Development of a prototype system for archiving integrative/hybrid structure models of biological macromolecules. Vallat B, Webb B et al. Structure. 2018 Jun 5;26(6):894-904.e2.
ISOLDE: a physically realistic environment for model building into low-resolution electron-density maps. Croll TI. Acta Crystallogr D Struct Biol. 2018 Jun 1;74(Pt 6).
Structure, mechanism, and regulation of the chloroplast ATP synthase. Hahn A, Vonck J et al. Science. 2018 May 11;360(6389). pii: eaat4318.
Virtual-reality applications give science a new dimension. Matthews D. Nature. 2018 Apr 30; 557:127-128.
Modular assembly of the nucleolar pre-60S ribosomal subunit. Sanghai ZA, Miller L et al. Nature. 2018 Apr 5;556(7699):126-129.See also: RCSB PDB Images
July 13, 2018
New Virtual Reality at UCSF website shares information on VR projects, resources, and related issues.
April 6, 2018
January 1, 2018Previous news...
UCSF ChimeraX (or simply ChimeraX) is the next-generation molecular visualization program from the Resource for Biocomputing, Visualization, and Informatics (RBVI), following UCSF Chimera. ChimeraX can be downloaded free of charge for academic, government, nonprofit, and personal use. Commercial users, please see licensing.
ChimeraX development is supported in part by grants from the National Institutes of Health (currently R01-GM129325, previously P41-GM103311).
Multimeric assemblies defined in a structure's mmCIF file are automatically listed when the file is opened and can be reconstituted with the sym command. The complex of selenocysteine synthase and tRNASec (PDB 3w1k) is shown as molecular surfaces of different colors for different chains. The asymmetric unit is on the left and the assembly specified in the mmCIF file is on the right, with arrow and text annotations from 2dlabels. See the command file sym.cxc.More features...
The outer-membrane protein CymA admits bulky molecules into the periplasmic space of Klebsiella oxytoca. Here, CymA (PDB 4d5d chain A) is depicted in a style reminiscent of a diagnostic X-ray, with transparent molecular surface and β-strand “ribs” in white. The protein has ingested α-cyclodextrin (top) and β-cyclodextrin (bottom), bound at the entry site and near the exit, respectively. Cyclodextrin carbon atoms are shown in blue-gray and oxygen atoms in brick red. For image setup, see the command file xray.cxc.