Deleting a pseudobond group crashes

[Tom Goddard]

Appears that PBGroup.clear() and Group.dtor_code() both delete the pseudobonds and the double deletion causes a crash.

Open pdb 3lu0 and the attached pseudobond file then delete the pseudobonds (delete #2) to test.

Crash dump follows:

Process: Chimera2 [80163]
Path: /Users/USER/*/Chimera2.app/Contents/MacOS/Chimera2
Identifier: edu.ucsf.cgl.Chimera2
Version: 2.0.0 (2.0.0.0)
Code Type: X86-64 (Native)
Parent Process: bash [48982]
Responsible: Emacs-10.7 [48972]
User ID: 501

Date/Time: 2015-06-08 15:01:42.970 -0700
OS Version: Mac OS X 10.10.3 (14D136)
Report Version: 11
Anonymous UUID: ADCA02F2-9A59-6574-CF8F-380125498A20

Time Awake Since Boot: 3600000 seconds

Crashed Thread: 0 Dispatch queue: com.apple.main-thread

Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000

Application Specific Information:
abort() called
* error for object 0x7f8e3e739600: pointer being freed was not allocated

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff87db3286 pthread_kill + 10
1 libsystem_c.dylib 0x00007fff8a658b53 abort + 129
2 libsystem_malloc.dylib 0x00007fff8dbab937 free + 428
3 libatomstruct.dylib 0x000000010711b40f atomstruct::PBGroup::clear() + 47
4 libatomstruct.dylib 0x000000010711cabd pseudobond::Group<atomstruct::Atom, atomstruct::PBond>::dtor_code() + 157
5 libatomstruct.dylib 0x000000010711b399 atomstruct::PBGroup::~PBGroup() + 25
6 libmolc.dylib 0x00000001070c32f6 pseudobond_group_delete + 54 (molc.cpp:400)
7 _ctypes.so 0x0000000106928697 ffi_call_unix64 + 79 (darwin64.S:79)
8 _ctypes.so 0x0000000106928ef8 ffi_call + 872 (x86-ffi64.c:581)
9 _ctypes.so 0x000000010692405b _ctypes_callproc + 891 (callproc.c:811)
10 _ctypes.so 0x000000010691e2f1 PyCFuncPtr_call + 1057 (_ctypes.c:3848)
11 org.python.python 0x0000000105438bc7 PyObject_Call + 103 (abstract.c:2040)
12 org.python.python 0x00000001054ee5ae PyEval_EvalFrameEx + 20958 (ceval.c:4466)
13 org.python.python 0x00000001054f1fc2 fast_function + 210 (ceval.c:4334)
14 org.python.python 0x00000001054ee314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
15 org.python.python 0x00000001054f1fc2 fast_function + 210 (ceval.c:4334)
16 org.python.python 0x00000001054ee314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
17 org.python.python 0x00000001054f1fc2 fast_function + 210 (ceval.c:4334)
18 org.python.python 0x00000001054ee314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
19 org.python.python 0x00000001054e9267 PyEval_EvalCodeEx + 2567 (ceval.c:3588)
20 org.python.python 0x000000010545e13d function_call + 381 (funcobject.c:632)
21 org.python.python 0x0000000105438bc7 PyObject_Call + 103 (abstract.c:2040)
22 org.python.python 0x00000001054ef01f PyEval_EvalFrameEx + 23631 (ceval.c:4561)
23 org.python.python 0x00000001054e9267 PyEval_EvalCodeEx + 2567 (ceval.c:3588)
24 org.python.python 0x00000001054f202c fast_function + 316 (ceval.c:4348)
25 org.python.python 0x00000001054ee314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
26 org.python.python 0x00000001054f1fc2 fast_function + 210 (ceval.c:4334)
27 org.python.python 0x00000001054ee314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
28 org.python.python 0x00000001054f1fc2 fast_function + 210 (ceval.c:4334)
29 org.python.python 0x00000001054ee314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
30 org.python.python 0x00000001054e9267 PyEval_EvalCodeEx + 2567 (ceval.c:3588)
31 org.python.python 0x000000010545e13d function_call + 381 (funcobject.c:632)
32 org.python.python 0x0000000105438bc7 PyObject_Call + 103 (abstract.c:2040)
33 org.python.python 0x000000010544c1bd method_call + 141 (classobject.c:347)
34 org.python.python 0x0000000105438bc7 PyObject_Call + 103 (abstract.c:2040)
35 org.python.python 0x00000001054f165d PyEval_CallObjectWithKeywords + 93 (ceval.c:4114)
36 _core.so 0x00000001075611fc wxPyCallback::EventThunker(wxEvent&) + 284 (sip_corewxEvtHandler.cpp:70)
37 libwx_osx_cocoau-3.0.0.3.0.dylib 0x00000001085a0dba wxEvtHandler::SearchDynamicEventTable(wxEvent&) + 186
38 libwx_osx_cocoau-3.0.0.3.0.dylib 0x00000001085a0b2b wxEvtHandler::ProcessEventLocally(wxEvent&) + 59
39 libwx_osx_cocoau-3.0.0.3.0.dylib 0x00000001085a0a3e wxEvtHandler::ProcessEvent(wxEvent&) + 190
40 _glcanvas.so 0x0000000110a12fba sipwxGLCanvas::ProcessEvent(wxEvent&) + 154 (sip_glcanvaswxGLCanvas.cpp:420)
41 libwx_osx_cocoau-3.0.0.3.0.dylib 0x00000001085a0e5f wxEvtHandler::SafelyProcessEvent(wxEvent&) + 15
42 libwx_osx_cocoau-3.0.0.3.0.dylib 0x00000001085df57d wxWindow::OSXHandleKeyEvent(wxKeyEvent&) + 285
43 libwx_osx_cocoau-3.0.0.3.0.dylib 0x00000001086ac2e4 wxWidgetCocoaImpl::doCommandBySelector(void*, NSView*, void*) + 260
44 com.apple.AppKit 0x00007fff8f65cf11 -[NSTextInputContext(NSInputContext_WithCompletion) doCommandBySelector:completionHandler:] + 118
45 com.apple.AppKit 0x00007fff8f642d33 -[NSKeyBindingManager(NSKeyBindingManager_MultiClients) interpretEventAsCommand:forClient:] + 1899
46 com.apple.AppKit 0x00007fff8fc09292 61-[NSTextInputContext _handleEvent:options:completionHandler:]_block_invoke972 + 335
47 com.apple.AppKit 0x00007fff8f644d0f -[NSTextInputContext(NSInputContext_WithCompletion) hasMarkedTextWithCompletionHandler:] + 76
48 com.apple.AppKit 0x00007fff8f65ce13 61-[NSTextInputContext _handleEvent:options:completionHandler:]_block_invoke_3 + 95
49 com.apple.AppKit 0x00007fff8f655fe8 -[NSTextInputContext tryHandleEvent_HasMarkedText_withDispatchCondition:dispatchWork:continuation:] + 101
50 com.apple.AppKit 0x00007fff8fc09094 61-[NSTextInputContext _handleEvent:options:completionHandler:]_block_invoke960 + 321
51 com.apple.HIToolbox 0x00007fff8dc33d4f TSMProcessRawKeyEventWithOptionsAndCompletionHandler_block_invoke_5 + 70
52 com.apple.HIToolbox 0x00007fff8dc32c45 _ZL23DispatchEventToHandlersP14EventTargetRecP14OpaqueEventRefP14HandlerCallRec_block_invoke + 108
53 com.apple.AppKit 0x00007fff8f645716 55-[NSTextInputContext handleTSMEvent:completionHandler:]_block_invoke174 + 2387
54 com.apple.AppKit 0x00007fff8f644d0f -[NSTextInputContext(NSInputContext_WithCompletion) hasMarkedTextWithCompletionHandler:] + 76
55 com.apple.AppKit 0x00007fff8f644cb0 55-[NSTextInputContext handleTSMEvent:completionHandler:]_block_invoke_2 + 95
56 com.apple.AppKit 0x00007fff8f644c28 -[NSTextInputContext tryHandleTSMEvent_HasMarkedText_withDispatchCondition:dispatchWork:continuation:] + 101
57 com.apple.AppKit 0x00007fff8f6448e5 -[NSTextInputContext handleTSMEvent:completionHandler:] + 3122
58 com.apple.AppKit 0x00007fff8f643c3e _NSTSMEventHandler + 324
59 com.apple.HIToolbox 0x00007fff8dbccb6c DispatchEventToHandlers(EventTargetRec*, OpaqueEventRef*, HandlerCallRec*) + 1260
60 com.apple.HIToolbox 0x00007fff8dbcbfae SendEventToEventTargetInternal(OpaqueEventRef*, OpaqueEventTargetRef*, HandlerCallRec*) + 386
61 com.apple.HIToolbox 0x00007fff8dbcbe22 SendEventToEventTargetWithOptions + 43
62 com.apple.HIToolbox 0x00007fff8dc3026c SendTSMEvent_WithCompletionHandler + 417
63 com.apple.HIToolbox 0x00007fff8dc3076c SendUnicodeTextAEToUnicodeDoc_WithCompletionHandler_block_invoke + 400
64 com.apple.HIToolbox 0x00007fff8dc305a6 SendFilterTextEvent_WithCompletionHandler_block_invoke + 189
65 com.apple.HIToolbox 0x00007fff8dc302c0 SendTSMEvent_WithCompletionHandler + 501
66 com.apple.HIToolbox 0x00007fff8dc3008f SendFilterTextEvent_WithCompletionHandler + 236
67 com.apple.HIToolbox 0x00007fff8dc2fd51 SendUnicodeTextAEToUnicodeDoc_WithCompletionHandler + 295
68 com.apple.HIToolbox 0x00007fff8dc2fae9 utDeliverTSMEvent_WithCompletionHandler_block_invoke_2 + 296
69 com.apple.HIToolbox 0x00007fff8dc2f988 utDeliverTSMEvent_WithCompletionHandler_block_invoke + 437
70 com.apple.HIToolbox 0x00007fff8dc2f7cd TSMKeyEvent_WithCompletionHandler + 701
71 com.apple.HIToolbox 0x00007fff8dc2f4d0 TSMProcessRawKeyEventWithOptionsAndCompletionHandler_block_invoke_4 + 251
72 com.apple.HIToolbox 0x00007fff8dc2f386 TSMProcessRawKeyEventWithOptionsAndCompletionHandler_block_invoke_3 + 330
73 com.apple.HIToolbox 0x00007fff8dc2f112 TSMProcessRawKeyEventWithOptionsAndCompletionHandler_block_invoke_2 + 259
74 com.apple.HIToolbox 0x00007fff8dc2ef25 TSMProcessRawKeyEventWithOptionsAndCompletionHandler_block_invoke + 251
75 com.apple.HIToolbox 0x00007fff8dc1376f TSMProcessRawKeyEventWithOptionsAndCompletionHandler + 3068
76 com.apple.AppKit 0x00007fff8fc08ea6 61-[NSTextInputContext _handleEvent:options:completionHandler:]_block_invoke949 + 131
77 com.apple.AppKit 0x00007fff8f642462 -[NSTextInputContext tryTSMProcessRawKeyEvent:dispatchCondition:setupForDispatch:furtherCondition:dispatchWork:continuation:] + 127
78 com.apple.AppKit 0x00007fff8f642195 -[NSTextInputContext _handleEvent:options:completionHandler:] + 1266
79 com.apple.AppKit 0x00007fff8f641c5e -[NSTextInputContext handleEvent:] + 109
80 com.apple.AppKit 0x00007fff8f641b64 -[NSView interpretKeyEvents:] + 207
81 libwx_osx_cocoau-3.0.0.3.0.dylib 0x00000001086afb29 wxWidgetCocoaImpl::DoHandleKeyEvent(NSEvent*) + 537
82 libwx_osx_cocoau-3.0.0.3.0.dylib 0x00000001086abe6f wxWidgetCocoaImpl::keyEvent(NSEvent*, NSView*, void*) + 159
83 com.apple.AppKit 0x00007fff8fb3111b -[NSWindow _reallySendEvent:isDelayedEvent:] + 5452
84 com.apple.AppKit 0x00007fff8f4c2d76 -[NSWindow sendEvent:] + 470
85 libwx_osx_cocoau-3.0.0.3.0.dylib 0x00000001086997c6 -[wxNSWindow sendEvent:] + 118
86 com.apple.AppKit 0x00007fff8f4bf9b1 -[NSApplication sendEvent:] + 4199
87 libwx_osx_cocoau-3.0.0.3.0.dylib 0x00000001085aef36 -[wxNSApplication sendEvent:] + 134
88 com.apple.AppKit 0x00007fff8f3e8c68 -[NSApplication run] + 711
89 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010868dec3 wxGUIEventLoop::OSXDoRun() + 115
90 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010856bc14 wxCFEventLoop::DoRun() + 52
91 libwx_osx_cocoau-3.0.0.3.0.dylib 0x0000000108496b45 wxEventLoopBase::Run() + 165
92 libwx_osx_cocoau-3.0.0.3.0.dylib 0x000000010845aee1 wxAppConsoleBase::MainLoop() + 209
93 _core.so 0x00000001077ddee5 wxPyApp::MainLoop() + 181 (sip_corewxPyApp.cpp:316)
94 _core.so 0x00000001077e165d meth_wxPyApp_MainLoop(_object*, _object*) + 205 (sip_corewxPyApp.cpp:1794)
95 org.python.python 0x00000001054ee913 PyEval_EvalFrameEx + 21827 (ceval.c:4237)
96 org.python.python 0x00000001054f1fc2 fast_function + 210 (ceval.c:4334)
97 org.python.python 0x00000001054ee314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
98 org.python.python 0x00000001054f1fc2 fast_function + 210 (ceval.c:4334)
99 org.python.python 0x00000001054ee314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
100 org.python.python 0x00000001054e9267 PyEval_EvalCodeEx + 2567 (ceval.c:3588)
101 org.python.python 0x00000001054f202c fast_function + 316 (ceval.c:4348)
102 org.python.python 0x00000001054ee314 PyEval_EvalFrameEx + 20292 (ceval.c:4262)
103 org.python.python 0x00000001054e9267 PyEval_EvalCodeEx + 2567 (ceval.c:3588)
104 org.python.python 0x00000001054e884f PyEval_EvalCode + 63 (ceval.c:775)
105 org.python.python 0x0000000105508ab5 PyImport_ImportFrozenModuleObject + 469 (import.c:869)
106 org.python.python 0x0000000105508ba2 PyImport_ImportFrozenModule + 34 (import.c:1291)
107 org.python.python 0x000000010550245e Py_FrozenMain + 430 (frozenmain.c:84)
108 libdyld.dylib 0x00007fff8c2f45c9 start + 1

Thread 1:: Dispatch queue: com.apple.libdispatch-manager
0 libsystem_kernel.dylib 0x00007fff87db4232 kevent64 + 10
1 libdispatch.dylib 0x00007fff8750ca6a _dispatch_mgr_thread + 52

Thread 2:
0 libsystem_kernel.dylib 0x00007fff87dae4de mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff87dad64f mach_msg + 55
2 com.apple.CoreFoundation 0x00007fff81b75eb4 CFRunLoopServiceMachPort + 212
3 com.apple.CoreFoundation 0x00007fff81b7537b CFRunLoopRun + 1371
4 com.apple.CoreFoundation 0x00007fff81b74bd8 CFRunLoopRunSpecific + 296
5 com.apple.AppKit 0x00007fff8f4bb66b _NSEventThread + 137
6 libsystem_pthread.dylib 0x00007fff8cda6268 _pthread_body + 131
7 libsystem_pthread.dylib 0x00007fff8cda61e5 _pthread_start + 176
8 libsystem_pthread.dylib 0x00007fff8cda441d thread_start + 13

Thread 3:: OGL Profiler
0 libsystem_kernel.dylib 0x00007fff87dae4de mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff87dad64f mach_msg + 55
2 com.apple.opengl 0x00007fff8decba79 glcDebugListener + 336
3 libsystem_pthread.dylib 0x00007fff8cda6268 _pthread_body + 131
4 libsystem_pthread.dylib 0x00007fff8cda61e5 _pthread_start + 176
5 libsystem_pthread.dylib 0x00007fff8cda441d thread_start + 13

Thread 4:
0 libsystem_kernel.dylib 0x00007fff87db394a workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff8cda440d start_wqthread + 13

Thread 0 crashed with X86 Thread State (64-bit):

rax: 0x0000000000000000 rbx: 0x0000000000000006 rcx: 0x00007fff5a7d80d8 rdx: 0x0000000000000000
rdi: 0x0000000000000513 rsi: 0x0000000000000006 rbp: 0x00007fff5a7d8100 rsp: 0x00007fff5a7d80d8

r8: 0x0000000000000001 r9: 0x0000000000000000 r10: 0x0000000008000000 r11: 0x0000000000000206

r12: 0x0000000105429000 r13: 0x0000000000000005 r14: 0x00007fff731db300 r15: 0x0000000000000000
rip: 0x00007fff87db3286 rfl: 0x0000000000000206 cr2: 0x00007fff72b69fd8

Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133

Binary Images:

0x105423000 - 0x105423fff +edu.ucsf.cgl.Chimera2 (2.0.0 - 2.0.0.0) <E3F7E2DF-42E7-3DC9-BE43-60FFF29D28D1> /Users/USER/*/Chimera2.app/Contents/MacOS/Chimera2
0x10542c000 - 0x1055bbff7 +org.python.python (3.4.3, [c] 2001-2015 Python Software Foundation. - 3.4.3) <B05216B6-F925-3443-8EDD-E303D42E94A4> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/Python
0x1059aa000 - 0x1059abfff +_heapq.so (0) <C9A206E4-A401-3B7E-8740-A5BAE8839184> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_heapq.so
0x1059ef000 - 0x1059f3ff7 +_struct.so (0) <3D108042-4157-3FBA-B318-08C56E80698D> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_struct.so
0x105a5c000 - 0x105a5efff +time.so (0) <307B7F4F-645D-3C3D-BFEF-0A5C4F6D390A> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/time.so
0x105a65000 - 0x105a66fff +_posixsubprocess.so (0) <EEFDE49E-4BFF-3D97-8F06-8946F073B3C5> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_posixsubprocess.so
0x105a6a000 - 0x105a6cff7 +select.so (0) <A4E82A09-6F63-3DA7-A7EB-30597FC4AD82> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/select.so
0x105ab2000 - 0x105ab6ff7 +math.so (0) <C7AC55D2-554C-352B-A739-ABAA213F73A7> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/math.so
0x105afd000 - 0x105b00ff7 +binascii.so (0) <F71A29DE-1EBF-3BD4-B753-8BF4C0D4CA31> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/binascii.so
0x105b04000 - 0x105b16fff +libz.1.dylib (0) <36544000-4EE5-3392-957E-4D2B77C70B5B> /Users/USER/*/libz.1.dylib
0x105b1a000 - 0x105b25ff7 +_datetime.so (0) <9AE5EAA1-6686-32CE-B810-0D97535BD444> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_datetime.so
0x105b70000 - 0x105b99fff +pyexpat.so (0) <32E313AD-F9E6-3744-BE64-6687CE52F33A> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/pyexpat.so
0x105c2b000 - 0x105c2bff7 +_opcode.so (0) <7BA2D27A-F922-37C5-A54B-3EAAA737E552> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_opcode.so
0x105c6e000 - 0x105c7fff7 +_pickle.so (0) <BDBBFEF4-FC06-34C6-9F1B-A1ED83285598> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_pickle.so
0x105c8b000 - 0x105c91fff +_geometry.so (0) <ED57222B-4D45-36D9-8BAB-754E7332B31E> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/chimera/core/geometry/_geometry.so
0x105c97000 - 0x105cfcff7 +libarrays.dylib (0) <2FA87925-A92A-3B87-BC09-E6720E1F0C1F> /Users/USER/*/libarrays.dylib
0x105d4a000 - 0x105d4dfff +zlib.so (0) <3BCE3DFF-1B10-3484-A468-1117E5D76A7E> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/zlib.so
0x105d52000 - 0x105d53ff7 +_bz2.so (0) <BDA4B442-81D6-3254-A1B1-E9A5C1E53E8D> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_bz2.so
0x105e17000 - 0x105e17fff +grp.so (0) <F6F2336F-6A42-319F-93D3-08C0AA807410> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/grp.so
0x105e5a000 - 0x105e5aff7 +_bisect.so (0) <B8DDB08B-CC89-3354-B123-15061E0E63C6> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_bisect.so
0x105e5d000 - 0x105e5fff7 +_hashlib.so (0) <50041DC6-EDEE-3D6A-BD44-CA0B8D97139C> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_hashlib.so
0x105e64000 - 0x105ea7ff7 +libssl.1.0.0.dylib (0) <BEEF5C79-D723-36A2-857E-F3F5BA24BB0C> /Users/USER/*/libssl.1.0.0.dylib
0x105ec2000 - 0x105fdcfff +libcrypto.1.0.0.dylib (0) <9AE8F2A4-4DDF-3849-9E20-60FA36C90BBA> /Users/USER/*/libcrypto.1.0.0.dylib
0x10608d000 - 0x10608eff7 +_random.so (0) <45DDB9C2-D4E4-39D8-854E-6D4EE918B5FF> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_random.so
0x106091000 - 0x10609aff7 +_socket.so (0) <437D1CFF-F01B-3891-B560-654C2AC6E618> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_socket.so
0x1061e7000 - 0x1061f1fff +_ssl.so (0) <8D817729-A148-3986-ADCA-3B76D684050D> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_ssl.so
0x1061fd000 - 0x1061fdff7 +_scproxy.so (0) <846D5C3E-AA53-3386-B8D6-98EF6D24B82D> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/lib-dynload/_scproxy.so
0x1062c0000 - 0x1062c0fff +_appdirs.so (0) <B6AE3F82-204F-38EE-96F3-B51F21B414C4> /Users/USER/*/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/chimera/core/_appdirs.so
0x1062c3000 - 0x1062c4ff7 +libappdirs.dylib (0) <D24C2B68-8B30-3976-A866-E7200AA2D807> /Users/USER/*/libappdirs.dylib
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0x7fff8ce50000 - 0x7fff8cfdefff libBLAS.dylib (1128) <497912C1-A98E-3281-BED7-E9C751552F61> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
0x7fff8cfdf000 - 0x7fff8d030fff com.apple.audio.CoreAudio (4.3.0 - 4.3.0) <450293F7-DAE7-3DD0-8F7C-71FC2FD72627> /System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio
0x7fff8d12b000 - 0x7fff8d15bfff libsystem_m.dylib (3086.1) <1E12AB45-6D96-36D0-A226-F24D9FB0D9D6> /usr/lib/system/libsystem_m.dylib
0x7fff8d15c000 - 0x7fff8d17cfff com.apple.IconServices (47.1 - 47.1) <E83DFE3B-6541-3736-96BB-26DC5D0100F1> /System/Library/PrivateFrameworks/IconServices.framework/Versions/A/IconServices
0x7fff8d1d6000 - 0x7fff8d4d8ffb com.apple.GeoServices (1.0 - 1077.0.18) <2BBF8B44-DD46-3432-8C84-6D6AA004C233> /System/Library/PrivateFrameworks/GeoServices.framework/Versions/A/GeoServices
0x7fff8d4d9000 - 0x7fff8d4d9fff com.apple.ApplicationServices (48 - 48) <5BF7910B-C328-3BF8-BA4F-CE52B574CE01> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices
0x7fff8d4da000 - 0x7fff8d505fff libc++abi.dylib (125) <88A22A0F-87C6-3002-BFBA-AC0F2808B8B9> /usr/lib/libc++abi.dylib
0x7fff8d536000 - 0x7fff8d552ff7 com.apple.pluginkit.framework (1.0 - 1) <D1A7F6E5-091B-30E7-852B-E866BF38A5AB> /System/Library/PrivateFrameworks/PlugInKit.framework/Versions/A/PlugInKit
0x7fff8d654000 - 0x7fff8d654fff com.apple.Accelerate (1.10 - Accelerate 1.10) <F1B96A61-7E4B-31BD-A35B-BA7EF1F16EF4> /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate
0x7fff8d655000 - 0x7fff8d658fff com.apple.help (1.3.3 - 46) <CA4541F4-CEF5-355C-8F1F-EA65DC1B400F> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Help.framework/Versions/A/Help
0x7fff8d6e9000 - 0x7fff8d6f6ff7 libbz2.1.0.dylib (36) <2DF83FBC-5C08-39E1-94F5-C28653791B5F> /usr/lib/libbz2.1.0.dylib
0x7fff8d702000 - 0x7fff8d74dfff com.apple.CloudDocs (1.0 - 321.6) <4C54EDB7-4377-3722-8C47-F3C3D260FCBA> /System/Library/PrivateFrameworks/CloudDocs.framework/Versions/A/CloudDocs
0x7fff8d750000 - 0x7fff8db80fff com.apple.vision.FaceCore (3.1.6 - 3.1.6) <C3B823AA-C261-37D3-B4AC-C59CE91C8241> /System/Library/PrivateFrameworks/FaceCore.framework/Versions/A/FaceCore
0x7fff8db81000 - 0x7fff8db89fff libsystem_dnssd.dylib (561.1.1) <62B70ECA-E40D-3C63-896E-7F00EC386DDB> /usr/lib/system/libsystem_dnssd.dylib
0x7fff8dba7000 - 0x7fff8dbc3ff7 libsystem_malloc.dylib (53.1.1) <19BCC257-5717-3502-A71F-95D65AFA861B> /usr/lib/system/libsystem_malloc.dylib
0x7fff8dbc4000 - 0x7fff8dec9ff3 com.apple.HIToolbox (2.1.1 - 758.7) <6711FAA9-904A-3B49-9665-FC8D13B93C42> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox
0x7fff8deca000 - 0x7fff8ded8ff7 com.apple.opengl (11.1.2 - 11.1.2) <864B35BF-1E76-382B-8D5F-38C7282621E6> /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff8defc000 - 0x7fff8df13ff7 libLinearAlgebra.dylib (1128) <E78CCBAA-A999-3B65-8EC9-06DB15E67C37> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLinearAlgebra.dylib
0x7fff8df14000 - 0x7fff8df82ffb com.apple.Heimdal (4.0 - 2.0) <7697A837-98B8-3BDB-A7D2-8ED4C9ABC510> /System/Library/PrivateFrameworks/Heimdal.framework/Versions/A/Heimdal
0x7fff8df83000 - 0x7fff8dfaafff com.apple.shortcut (2.14 - 2.14) <0E9228EC-E688-3E83-9516-5211FFEA923E> /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff8dfbe000 - 0x7fff8e004ff7 libauto.dylib (186) <A260789B-D4D8-316A-9490-254767B8A5F1> /usr/lib/libauto.dylib
0x7fff8e028000 - 0x7fff8e050fff libsystem_info.dylib (459.20.1) <AEB3FE62-4763-3050-8352-D6F9AF961AE6> /usr/lib/system/libsystem_info.dylib
0x7fff8e051000 - 0x7fff8e05cff7 com.apple.CrashReporterSupport (10.10 - 631) <D87A64FA-64B1-3B23-BB43-ADE173C108C6> /System/Library/PrivateFrameworks/CrashReporterSupport.framework/Versions/A/CrashReporterSupport
0x7fff8e05d000 - 0x7fff8e05ffff com.apple.loginsupport (1.0 - 1) <DAAD7013-A19D-3858-BFF7-DE1DAF664401> /System/Library/PrivateFrameworks/login.framework/Versions/A/Frameworks/loginsupport.framework/Versions/A/loginsupport
0x7fff8e060000 - 0x7fff8e393ff7 libmecabra.dylib (666.7) <0ED8AE5E-7A5B-34A6-A2EE-2B852E60E1E2> /usr/lib/libmecabra.dylib
0x7fff8e39f000 - 0x7fff8f361ffb com.apple.WebCore (10600 - 10600.5.17) <587F71B3-28E7-3EBC-87B3-1F5E1D8C1349> /System/Library/Frameworks/WebKit.framework/Versions/A/Frameworks/WebCore.framework/Versions/A/WebCore
0x7fff8f362000 - 0x7fff8fee3ff7 com.apple.AppKit (6.9 - 1347.57) <B214D528-7D1C-39B2-BE36-821D417A0297> /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
0x7fff9054e000 - 0x7fff9060eff7 com.apple.backup.framework (1.6.4 - 1.6.4) <A67CE7D7-AAE4-3AC0-86B7-EAF403853D09> /System/Library/PrivateFrameworks/Backup.framework/Versions/A/Backup
0x7fff9060f000 - 0x7fff9061cfff libxar.1.dylib (255) <7CD69BB5-97BA-3858-8A8B-2F33F129E6E7> /usr/lib/libxar.1.dylib
0x7fff90690000 - 0x7fff90698ff7 com.apple.icloud.FindMyDevice (1.0 - 1) <9CE67F85-2BA8-3093-97BA-07BF5C04A5D6> /System/Library/PrivateFrameworks/FindMyDevice.framework/Versions/A/FindMyDevice
0x7fff906a2000 - 0x7fff906c1fff com.apple.CoreDuet (1.0 - 1) <36AA9FD5-2685-314D-B364-3FA4688D86BD> /System/Library/PrivateFrameworks/CoreDuet.framework/Versions/A/CoreDuet
0x7fff90718000 - 0x7fff90725ff3 com.apple.ProtocolBuffer (1 - 228.0.1) <3429EB06-9F0E-355F-B9AB-F72879177398> /System/Library/PrivateFrameworks/ProtocolBuffer.framework/Versions/A/ProtocolBuffer
0x7fff90726000 - 0x7fff9072cff7 com.apple.XPCService (2.0 - 1) <AA4A5393-1F5D-3465-A417-0414B95DC052> /System/Library/PrivateFrameworks/XPCService.framework/Versions/A/XPCService
0x7fff90730000 - 0x7fff90734fff libCoreVMClient.dylib (79.1) <201EF6DF-5074-3CB7-A361-398CF957A264> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff907a0000 - 0x7fff907a0fff com.apple.quartzframework (1.5 - 1.5) <26C982A3-2FC3-3F50-B5F4-3C545C3BAC10> /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff907d5000 - 0x7fff907efff7 com.apple.Kerberos (3.0 - 1) <7760E0C2-A222-3709-B2A6-B692D900CEB1> /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos
0x7fff907f0000 - 0x7fff90811fff com.apple.framework.Apple80211 (10.3 - 1030.71.6) <D3862426-2586-3DF7-BA75-9A184FCD74C4> /System/Library/PrivateFrameworks/Apple80211.framework/Versions/A/Apple80211
0x7fff908c0000 - 0x7fff908effff com.apple.securityinterface (10.0 - 55058) <21F38170-2D3D-3FA2-B0EC-379482AFA5E4> /System/Library/Frameworks/SecurityInterface.framework/Versions/A/SecurityInterface
0x7fff908fd000 - 0x7fff90917ff7 libextension.dylib (55.2) <3BB019CA-199A-36AC-AA22-14B562138545> /usr/lib/libextension.dylib
0x7fff9091f000 - 0x7fff9092dfff com.apple.AddressBook.ContactsFoundation (9.0 - 1579) <34ED9046-0157-399F-9742-2FC2D098E368> /System/Library/PrivateFrameworks/ContactsFoundation.framework/Versions/A/ContactsFoundation
0x7fff9092e000 - 0x7fff9097fff7 com.apple.AppleVAFramework (5.0.31 - 5.0.31) <FED294D2-13CB-381D-98D0-BDA909AACA32> /System/Library/PrivateFrameworks/AppleVA.framework/Versions/A/AppleVA
0x7fff90b13000 - 0x7fff90c43fff com.apple.UIFoundation (1.0 - 1) <466BDFA8-0B9F-3AB0-989D-F9779422926A> /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation
0x7fff90c44000 - 0x7fff90c53fff com.apple.LangAnalysis (1.7.0 - 1.7.0) <D1E527E4-C561-352F-9457-E8C50232793C> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis
0x7fff90ede000 - 0x7fff90ef3ffb libCGInterfaces.dylib (294.1) <1A6AADE6-09EC-3054-85F9-E6A3607EBA70> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff90ef4000 - 0x7fff90fd8fff libcrypto.0.9.8.dylib (52.20.2) <977DA067-2588-3BF8-A7B2-F08FC6E9088F> /usr/lib/libcrypto.0.9.8.dylib
0x7fff90fd9000 - 0x7fff90fdbff7 libsystem_coreservices.dylib (9) <41B7C578-5A53-31C8-A96F-C73E030B0938> /usr/lib/system/libsystem_coreservices.dylib
0x7fff90fdc000 - 0x7fff913b3fe7 com.apple.CoreAUC (211.1.0 - 211.1.0) <12645629-E065-388E-A6B5-094A240578CE> /System/Library/PrivateFrameworks/CoreAUC.framework/Versions/A/CoreAUC
0x7fff913b4000 - 0x7fff913cfff7 com.apple.aps.framework (4.0 - 4.0) <5F4CEDD6-C7AD-3026-A5F3-9146F08F23D2> /System/Library/PrivateFrameworks/ApplePushService.framework/Versions/A/ApplePushService
0x7fff913d0000 - 0x7fff9142dfff com.apple.QuickLookFramework (5.0 - 675.42) <A9B7668D-60EF-35B2-9ACB-0E68DE335B15> /System/Library/Frameworks/QuickLook.framework/Versions/A/QuickLook
0x7fff9142e000 - 0x7fff914c2fff com.apple.ink.framework (10.9 - 213) <8E029630-1530-3734-A446-13353F0E7AC5> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
0x7fff914e2000 - 0x7fff9151fff3 com.apple.bom (14.0 - 193.6) <3CE5593D-DB28-3BFD-943E-6261006FA292> /System/Library/PrivateFrameworks/Bom.framework/Versions/A/Bom
0x7fff9153a000 - 0x7fff91542ff3 com.apple.CoreServices.FSEvents (1210.20.1 - 1210.20.1) <84F79D3E-7B5E-3C93-8479-35794A3F125E> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/FSEvents.framework/Versions/A/FSEvents
0x7fff91543000 - 0x7fff91568ff7 libPng.dylib (1237) <CFBF1344-36AB-3AAE-B2EB-9FC1369F967F> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib
0x7fff91569000 - 0x7fff915dbfff com.apple.framework.IOKit (2.0.2 - 1050.20.2) <09C0518C-90DF-3FC3-96D6-34D35F72C8EF> /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
0x7fff915e1000 - 0x7fff915e9ffb libcopyfile.dylib (118.1.2) <0C68D3A6-ACDD-3EF3-991A-CC82C32AB836> /usr/lib/system/libcopyfile.dylib

External Modification Summary:

Calls made by other processes targeting this process:

task_for_pid: 2
thread_create: 0
thread_set_state: 0

Calls made by this process:

task_for_pid: 0
thread_create: 0
thread_set_state: 0

Calls made by all processes on this machine:

task_for_pid: 7028518
thread_create: 0
thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=316.8M resident=181.2M(57%) swapped_out_or_unallocated=135.6M(43%)
Writable regions: Total=337.5M written=105.7M(31%) resident=169.8M(50%) swapped_out=0K(0%) unallocated=167.7M(50%)

REGION TYPE VIRTUAL
=========== =======
Activity Tracing 2048K
CG backing stores 4280K
CG image 296K
CG raster data 1128K
CG shared images 304K
CoreAnimation 24K
CoreGraphics 8K
CoreImage 16K
CoreServices 3668K
CoreUI image data 244K
Dispatch continuations 16.0M
Foundation 4K
IOKit 25.4M
Kernel Alloc Once 8K
MALLOC 205.1M
MALLOC (admin) 32K
MALLOC_LARGE (reserved) 384K reserved VM address space (unallocated)
Memory Tag 242 12K
Memory Tag 251 28K
OpenCL 52K
OpenGL GLSL 256K
STACK GUARD 55.7M
Stack 9.9M
VM_ALLOCATE 71.6M
DATA 39.9M
GLSLBUILTINS 2588K
IMAGE 528K
LINKEDIT 86.8M
TEXT 230.0M
UNICODE 552K
mapped file 126.3M
shared memory 68K
=========== =======
TOTAL 883.0M
TOTAL, minus reserved VM space 882.6M

Model: iMac13,2, BootROM IM131.010A.B05, 4 processors, Intel Core i7, 3.4 GHz, 32 GB, SMC 2.11f16
Graphics: NVIDIA GeForce GTX 680MX, NVIDIA GeForce GTX 680MX, PCIe, 2048 MB
Memory Module: BANK 0/DIMM0, 8 GB, DDR3, 1600 MHz, 0x85F7, 0x483634314755363747313630304700000000
Memory Module: BANK 1/DIMM0, 8 GB, DDR3, 1600 MHz, 0x85F7, 0x483634314755363747313630304700000000
Memory Module: BANK 0/DIMM1, 8 GB, DDR3, 1600 MHz, 0x85F7, 0x483634314755363747313630304700000000
Memory Module: BANK 1/DIMM1, 8 GB, DDR3, 1600 MHz, 0x85F7, 0x483634314755363747313630304700000000
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0xF4), Broadcom BCM43xx 1.0 (7.15.166.24.3)
Bluetooth: Version 4.3.4f4 15601, 3 services, 27 devices, 1 incoming serial ports
Network Service: Ethernet, Ethernet, en0
Network Service: Wi-Fi, AirPort, en1
Serial ATA Device: APPLE HDD ST3000DM001, 3 TB
Serial ATA Device: APPLE SSD SM128E, 121.33 GB
USB Device: Kinesis Keyboard Hub
USB Device: Composite Device
USB Device: Keyboard Hub
USB Device: Composite Device
USB Device: Hub
USB Device: Rift DK2
USB Device: Rift DK2
USB Device: FaceTime HD Camera (Built-in)
USB Device: Hub
USB Device: Camera DK2
USB Device: Hub
USB Device: BRCM20702 Hub
USB Device: Bluetooth USB Host Controller
Thunderbolt Bus: iMac, Apple Inc., 23.4