[Chimera-users] Saving .pdb file in location of .mrc file

[Elaine Meng]

Yes, that is explained in the link in my previous message.

Elaine

> On Jun 26, 2019, at 9:23 AM, Ryan Harlich <ryanharlich at hotmail.com> wrote:
> 
> If you move and save a volume and reopen it, it does not appear in new place but rather original place. If you move and save a .ent/.pdb and reopen it, it appears in new place.
>  
> Sent from Mail for Windows 10
>  
> From: Elaine Meng <meng at cgl.ucsf.edu>
> Sent: Wednesday, June 26, 2019 9:20:21 AM
> To: Ryan Harlich
> Cc: chimera-users at cgl.ucsf.edu
> Subject: Re: [Chimera-users] Saving .pdb file in location of .mrc file
>  
> For the others on the list,
> although I’m not sure what solution you hit upon, the issue is discussed here, in “Saving Maps after Fitting” (bottom of page):
> 
> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/savemodel.html#afterfitting>
> 
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> 
> > On Jun 25, 2019, at 6:49 PM, Ryan Harlich <ryanharlich at hotmail.com> wrote:
> > 
> > Hi Chimera,
> >  
> > I was able to figure this out after several hours. You can disregard the below email.
> >  
> > Best,
> > Ryan Harlich
> >  
> > Sent from Mail for Windows 10
> >  
> > From: Ryan Harlich
> > Sent: Tuesday, June 25, 2019 4:46:11 PM
> > To: chimera-users at cgl.ucsf.edu
> > Subject: Saving .pdb file in location of .mrc file
> >  
> > Hi Chimera,
> >  
> > I am having a bit of difficulty figuring out how to move the location of a map and save it in that location. I am able to move it but when I save and reopen it is back to where it is. I see I can use molmap and use onGrid to achieve this but this overwrites gridSpacing 1 which is crucial as I need to set the resolution to 1.
> >  
> > So the problem is when I save a molmap with gridSpacing after performing move cofr and reopen it, it is not in the location of my .mrc. If I use onGrid I cannot achieve gridSpacing 1.
> >  
> > An alternative if possible would be to have the .ent/.pdb saved to the new location where the .mrc density map is and reopened to this same location because then I can do the rest from there.
> >  
> > Best,
> > Ryan Harlich
> >  
> > Sent from Mail for Windows 10
> >  
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> 
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