[Chimera-users] Saving .pdb file in location of .mrc file

[Ryan Harlich]

If you move and save a volume and reopen it, it does not appear in new place but rather original place. If you move and save a .ent/.pdb and reopen it, it appears in new place.



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________________________________
From: Elaine Meng <meng at cgl.ucsf.edu>
Sent: Wednesday, June 26, 2019 9:20:21 AM
To: Ryan Harlich
Cc: chimera-users at cgl.ucsf.edu
Subject: Re: [Chimera-users] Saving .pdb file in location of .mrc file

For the others on the list,
although I’m not sure what solution you hit upon, the issue is discussed here, in “Saving Maps after Fitting” (bottom of page):

<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/savemodel.html#afterfitting>

Elaine
-----
Elaine C. Meng, Ph.D.
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Jun 25, 2019, at 6:49 PM, Ryan Harlich <ryanharlich at hotmail.com> wrote:
>
> Hi Chimera,
>
> I was able to figure this out after several hours. You can disregard the below email.
>
> Best,
> Ryan Harlich
>
> Sent from Mail for Windows 10
>
> From: Ryan Harlich
> Sent: Tuesday, June 25, 2019 4:46:11 PM
> To: chimera-users at cgl.ucsf.edu
> Subject: Saving .pdb file in location of .mrc file
>
> Hi Chimera,
>
> I am having a bit of difficulty figuring out how to move the location of a map and save it in that location. I am able to move it but when I save and reopen it is back to where it is. I see I can use molmap and use onGrid to achieve this but this overwrites gridSpacing 1 which is crucial as I need to set the resolution to 1.
>
> So the problem is when I save a molmap with gridSpacing after performing move cofr and reopen it, it is not in the location of my .mrc. If I use onGrid I cannot achieve gridSpacing 1.
>
> An alternative if possible would be to have the .ent/.pdb saved to the new location where the .mrc density map is and reopened to this same location because then I can do the rest from there.
>
> Best,
> Ryan Harlich
>
> Sent from Mail for Windows 10
>
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