1 residue, 1 model selected > select /A:138-139 43 atoms, 42 bonds, 2 residues, 1 model selected > select /A:137 16 atoms, 15 bonds, 1 residue, 1 model selected > select /A:137-186 803 atoms, 809 bonds, 50 residues, 1 model selected > select /A:77-131 838 atoms, 844 bonds, 55 residues, 1 model selected > select /A:77-187 1750 atoms, 1764 bonds, 111 residues, 1 model selected > select /A:137 16 atoms, 15 bonds, 1 residue, 1 model selected > select /A:137-187 817 atoms, 824 bonds, 51 residues, 1 model selected > color sel red > select clear > save ""/Users/carinachen/Desktop/rothman/genes to focus on/elt-7 > C18G1.2a.1/elt-7 C18G1.2a.1 zinc finger.cxs"" > save ""/Users/carinachen/Desktop/rothman/genes to focus on/elt-7 > C18G1.2a.1/elt-7 C18G1.2a.1 colored domain.cxs"" > close > open ""/Users/carinachen/Desktop/rothman/genes to focus on/ebp-2 > VW02B12L.3.1/ebp-2 RAW wildtype.pdb"" Chain information for ebp-2 RAW wildtype.pdb #1 --- Chain | Description A | No description available > ui tool show ""Show Sequence Viewer"" > sequence chain /A Alignment identifier is 1/A > select /A:203-204 11 atoms, 10 bonds, 2 residues, 1 model selected > select /A:203-213 89 atoms, 88 bonds, 11 residues, 1 model selected > select /A:203-204 11 atoms, 10 bonds, 2 residues, 1 model selected > select /A:203-234 263 atoms, 265 bonds, 32 residues, 1 model selected > color sel red > select clear AlphaFold prediction finished Results in /Users/carinachen/Downloads/ChimeraX/AlphaFold/prediction_25 > open > /Users/carinachen/Downloads/ChimeraX/AlphaFold/prediction_25/best_model.pdb Chain information for best_model.pdb #2 --- Chain | Description A | No description available > save ""/Users/carinachen/Desktop/rothman/genes to focus on/ebp-2 > VW02B12L.3.1/ebp-2 VW02B12L.3.1 colored domain.cxs"" ——— End of log from Tue Nov 21 11:02:44 2023 ——— opened ChimeraX session OpenGL version: 4.1 Metal - 71.6.4 OpenGL renderer: Apple M1 OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro17,1 Processor Name: Unknown Processor Speed: 2.4 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 4 MB Memory: 8 GB Software: System Software Overview: System Version: macOS 11.4 (20F71) Kernel Version: Darwin 20.5.0 Time since boot: 13 days 12:24 Graphics/Displays: Apple M1: Chipset Model: Apple M1 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Family: Supported, Metal GPUFamily Apple 7 Displays: Color LCD: Resolution: 2880 x 1800 UI Looks like: 1440 x 900 @ 60.00Hz Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.1 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.9.26 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect feedback normal Core Tom Goddard all ChimeraX